| 97 |
0.003858 |
0.1541 |
bsu32520 |
pucG |
-15.24 |
0.029596 |
117 -- 232 |
36 -- 162 |
purine catabolism protein PucG |
|
_____________116_____________________________________________________________________________________________________________________________________233\n_____________|_______________________________________________________________________________________________________________________________________|\n5'-UGA...AUAUA_______CA____GC____G__CGGC__________CUGA__GAUUUAUUAUACAA___GG_______GA_____GAG_________GU_________A_______A__GAAU___G__________________AAGAA...CGG-3'\n______________CGUCAGC__GACA__UUGA_AU____GUCCGC_GCA____CU______________ACU__CUUA_CU__UAAAG____GAAUGGCU________GUC__GGCAGA_GA____UAU_CA_________CCCCGUU\n______________|:|||:|__||||__||||_||____||||||_|||____|:______________|||__||:|_||__:||||____||||||||________:||__||||:|_:|____||:_||_________||||:||\n______________GUAGUUG__CUGU__AACU_UA____CAGGCG_CGU____GG______________UGA__GAGU_GA__GUUUC____CUUACCGA________UAG__CCGUUU_UU____AUG_GU_________GGGGUAA\n3'-AUU...GAGAA_______UC__________G__A_________U___UCAA__UAUAUUACAACAG____AA____A__A______AUUA________AGCAACGU___AA______G__AGC____G__AGAGAAUAA_______AGAAA...CAA-5'\n_____________|_______________________________________________________________________________________________________________________________________|\n_____________163_____________________________________________________________________________________________________________________________________35\n |
226 -- 232 |
36 -- 42 |
-68.3253 kcal/mol |
25.8271 kcal/mol |
31.2699 kcal/mol |
116 233@LB@ | |@LB@5'-UGA...AUAUA CA GC G CGGC CUGA GAUUUAUUAUACAA GG GA GAG GU A A GAAU G AAGAA...CGG-3'@LB@ CGUCAGC GACA UUGA AU GUCCGC GCA CU ACU CUUA CU UAAAG GAAUGGCU GUC GGCAGA GA UAU CA CCCCGUU@LB@ |:|||:| |||| |||| || |||||| ||| |: ||| ||:| || :|||| |||||||| :|| ||||:| :| ||: || ||||:||@LB@ GUAGUUG CUGU AACU UA CAGGCG CGU GG UGA GAGU GA GUUUC CUUACCGA UAG CCGUUU UU AUG GU GGGGUAA@LB@3'-AUU...GAGAA UC G A U UCAA UAUAUUACAACAG AA A A AUUA AGCAACGU AA G AGC G AGAGAAUAA AGAAA...CAA-5'@LB@ | |@LB@ 163 35@LB@@LB@@LB@Energy -15.24 kcal/mol@LB@Hybridization Energy -68.3253 kcal/mol@LB@Unfolding Energy - mRNA 25.8271 kcal/mol@LB@Unfolding Energy - sRNA 31.2699 kcal/mol@LB@@LB@Position - mRNA 117 -- 232@LB@Position - sRNA 36 -- 162@LB@Position Seed - mRNA 226 -- 232@LB@Position Seed - sRNA 36 -- 42@LB@ |
| 85 |
0.003124 |
0.1423 |
bsu15550 |
pyrF |
-13.42 |
0.070218 |
194 -- 221 |
50 -- 78 |
orotidine 5'-phosphate decarboxylase |
|
_____________193___________________________222\n_____________|_____________________________|\n5'-CCC...GGAGC__G____A__AA________C________AUCGC...AGG-3'\n______________UG_AAUC_UG__AAACAA_C_UGCCCAUC\n______________||_||||_||__||||||_|_|:||||||\n______________AC_UUAG_AC__UUUGUU_G_AUGGGUAG\n3'-AUU...AAGCA__G____A__CG______A_C________AGAAU...CAA-5'\n_____________|_____________________________|\n_____________79____________________________49\n |
215 -- 221 |
50 -- 56 |
-24.8332 kcal/mol |
3.07511 kcal/mol |
8.45904 kcal/mol |
193 222@LB@ | |@LB@5'-CCC...GGAGC G A AA C AUCGC...AGG-3'@LB@ UG AAUC UG AAACAA C UGCCCAUC@LB@ || |||| || |||||| | |:||||||@LB@ AC UUAG AC UUUGUU G AUGGGUAG@LB@3'-AUU...AAGCA G A CG A C AGAAU...CAA-5'@LB@ | |@LB@ 79 49@LB@@LB@@LB@Energy -13.42 kcal/mol@LB@Hybridization Energy -24.8332 kcal/mol@LB@Unfolding Energy - mRNA 3.07511 kcal/mol@LB@Unfolding Energy - sRNA 8.45904 kcal/mol@LB@@LB@Position - mRNA 194 -- 221@LB@Position - sRNA 50 -- 78@LB@Position Seed - mRNA 215 -- 221@LB@Position Seed - sRNA 50 -- 56@LB@ |
| 173 |
0.008072 |
0.1751 |
bsu38150 |
qoxC |
-9.07 |
0.441891 |
44 -- 68 |
85 -- 107 |
quinol oxidase subunit 3 |
|
_____________43__________________69\n_____________|___________________|\n5'-ACC...AAUAU______GAAACC_______UUAAU...CAG-3'\n______________CAAUCU______GGCAGAC\n______________||||||______||||:||\n______________GUUAGA______CCGUUUG\n3'-AUU...GCAAC______A____________UUAGC...CAA-5'\n_____________|___________________|\n_____________108_________________84\n |
258 -- 264 |
63 -- 69 |
-12.9926 kcal/mol |
3.83118 kcal/mol |
4.58338 kcal/mol |
43 69@LB@ | |@LB@5'-ACC...AAUAU GAAACC UUAAU...CAG-3'@LB@ CAAUCU GGCAGAC@LB@ |||||| ||||:||@LB@ GUUAGA CCGUUUG@LB@3'-AUU...GCAAC A UUAGC...CAA-5'@LB@ | |@LB@ 108 84@LB@@LB@@LB@Energy -9.07 kcal/mol@LB@Hybridization Energy -12.9926 kcal/mol@LB@Unfolding Energy - mRNA 3.83118 kcal/mol@LB@Unfolding Energy - sRNA 4.58338 kcal/mol@LB@@LB@Position - mRNA 44 -- 68@LB@Position - sRNA 85 -- 107@LB@Position Seed - mRNA 258 -- 264@LB@Position Seed - sRNA 63 -- 69@LB@ |
| 35 |
0.001083 |
0.1199 |
bsu38140 |
qoxD |
-14.68 |
0.038800 |
80 -- 211 |
61 -- 193 |
quinol oxidase subunit 4 |
|
_____________79_________________212\n_____________|__________________|\n5'-UUU...GGGUC_____AA___________AUCUG...CAG-3'\n______________UGUAA___UGGCAAACAA\n______________||:||___||||||||||\n______________ACGUU___ACCGUUUGUU\n3'-AUU...AAGCA_____AGA__________AGCAU...CAA-5'\n_____________|__________________|\n_____________194________________60\n |
204 -- 210 |
62 -- 68 |
-16.9019 kcal/mol |
4.29892 kcal/mol |
4.69882 kcal/mol |
79 212@LB@ | |@LB@5'-UUU...GGGUC AA AUCUG...CAG-3'@LB@ UGUAA UGGCAAACAA@LB@ ||:|| ||||||||||@LB@ ACGUU ACCGUUUGUU@LB@3'-AUU...AAGCA AGA AGCAU...CAA-5'@LB@ | |@LB@ 194 60@LB@@LB@@LB@Energy -14.68 kcal/mol@LB@Hybridization Energy -16.9019 kcal/mol@LB@Unfolding Energy - mRNA 4.29892 kcal/mol@LB@Unfolding Energy - sRNA 4.69882 kcal/mol@LB@@LB@Position - mRNA 80 -- 211@LB@Position - sRNA 61 -- 193@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 62 -- 68@LB@ |
| 90 |
0.003471 |
0.1486 |
bsu35950 |
rbsC |
-15.06 |
0.032267 |
242 -- 293 |
40 -- 84 |
ribose transport system permease RbsC |
|
_____________241______________________________________294\n_____________|________________________________________|\n5'-CAA...AUUCA_____AC_G____AU______AAC________________GUUUA...UCA-3'\n______________CUUCG__G_AGUC___GCAAA___UCG_GCCCGUUUCUUG\n______________|||||__|_|:||___|||||___|||_:|||:|:||||:\n______________GAAGC__C_UUAG___CGUUU___AGC_UGGGUAGAGAAU\n3'-AUU...UUACC_____AA_G____AAC_____GUU___A____________AAGGG...CAA-5'\n_____________|________________________________________|\n_____________85_______________________________________39\n |
273 -- 279 |
45 -- 51 |
-33.8346 kcal/mol |
9.61657 kcal/mol |
8.57091 kcal/mol |
241 294@LB@ | |@LB@5'-CAA...AUUCA AC G AU AAC GUUUA...UCA-3'@LB@ CUUCG G AGUC GCAAA UCG GCCCGUUUCUUG@LB@ ||||| | |:|| ||||| ||| :|||:|:||||:@LB@ GAAGC C UUAG CGUUU AGC UGGGUAGAGAAU@LB@3'-AUU...UUACC AA G AAC GUU A AAGGG...CAA-5'@LB@ | |@LB@ 85 39@LB@@LB@@LB@Energy -15.06 kcal/mol@LB@Hybridization Energy -33.8346 kcal/mol@LB@Unfolding Energy - mRNA 9.61657 kcal/mol@LB@Unfolding Energy - sRNA 8.57091 kcal/mol@LB@@LB@Position - mRNA 242 -- 293@LB@Position - sRNA 40 -- 84@LB@Position Seed - mRNA 273 -- 279@LB@Position Seed - sRNA 45 -- 51@LB@ |
| 48 |
0.001494 |
0.1206 |
bsu33660 |
rghRA |
-13.24 |
0.076349 |
28 -- 146 |
39 -- 166 |
HTH-type transcriptional repressor RghR |
bsu33670 |
_____________27_________________________________________________147\n_____________|__________________________________________________|\n5'-UAU...AUUAC_____A____AAC______U___U___U_______A____A_C_______UUUAG...UCU-3'\n______________GGCUU_UGUU____UUUUG_CAA_ACA_UU___CC_GUCU_C_UAUUCCC\n______________|||||_:|||____|:|||_|||_|||_|:___||_:|||_|_|||||||\n______________CCGAA_GCAA____AGAAC_GUU_UGU_AG___GG_UAGA_G_AUAAGGG\n3'-AUU...ACUUA__________CGUU_____C_______U__CAU__G______A_______GUAAA...CAA-5'\n_____________|__________________________________________________|\n_____________167________________________________________________38\n |
139 -- 145 |
40 -- 46 |
-27.8785 kcal/mol |
6.21563 kcal/mol |
10.9223 kcal/mol |
27 147@LB@ | |@LB@5'-UAU...AUUAC A AAC U U U A A C UUUAG...UCU-3'@LB@ GGCUU UGUU UUUUG CAA ACA UU CC GUCU C UAUUCCC@LB@ ||||| :||| |:||| ||| ||| |: || :||| | |||||||@LB@ CCGAA GCAA AGAAC GUU UGU AG GG UAGA G AUAAGGG@LB@3'-AUU...ACUUA CGUU C U CAU G A GUAAA...CAA-5'@LB@ | |@LB@ 167 38@LB@@LB@@LB@Energy -13.24 kcal/mol@LB@Hybridization Energy -27.8785 kcal/mol@LB@Unfolding Energy - mRNA 6.21563 kcal/mol@LB@Unfolding Energy - sRNA 10.9223 kcal/mol@LB@@LB@Position - mRNA 28 -- 146@LB@Position - sRNA 39 -- 166@LB@Position Seed - mRNA 139 -- 145@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 138 |
0.00639 |
0.1741 |
bsu24900 |
rpmG |
-18.16 |
0.007101 |
92 -- 175 |
92 -- 166 |
50S ribosomal protein L33 |
|
_____________91_________________________________________________________176\n_____________|__________________________________________________________|\n5'-CGC...GCGUA______AUAAU______AUU______AAAACAG________UUCCG____U_______GUAUU...AAA-3'\n______________UCUUCA_____UCAGCA___CAUUGA_______CC_UAGCA_____UCCA_UAUAGUG\n______________||||||_____|||:||___||||||_______||_:||||_____||||_||||:||\n______________AGAAGU_____AGUUGU___GUAACU_______GG_GUCGU_____AGGU_AUAUUAC\n3'-AUU...AAAUG_________________CCU______GUAACA___C_____UCA______________AACAG...CAA-5'\n_____________|__________________________________________________________|\n_____________167________________________________________________________91\n |
142 -- 148 |
118 -- 124 |
-35.8515 kcal/mol |
8.17901 kcal/mol |
10.6225 kcal/mol |
91 176@LB@ | |@LB@5'-CGC...GCGUA AUAAU AUU AAAACAG UUCCG U GUAUU...AAA-3'@LB@ UCUUCA UCAGCA CAUUGA CC UAGCA UCCA UAUAGUG@LB@ |||||| |||:|| |||||| || :|||| |||| ||||:||@LB@ AGAAGU AGUUGU GUAACU GG GUCGU AGGU AUAUUAC@LB@3'-AUU...AAAUG CCU GUAACA C UCA AACAG...CAA-5'@LB@ | |@LB@ 167 91@LB@@LB@@LB@Energy -18.16 kcal/mol@LB@Hybridization Energy -35.8515 kcal/mol@LB@Unfolding Energy - mRNA 8.17901 kcal/mol@LB@Unfolding Energy - sRNA 10.6225 kcal/mol@LB@@LB@Position - mRNA 92 -- 175@LB@Position - sRNA 92 -- 166@LB@Position Seed - mRNA 142 -- 148@LB@Position Seed - sRNA 118 -- 124@LB@ |
| 82 |
0.002803 |
0.1325 |
bsu34100 |
rsbQ |
-17.18 |
0.011511 |
5 -- 86 |
34 -- 116 |
sigma factor SigB regulation protein RsbQ |
|
_____________4__________________________________________________________________________________________87\n_____________|__________________________________________________________________________________________|\n_______5'-CAAA____________C__ACCCC_____________G__UAG______CUCCUCCU___UCUUC_____C____________CUA__U_____GUCCU...UGU-3'\n______________UGUCAUUUUUUU_UC_______________GGU_UC___GCAAUC________GCA_____CAAUU__AUCCAUCUUUU___UC_CCCAU\n______________|||||:|||:|:_||_______________||:_||___||||||________|||_____||||:__|:||||||:||___||_|||||\n______________ACAGUGAAAGAG_AG_______________CCG_AG___CGUUAG________CGU_____GUUAG__UGGGUAGAGAA___AG_GGGUA\n3'-AUU...UUACA____________U__AAGUUUCAUUACUUA___A__CAA______AAC________UU________CA___________UA_________AAGAA...CAA-5'\n_____________|__________________________________________________________________________________________|\n_____________117________________________________________________________________________________________33\n |
65 -- 71 |
47 -- 53 |
-43.7075 kcal/mol |
8.64393 kcal/mol |
22.4324 kcal/mol |
4 87@LB@ | |@LB@ 5'-CAAA C ACCCC G UAG CUCCUCCU UCUUC C CUA U GUCCU...UGU-3'@LB@ UGUCAUUUUUUU UC GGU UC GCAAUC GCA CAAUU AUCCAUCUUUU UC CCCAU@LB@ |||||:|||:|: || ||: || |||||| ||| ||||: |:||||||:|| || |||||@LB@ ACAGUGAAAGAG AG CCG AG CGUUAG CGU GUUAG UGGGUAGAGAA AG GGGUA@LB@3'-AUU...UUACA U AAGUUUCAUUACUUA A CAA AAC UU CA UA AAGAA...CAA-5'@LB@ | |@LB@ 117 33@LB@@LB@@LB@Energy -17.18 kcal/mol@LB@Hybridization Energy -43.7075 kcal/mol@LB@Unfolding Energy - mRNA 8.64393 kcal/mol@LB@Unfolding Energy - sRNA 22.4324 kcal/mol@LB@@LB@Position - mRNA 5 -- 86@LB@Position - sRNA 34 -- 116@LB@Position Seed - mRNA 65 -- 71@LB@Position Seed - sRNA 47 -- 53@LB@ |
| 169 |
0.007812 |
0.1751 |
bsu04680 |
rsbS |
-7.92 |
0.633185 |
77 -- 93 |
53 -- 67 |
RsbT antagonist protein RsbS |
|
_____________76___________________94\n_____________|____________________|\n5'-UAU...GGAAA______AAACAA________CUGGG...AAG-3'\n______________UUGCUC______UCGUCAAC\n______________||:|||______||:|||||\n______________AAUGAG______AGUAGUUG\n3'-AUU...AAAAA______A_____________UCCUG...CAA-5'\n_____________|____________________|\n_____________68___________________52\n |
85 -- 91 |
156 -- 162 |
-12.3218 kcal/mol |
3.62054 kcal/mol |
1.40896 kcal/mol |
76 94@LB@ | |@LB@5'-UAU...GGAAA AAACAA CUGGG...AAG-3'@LB@ UUGCUC UCGUCAAC@LB@ ||:||| ||:|||||@LB@ AAUGAG AGUAGUUG@LB@3'-AUU...AAAAA A UCCUG...CAA-5'@LB@ | |@LB@ 68 52@LB@@LB@@LB@Energy -7.92 kcal/mol@LB@Hybridization Energy -12.3218 kcal/mol@LB@Unfolding Energy - mRNA 3.62054 kcal/mol@LB@Unfolding Energy - sRNA 1.40896 kcal/mol@LB@@LB@Position - mRNA 77 -- 93@LB@Position - sRNA 53 -- 67@LB@Position Seed - mRNA 85 -- 91@LB@Position Seed - sRNA 156 -- 162@LB@ |
| 34 |
0.001006 |
0.1147 |
bsu37620 |
rsfA |
-13.01 |
0.085239 |
64 -- 106 |
124 -- 165 |
prespore-specific transcriptional regulator RsfA |
|
_____________63_________________________________________________107\n_____________|__________________________________________________|\n5'-UUC...ACAUC__A_______UU__A_____UC_____________U_____CCGC_____CCUUC...ACG-3'\n______________AC_CUUCAUU__AC_AGGAU___GAC__UGUUC_C_GCAAG____UCCAU\n______________||_||||||:__||_||||:___|||__|||:|_|_|||||____|||||\n______________UG_GAAGUAG__UG_UCCUG___CUG__ACAGG_G_CGUUC____AGGUA\n3'-AUU...AAAAA__A_______U_________UAA___UA_____C_U_____A________UAUUA...CAA-5'\n_____________|__________________________________________________|\n_____________166________________________________________________123\n |
64 -- 70 |
159 -- 165 |
-31.4528 kcal/mol |
7.34844 kcal/mol |
10.3728 kcal/mol |
63 107@LB@ | |@LB@5'-UUC...ACAUC A UU A UC U CCGC CCUUC...ACG-3'@LB@ AC CUUCAUU AC AGGAU GAC UGUUC C GCAAG UCCAU@LB@ || ||||||: || ||||: ||| |||:| | ||||| |||||@LB@ UG GAAGUAG UG UCCUG CUG ACAGG G CGUUC AGGUA@LB@3'-AUU...AAAAA A U UAA UA C U A UAUUA...CAA-5'@LB@ | |@LB@ 166 123@LB@@LB@@LB@Energy -13.01 kcal/mol@LB@Hybridization Energy -31.4528 kcal/mol@LB@Unfolding Energy - mRNA 7.34844 kcal/mol@LB@Unfolding Energy - sRNA 10.3728 kcal/mol@LB@@LB@Position - mRNA 64 -- 106@LB@Position - sRNA 124 -- 165@LB@Position Seed - mRNA 64 -- 70@LB@Position Seed - sRNA 159 -- 165@LB@ |
