| 187 |
0.008608 |
0.1751 |
bsu17960 |
yneK |
-9.96 |
0.317804 |
143 -- 172 |
155 -- 184 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________142___________173\n_____________|_____________|\n5'-AGU...AAUCU________AU___AUAUG...UAA-3'\n______________CUCUUCGU__ACA\n______________||||||:|__|||\n______________GAGAAGUA__UGU\n3'-AUU...AAAAU________GU___CCUGU...CAA-5'\n_____________|_____________|\n_____________185___________154\n |
161 -- 167 |
160 -- 166 |
-12.096 kcal/mol |
1.39305 kcal/mol |
1.41024 kcal/mol |
142 173@LB@ | |@LB@5'-AGU...AAUCU AU AUAUG...UAA-3'@LB@ CUCUUCGU ACA@LB@ ||||||:| |||@LB@ GAGAAGUA UGU@LB@3'-AUU...AAAAU GU CCUGU...CAA-5'@LB@ | |@LB@ 185 154@LB@@LB@@LB@Energy -9.96 kcal/mol@LB@Hybridization Energy -12.096 kcal/mol@LB@Unfolding Energy - mRNA 1.39305 kcal/mol@LB@Unfolding Energy - sRNA 1.41024 kcal/mol@LB@@LB@Position - mRNA 143 -- 172@LB@Position - sRNA 155 -- 184@LB@Position Seed - mRNA 161 -- 167@LB@Position Seed - sRNA 160 -- 166@LB@ |
| 150 |
0.006829 |
0.1741 |
bsu17970 |
cotM |
-16.22 |
0.018442 |
252 -- 285 |
70 -- 101 |
spore coat protein M |
|
_____________251______________________286\n_____________|________________________|\n5'-AUG...GUAUG________________________UUGAA...UCG-3'\n______________GAUGAAUGGCUUCG__GCAAUUUU\n______________:|||||||||||||__|||||:||\n______________UUACUUACCGAAGC__CGUUAGAA\n3'-AUU...UUUCA______________AA________CCGUU...CAA-5'\n_____________|________________________|\n_____________102______________________69\n |
278 -- 284 |
71 -- 77 |
-28.716 kcal/mol |
7.78723 kcal/mol |
6.67697 kcal/mol |
251 286@LB@ | |@LB@5'-AUG...GUAUG UUGAA...UCG-3'@LB@ GAUGAAUGGCUUCG GCAAUUUU@LB@ :||||||||||||| |||||:||@LB@ UUACUUACCGAAGC CGUUAGAA@LB@3'-AUU...UUUCA AA CCGUU...CAA-5'@LB@ | |@LB@ 102 69@LB@@LB@@LB@Energy -16.22 kcal/mol@LB@Hybridization Energy -28.716 kcal/mol@LB@Unfolding Energy - mRNA 7.78723 kcal/mol@LB@Unfolding Energy - sRNA 6.67697 kcal/mol@LB@@LB@Position - mRNA 252 -- 285@LB@Position - sRNA 70 -- 101@LB@Position Seed - mRNA 278 -- 284@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 165 |
0.007704 |
0.1751 |
bsu18170 |
yngA |
-16.77 |
0.014091 |
132 -- 192 |
122 -- 181 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; PubMedId: 15849754 16850406; Product type pm: membrane component' |
|
_____________131_____________________________________________193\n_____________|_______________________________________________|\n5'-ACA...CAUAU_________UGUU____CA___C_______UAU______________CAACA...CGC-3'\n______________UUUAUUAAU____UAUU__ACA_UGUCCGC___AGUAA__UCCAUAU\n______________||:||:||:____:|||__|||_|||||||___||:||__|||||||\n______________AAGUAGUUG____GUAA__UGU_ACAGGCG___UCGUU__AGGUAUA\n3'-AUU...AUGAG_________UCCU____C____A_______________CA_______UUACA...CAA-5'\n_____________|_______________________________________________|\n_____________182_____________________________________________121\n |
186 -- 192 |
122 -- 128 |
-30.4083 kcal/mol |
4.20108 kcal/mol |
10.3807 kcal/mol |
131 193@LB@ | |@LB@5'-ACA...CAUAU UGUU CA C UAU CAACA...CGC-3'@LB@ UUUAUUAAU UAUU ACA UGUCCGC AGUAA UCCAUAU@LB@ ||:||:||: :||| ||| ||||||| ||:|| |||||||@LB@ AAGUAGUUG GUAA UGU ACAGGCG UCGUU AGGUAUA@LB@3'-AUU...AUGAG UCCU C A CA UUACA...CAA-5'@LB@ | |@LB@ 182 121@LB@@LB@@LB@Energy -16.77 kcal/mol@LB@Hybridization Energy -30.4083 kcal/mol@LB@Unfolding Energy - mRNA 4.20108 kcal/mol@LB@Unfolding Energy - sRNA 10.3807 kcal/mol@LB@@LB@Position - mRNA 132 -- 192@LB@Position - sRNA 122 -- 181@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 122 -- 128@LB@ |
| 47 |
0.001488 |
0.1206 |
bsu18480 |
proH |
-12.75 |
0.095888 |
85 -- 112 |
155 -- 184 |
pyrroline-5-carboxylate reductase 1 |
bsu23800 |
_____________84_______________113\n_____________|________________|\n5'-AGC...UUUUC____________U___UAUUU...CAG-3'\n______________UGCUUUUCAUUA_ACA\n______________|:||:|||||:|_|||\n______________AUGAGAAGUAGU_UGU\n3'-AUU...AAAAA________________CCUGU...CAA-5'\n_____________|________________|\n_____________185______________154\n |
102 -- 108 |
158 -- 164 |
-13.4777 kcal/mol |
3.19807 kcal/mol |
1.41616 kcal/mol |
84 113@LB@ | |@LB@5'-AGC...UUUUC U UAUUU...CAG-3'@LB@ UGCUUUUCAUUA ACA@LB@ |:||:|||||:| |||@LB@ AUGAGAAGUAGU UGU@LB@3'-AUU...AAAAA CCUGU...CAA-5'@LB@ | |@LB@ 185 154@LB@@LB@@LB@Energy -12.75 kcal/mol@LB@Hybridization Energy -13.4777 kcal/mol@LB@Unfolding Energy - mRNA 3.19807 kcal/mol@LB@Unfolding Energy - sRNA 1.41616 kcal/mol@LB@@LB@Position - mRNA 85 -- 112@LB@Position - sRNA 155 -- 184@LB@Position Seed - mRNA 102 -- 108@LB@Position Seed - sRNA 158 -- 164@LB@ |
| 114 |
0.005219 |
0.1741 |
bsu18630 |
exlX |
-14.36 |
0.045196 |
231 -- 263 |
38 -- 88 |
expansin-YoaJ |
|
_____________230________________________________________________________264\n_____________|__________________________________________________________|\n5'-GGG...AGAUC_______CA_______GUA________UU________U____________________CAAGC...GUU-3'\n______________AUGAGUG__UUUGUUG___UGGUUUUG___GACGAUC___UCUGUUUU____UCCCCG\n______________||||:||__||:||||___:::|:|||___:||:|||___:|::|:|:____|||||:\n______________UACUUAC__AAGCAAC___GUUAGAAC___UUGUUAG___GGGUAGAG____AGGGGU\n3'-AUU...UUCAU_______CG__________________CGU_______CAU________AAUA______AAAGA...CAA-5'\n_____________|__________________________________________________________|\n_____________89_________________________________________________________37\n |
242 -- 248 |
59 -- 65 |
-36.6264 kcal/mol |
9.40493 kcal/mol |
14.3562 kcal/mol |
230 264@LB@ | |@LB@5'-GGG...AGAUC CA GUA UU U CAAGC...GUU-3'@LB@ AUGAGUG UUUGUUG UGGUUUUG GACGAUC UCUGUUUU UCCCCG@LB@ ||||:|| ||:|||| :::|:||| :||:||| :|::|:|: |||||:@LB@ UACUUAC AAGCAAC GUUAGAAC UUGUUAG GGGUAGAG AGGGGU@LB@3'-AUU...UUCAU CG CGU CAU AAUA AAAGA...CAA-5'@LB@ | |@LB@ 89 37@LB@@LB@@LB@Energy -14.36 kcal/mol@LB@Hybridization Energy -36.6264 kcal/mol@LB@Unfolding Energy - mRNA 9.40493 kcal/mol@LB@Unfolding Energy - sRNA 14.3562 kcal/mol@LB@@LB@Position - mRNA 231 -- 263@LB@Position - sRNA 38 -- 88@LB@Position Seed - mRNA 242 -- 248@LB@Position Seed - sRNA 59 -- 65@LB@ |
| 83 |
0.002931 |
0.1368 |
bsu18650 |
pelB |
-17.38 |
0.010445 |
17 -- 103 |
38 -- 142 |
pectin lyase |
|
_____________16________________________________________________________________________________________________________________104\n_____________|_________________________________________________________________________________________________________________|\n5'-AGG...UAAGC_________U_______G_____UCAA____________CUA_________________________A___U____UU__________________________AGUAA____ACAUU...CAA-3'\n______________UG_CUGCAG_CAA___C_GUGUA______UC_CUUUCUU___UUUCAA______________UUGUU_GUA_GUCU__UGGC__GCAAUC___UCUAUUUUUUA_____CCCA\n______________||_|:||||_|||___|_:|:||______||_||||||:___:|||||______________|:|||_|:|_:|||__||||__:|||||___:|:||:|:|||_____||||\n______________AC_GGCGUC_GUU___G_UAUAU______AG_GAAAGAG___GAAGUU______________AGCAA_CGU_UAGA__ACCG__UGUUAG___GGGUAGAGAAU_____GGGU\n3'-AUU...CUGUA__A__________CAA_G_____UACAAC__U_______UA_______UCAUUACUUACCGA____________________UU______CAU___________AAG______AAAGA...CAA-5'\n_____________|_________________________________________________________________________________________________________________|\n_____________143_______________________________________________________________________________________________________________37\n |
42 -- 48 |
105 -- 111 |
-52.303 kcal/mol |
11.0023 kcal/mol |
27.6117 kcal/mol |
16 104@LB@ | |@LB@5'-AGG...UAAGC U G UCAA CUA A U UU AGUAA ACAUU...CAA-3'@LB@ UG CUGCAG CAA C GUGUA UC CUUUCUU UUUCAA UUGUU GUA GUCU UGGC GCAAUC UCUAUUUUUUA CCCA@LB@ || |:|||| ||| | :|:|| || ||||||: :||||| |:||| |:| :||| |||| :||||| :|:||:|:||| ||||@LB@ AC GGCGUC GUU G UAUAU AG GAAAGAG GAAGUU AGCAA CGU UAGA ACCG UGUUAG GGGUAGAGAAU GGGU@LB@3'-AUU...CUGUA A CAA G UACAAC U UA UCAUUACUUACCGA UU CAU AAG AAAGA...CAA-5'@LB@ | |@LB@ 143 37@LB@@LB@@LB@Energy -17.38 kcal/mol@LB@Hybridization Energy -52.303 kcal/mol@LB@Unfolding Energy - mRNA 11.0023 kcal/mol@LB@Unfolding Energy - sRNA 27.6117 kcal/mol@LB@@LB@Position - mRNA 17 -- 103@LB@Position - sRNA 38 -- 142@LB@Position Seed - mRNA 42 -- 48@LB@Position Seed - sRNA 105 -- 111@LB@ |
| 151 |
0.00683 |
0.1741 |
bsu18660 |
yoaM |
-13.14 |
0.080203 |
141 -- 183 |
39 -- 78 |
Evidence 4: Homologs of previously reported genes of unknown function |
bsu18880 bsu20490 |
_____________140________________________________184\n_____________|__________________________________|\n5'-UUU...UAAAU_______________CAAA__A____AAAA____UAAAA...AUA-3'\n______________GAACGAUCGU_CCCA____CU_CUUA____CCCC\n______________:|||:|||||_||||____||_||||____||||\n______________UUUGUUAGCA_GGGU____GA_GAAU____GGGG\n3'-AUU...AACCG__________U____A__________AA______UAAAG...CAA-5'\n_____________|__________________________________|\n_____________79_________________________________38\n |
154 -- 160 |
57 -- 63 |
-25.2857 kcal/mol |
3.90608 kcal/mol |
11.0213 kcal/mol |
140 184@LB@ | |@LB@5'-UUU...UAAAU CAAA A AAAA UAAAA...AUA-3'@LB@ GAACGAUCGU CCCA CU CUUA CCCC@LB@ :|||:||||| |||| || |||| ||||@LB@ UUUGUUAGCA GGGU GA GAAU GGGG@LB@3'-AUU...AACCG U A AA UAAAG...CAA-5'@LB@ | |@LB@ 79 38@LB@@LB@@LB@Energy -13.14 kcal/mol@LB@Hybridization Energy -25.2857 kcal/mol@LB@Unfolding Energy - mRNA 3.90608 kcal/mol@LB@Unfolding Energy - sRNA 11.0213 kcal/mol@LB@@LB@Position - mRNA 141 -- 183@LB@Position - sRNA 39 -- 78@LB@Position Seed - mRNA 154 -- 160@LB@Position Seed - sRNA 57 -- 63@LB@ |
| 190 |
0.008698 |
0.1751 |
bsu19130 |
yocA |
-15.61 |
0.024807 |
4 -- 94 |
40 -- 127 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; Product type h: extrachromosomal origin' |
|
_____________3___________________________________________________________________________________________________95\n_____________|___________________________________________________________________________________________________|\n________5'-CAG_______UA_______C_______UA_____U___UUUAUCUUAUAACAAA__________AGU______CA_________________A_________AAUCU...ACC-3'\n______________UCAUAUG______UCA_CUUUCUU___UUCA_AGU________________UGCG__CUUG___GCAAAC______GCCUG___CUUGU_UUCCAUUUC\n______________:|||||:______|||_||||||:___||||_|||________________|||:__||||___||||||______:||::___|||:|_::|||||||\n______________GGUAUAU______AGU_GAAAGAG___AAGU_UCA________________ACGU__GAAC___CGUUUG______UGGGU___GAAUA_GGGGUAAAG\n3'-AUU...UUCAA_______UACAAC___________UAG____U___UUACUUACCGAAGCA_____UA_____________UUAGCA_____AGA_____A_________AAACU...CAA-5'\n_____________|___________________________________________________________________________________________________|\n_____________128_________________________________________________________________________________________________39\n |
82 -- 88 |
34 -- 40 |
-43.0073 kcal/mol |
9.62595 kcal/mol |
23.221 kcal/mol |
3 95@LB@ | |@LB@ 5'-CAG UA C UA U UUUAUCUUAUAACAAA AGU CA A AAUCU...ACC-3'@LB@ UCAUAUG UCA CUUUCUU UUCA AGU UGCG CUUG GCAAAC GCCUG CUUGU UUCCAUUUC@LB@ :|||||: ||| ||||||: |||| ||| |||: |||| |||||| :||:: |||:| ::|||||||@LB@ GGUAUAU AGU GAAAGAG AAGU UCA ACGU GAAC CGUUUG UGGGU GAAUA GGGGUAAAG@LB@3'-AUU...UUCAA UACAAC UAG U UUACUUACCGAAGCA UA UUAGCA AGA A AAACU...CAA-5'@LB@ | |@LB@ 128 39@LB@@LB@@LB@Energy -15.61 kcal/mol@LB@Hybridization Energy -43.0073 kcal/mol@LB@Unfolding Energy - mRNA 9.62595 kcal/mol@LB@Unfolding Energy - sRNA 23.221 kcal/mol@LB@@LB@Position - mRNA 4 -- 94@LB@Position - sRNA 40 -- 127@LB@Position Seed - mRNA 82 -- 88@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 175 |
0.008121 |
0.1751 |
bsu19160 |
yocC |
-10.77 |
0.229075 |
5 -- 48 |
34 -- 79 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________4_________________________________________________49\n_____________|_________________________________________________|\n_______5'-UAAU___U_____AAUG___U________________CG_______CUU____ACAGG...UAU-3'\n______________UUG_UAAUC_____AA_CAAUCG___CCA_UUC__AUUCCUC___UUUC\n______________|||_:||||_____||_||||||___|||_:||__|||||:|___||||\n______________AAC_GUUAG_____UU_GUUAGC___GGU_GAG__UAAGGGG___AAAG\n3'-AUU...GAAGC_________AACCG__U______AUG___A___AA_______U______AAACU...CAA-5'\n_____________|_________________________________________________|\n_____________80________________________________________________33\n |
35 -- 41 |
39 -- 45 |
-25.1951 kcal/mol |
3.86331 kcal/mol |
13.8007 kcal/mol |
4 49@LB@ | |@LB@ 5'-UAAU U AAUG U CG CUU ACAGG...UAU-3'@LB@ UUG UAAUC AA CAAUCG CCA UUC AUUCCUC UUUC@LB@ ||| :|||| || |||||| ||| :|| |||||:| ||||@LB@ AAC GUUAG UU GUUAGC GGU GAG UAAGGGG AAAG@LB@3'-AUU...GAAGC AACCG U AUG A AA U AAACU...CAA-5'@LB@ | |@LB@ 80 33@LB@@LB@@LB@Energy -10.77 kcal/mol@LB@Hybridization Energy -25.1951 kcal/mol@LB@Unfolding Energy - mRNA 3.86331 kcal/mol@LB@Unfolding Energy - sRNA 13.8007 kcal/mol@LB@@LB@Position - mRNA 5 -- 48@LB@Position - sRNA 34 -- 79@LB@Position Seed - mRNA 35 -- 41@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 17 |
0.0005293 |
0.1011 |
bsu19390 |
yojN |
-14.35 |
0.045317 |
34 -- 87 |
125 -- 170 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; PubMedId: 15491156; Product type pe : enzyme' |
|
_____________33_______________________________________________________88\n_____________|________________________________________________________|\n5'-AAC...UGCAU_____A_____G____AGC_____AUUAUC_____AAC___AA_____________GUGCG...CUA-3'\n______________UUAUU_UUCAU_AACA___GGACG______UGACA____CC__GCGGCAA_UUCCG\n______________|||:|_|||||_||||___||||:______|||||____||__||:||||_||||:\n______________AAUGA_AAGUA_UUGU___CCUGU______ACUGU____GG__CGUCGUU_AAGGU\n3'-AUU...AAAAA_____G_____G____________A__________AACA___________C_____AUAUU...CAA-5'\n_____________|________________________________________________________|\n_____________171______________________________________________________124\n |
76 -- 82 |
131 -- 137 |
-33.3587 kcal/mol |
7.78061 kcal/mol |
10.3745 kcal/mol |
33 88@LB@ | |@LB@5'-AAC...UGCAU A G AGC AUUAUC AAC AA GUGCG...CUA-3'@LB@ UUAUU UUCAU AACA GGACG UGACA CC GCGGCAA UUCCG@LB@ |||:| ||||| |||| ||||: ||||| || ||:|||| ||||:@LB@ AAUGA AAGUA UUGU CCUGU ACUGU GG CGUCGUU AAGGU@LB@3'-AUU...AAAAA G G A AACA C AUAUU...CAA-5'@LB@ | |@LB@ 171 124@LB@@LB@@LB@Energy -14.35 kcal/mol@LB@Hybridization Energy -33.3587 kcal/mol@LB@Unfolding Energy - mRNA 7.78061 kcal/mol@LB@Unfolding Energy - sRNA 10.3745 kcal/mol@LB@@LB@Position - mRNA 34 -- 87@LB@Position - sRNA 125 -- 170@LB@Position Seed - mRNA 76 -- 82@LB@Position Seed - sRNA 131 -- 137@LB@ |
