60 |
0.001877 |
0.1212 |
bsu12040 |
yjdG |
-19.63 |
0.003403 |
61 -- 106 |
39 -- 81 |
N-acetyltransferase YjdG |
|
_____________60_______________________________________________107\n_____________|________________________________________________|\n5'-ACC...CUACC____UUU_____G_______UC___________AC____UCAA_____CUCAA...UAG-3'\n______________CGUU___GGUCU_GGCAAAC__UC__ACCUGUC__UCUU____UCCCC\n______________||||___::|||_|||||||__||__|||::||__||||____|||||\n______________GCAA___UUAGA_CCGUUUG__AG__UGGGUAG__AGAA____AGGGG\n3'-AUU...CCGAA____CG______A_______UU__CA_____________UA_______UAAAG...CAA-5'\n_____________|________________________________________________|\n_____________82_______________________________________________38\n |
85 -- 91 |
50 -- 56 |
-36.328 kcal/mol |
6.99682 kcal/mol |
13.0865 kcal/mol |
60 107@LB@ | |@LB@5'-ACC...CUACC UUU G UC AC UCAA CUCAA...UAG-3'@LB@ CGUU GGUCU GGCAAAC UC ACCUGUC UCUU UCCCC@LB@ |||| ::||| ||||||| || |||::|| |||| |||||@LB@ GCAA UUAGA CCGUUUG AG UGGGUAG AGAA AGGGG@LB@3'-AUU...CCGAA CG A UU CA UA UAAAG...CAA-5'@LB@ | |@LB@ 82 38@LB@@LB@@LB@Energy -19.63 kcal/mol@LB@Hybridization Energy -36.328 kcal/mol@LB@Unfolding Energy - mRNA 6.99682 kcal/mol@LB@Unfolding Energy - sRNA 13.0865 kcal/mol@LB@@LB@Position - mRNA 61 -- 106@LB@Position - sRNA 39 -- 81@LB@Position Seed - mRNA 85 -- 91@LB@Position Seed - sRNA 50 -- 56@LB@ |
4 |
0.0001192 |
0.08823 |
bsu12150 |
yjgB |
-21.60 |
0.001260 |
37 -- 72 |
32 -- 79 |
Evidence 5: No homology to any previously reported sequences; PubMedId: 1580552 |
|
_____________36_______________________________________________73\n_____________|________________________________________________|\n5'-CCU...UGUGA____UU_____C____________________C_______________GCUUU...CAG-3'\n______________UUGU__UCUUG_CAG__________CCAUCUC__AUUCCCC_UUUCUU\n______________|||:__|||||_||:__________|||||||__|||||||_||||||\n______________AACG__AGAAC_GUU__________GGUAGAG__UAAGGGG_AAAGAA\n3'-AUU...GAAGC____UU_____C___UGUUAGCAUG_______AA_______U______ACUUU...CAA-5'\n_____________|________________________________________________|\n_____________80_______________________________________________31\n |
60 -- 66 |
39 -- 45 |
-34.5565 kcal/mol |
2.03428 kcal/mol |
13.9015 kcal/mol |
36 73@LB@ | |@LB@5'-CCU...UGUGA UU C C GCUUU...CAG-3'@LB@ UUGU UCUUG CAG CCAUCUC AUUCCCC UUUCUU@LB@ |||: ||||| ||: ||||||| ||||||| ||||||@LB@ AACG AGAAC GUU GGUAGAG UAAGGGG AAAGAA@LB@3'-AUU...GAAGC UU C UGUUAGCAUG AA U ACUUU...CAA-5'@LB@ | |@LB@ 80 31@LB@@LB@@LB@Energy -21.60 kcal/mol@LB@Hybridization Energy -34.5565 kcal/mol@LB@Unfolding Energy - mRNA 2.03428 kcal/mol@LB@Unfolding Energy - sRNA 13.9015 kcal/mol@LB@@LB@Position - mRNA 37 -- 72@LB@Position - sRNA 32 -- 79@LB@Position Seed - mRNA 60 -- 66@LB@Position Seed - sRNA 39 -- 45@LB@ |
79 |
0.002683 |
0.1316 |
bsu12250 |
yjkB |
-15.23 |
0.029777 |
154 -- 245 |
42 -- 131 |
ABC transporter ATP-binding protein |
|
_____________153__________________________________________________________246\n_____________|____________________________________________________________|\n5'-AUA...UGAAA___GA__A_______GGAA__________AAACACAAAACAUACC_G_______C_____AGAUC...AGG-3'\n______________GGU__UU_UUGUAAU____GCAAACGAUC________________A_CCAUCUC___UUC\n______________||:__|:_|||:|||____||||||:|||________________|_|||||||___|||\n______________CCG__AG_AACGUUA____CGUUUGUUAG________________U_GGUAGAG___AAG\n3'-AUU...ACUUA___A___C_______GAAC__________CA_______________G_______AAU___GGGUA...CAA-5'\n_____________|____________________________________________________________|\n_____________132__________________________________________________________41\n |
235 -- 241 |
48 -- 54 |
-30.736 kcal/mol |
10.3673 kcal/mol |
9.19615 kcal/mol |
153 246@LB@ | |@LB@5'-AUA...UGAAA GA A GGAA AAACACAAAACAUACC G C AGAUC...AGG-3'@LB@ GGU UU UUGUAAU GCAAACGAUC A CCAUCUC UUC@LB@ ||: |: |||:||| ||||||:||| | ||||||| |||@LB@ CCG AG AACGUUA CGUUUGUUAG U GGUAGAG AAG@LB@3'-AUU...ACUUA A C GAAC CA G AAU GGGUA...CAA-5'@LB@ | |@LB@ 132 41@LB@@LB@@LB@Energy -15.23 kcal/mol@LB@Hybridization Energy -30.736 kcal/mol@LB@Unfolding Energy - mRNA 10.3673 kcal/mol@LB@Unfolding Energy - sRNA 9.19615 kcal/mol@LB@@LB@Position - mRNA 154 -- 245@LB@Position - sRNA 42 -- 131@LB@Position Seed - mRNA 235 -- 241@LB@Position Seed - sRNA 48 -- 54@LB@ |
59 |
0.001868 |
0.1212 |
bsu12260 |
yjlA |
-14.41 |
0.044077 |
46 -- 133 |
103 -- 182 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; PubMedId: 15849754 16850406; Product type pt: transporter' |
|
_____________45__________________________________________________________________134\n_____________|___________________________________________________________________|\n5'-CGG...UGUCU_____UC_______UUCACCUCCCUUUU______UCCACAUAUA_____UCG_____AAC_______UUUUC...GGA-3'\n______________CUCUU__CAUCAAU______________UUGUCU__________GCGGU_____CCA___AUGAUGU\n______________|||||__||||||:______________|||||:__________||:|:_____|||___||:||||\n______________GAGAA__GUAGUUG______________AACAGG__________CGUCG_____GGU___UAUUACA\n3'-AUU...AAAAU______________UCCUGUAACUGU_______________________UUCAA___A_________ACAGU...CAA-5'\n_____________|___________________________________________________________________|\n_____________183_________________________________________________________________102\n |
118 -- 124 |
117 -- 123 |
-27.4081 kcal/mol |
7.08838 kcal/mol |
10.6441 kcal/mol |
45 134@LB@ | |@LB@5'-CGG...UGUCU UC UUCACCUCCCUUUU UCCACAUAUA UCG AAC UUUUC...GGA-3'@LB@ CUCUU CAUCAAU UUGUCU GCGGU CCA AUGAUGU@LB@ ||||| ||||||: |||||: ||:|: ||| ||:||||@LB@ GAGAA GUAGUUG AACAGG CGUCG GGU UAUUACA@LB@3'-AUU...AAAAU UCCUGUAACUGU UUCAA A ACAGU...CAA-5'@LB@ | |@LB@ 183 102@LB@@LB@@LB@Energy -14.41 kcal/mol@LB@Hybridization Energy -27.4081 kcal/mol@LB@Unfolding Energy - mRNA 7.08838 kcal/mol@LB@Unfolding Energy - sRNA 10.6441 kcal/mol@LB@@LB@Position - mRNA 46 -- 133@LB@Position - sRNA 103 -- 182@LB@Position Seed - mRNA 118 -- 124@LB@Position Seed - sRNA 117 -- 123@LB@ |
145 |
0.006739 |
0.1741 |
bsu12460 |
xlyB |
-11.80 |
0.146979 |
21 -- 64 |
155 -- 186 |
N-acetylmuramoyl-L-alanine amidase XlyB |
bsu12810 bsu25710 bsu25900 bsu21410 |
_____________20____________________________________65\n_____________|_____________________________________|\n5'-UCC...CCACA_____C_G_____AUUUCUC____CU_______A___UUAAA...CGG-3'\n______________UGCUC_U_AUUAA_______CGUU__CAUUGUC_GCA\n______________|:|||_|_||:||_______|:||__|||||||_|||\n______________AUGAG_A_UAGUU_______GUAA__GUAACAG_CGU\n3'-AUU...AAAAA_____A_G_____GUCCU______CU_______G___CGUUC...CAA-5'\n_____________|_____________________________________|\n_____________187___________________________________154\n |
54 -- 60 |
139 -- 145 |
-22.5299 kcal/mol |
4.58402 kcal/mol |
8.54622 kcal/mol |
20 65@LB@ | |@LB@5'-UCC...CCACA C G AUUUCUC CU A UUAAA...CGG-3'@LB@ UGCUC U AUUAA CGUU CAUUGUC GCA@LB@ |:||| | ||:|| |:|| ||||||| |||@LB@ AUGAG A UAGUU GUAA GUAACAG CGU@LB@3'-AUU...AAAAA A G GUCCU CU G CGUUC...CAA-5'@LB@ | |@LB@ 187 154@LB@@LB@@LB@Energy -11.80 kcal/mol@LB@Hybridization Energy -22.5299 kcal/mol@LB@Unfolding Energy - mRNA 4.58402 kcal/mol@LB@Unfolding Energy - sRNA 8.54622 kcal/mol@LB@@LB@Position - mRNA 21 -- 64@LB@Position - sRNA 155 -- 186@LB@Position Seed - mRNA 54 -- 60@LB@Position Seed - sRNA 139 -- 145@LB@ |
156 |
0.007194 |
0.1751 |
bsu12900 |
htrA |
-15.16 |
0.030869 |
26 -- 118 |
38 -- 130 |
serine protease Do-like HtrA |
|
_____________25_______________________________________________________________________________________________________119\n_____________|________________________________________________________________________________________________________|\n5'-CUG...AAUCU_______CGACUCA__________A___A_____U________GU__AC____UUCC___C____UC_________U_______AA____UUCAUUUUUA____ACAGU...AUG-3'\n______________GUUCCAU________GUC_CUUUC_UAU___CAA____AUGAA__GU__CGUU____GCA_UUUU_____ACAAUU___CCCAU__UCUU__________UCCC\n______________|||||||________|||_|||||_:||___|||____|||||__|:__||||____|||_|:||_____|||||:___|||||__||||__________||||\n______________CAAGGUA________CAG_GAAAG_GUA___GUU____UACUU__CG__GCAA____CGU_AGAA_____UGUUAG___GGGUA__AGAA__________AGGG\n3'-AUU...UCGUU_______UAUUACAA___U_____A___GAA___UCAU_____AC__AA___________U____CCGUU______CAU_____G_____UA____________GUAAA...CAA-5'\n_____________|________________________________________________________________________________________________________|\n_____________131______________________________________________________________________________________________________37\n |
26 -- 32 |
124 -- 130 |
-40.6941 kcal/mol |
8.96571 kcal/mol |
22.8172 kcal/mol |
25 119@LB@ | |@LB@5'-CUG...AAUCU CGACUCA A A U GU AC UUCC C UC U AA UUCAUUUUUA ACAGU...AUG-3'@LB@ GUUCCAU GUC CUUUC UAU CAA AUGAA GU CGUU GCA UUUU ACAAUU CCCAU UCUU UCCC@LB@ ||||||| ||| ||||| :|| ||| ||||| |: |||| ||| |:|| |||||: ||||| |||| ||||@LB@ CAAGGUA CAG GAAAG GUA GUU UACUU CG GCAA CGU AGAA UGUUAG GGGUA AGAA AGGG@LB@3'-AUU...UCGUU UAUUACAA U A GAA UCAU AC AA U CCGUU CAU G UA GUAAA...CAA-5'@LB@ | |@LB@ 131 37@LB@@LB@@LB@Energy -15.16 kcal/mol@LB@Hybridization Energy -40.6941 kcal/mol@LB@Unfolding Energy - mRNA 8.96571 kcal/mol@LB@Unfolding Energy - sRNA 22.8172 kcal/mol@LB@@LB@Position - mRNA 26 -- 118@LB@Position - sRNA 38 -- 130@LB@Position Seed - mRNA 26 -- 32@LB@Position Seed - sRNA 124 -- 130@LB@ |
95 |
0.003784 |
0.1541 |
bsu12910 |
proG |
-16.76 |
0.014152 |
1 -- 50 |
33 -- 83 |
pyrroline-5-carboxylate reductase 3 |
|
______________1______________________________________________________51\n______________|______________________________________________________|\n___________5'-________U_________UC_____A_U________A_______A_U________CUAUU...UUG-3'\n______________UUCGUU_C_GUUUU__CA__ACGAU_G_UAUCCAUC___UGUUC_C_CCGUUUCU\n______________||||||_|_:|:||__||__||:||_|_||:|||||___|:|||_|_||:|||||\n______________AAGCAA_G_UAGAA__GU__UGUUA_C_AUGGGUAG___AUAAG_G_GGUAAAGA\n3'-AUU...UACCG______C_U_____CC__U______G__________AGA________________AACUU...CAA-5'\n_____________|_______________________________________________________|\n_____________84______________________________________________________32\n |
44 -- 50 |
33 -- 39 |
-32.4348 kcal/mol |
4.82786 kcal/mol |
13.9589 kcal/mol |
1 51@LB@ | |@LB@ 5'- U UC A U A A U CUAUU...UUG-3'@LB@ UUCGUU C GUUUU CA ACGAU G UAUCCAUC UGUUC C CCGUUUCU@LB@ |||||| | :|:|| || ||:|| | ||:||||| |:||| | ||:|||||@LB@ AAGCAA G UAGAA GU UGUUA C AUGGGUAG AUAAG G GGUAAAGA@LB@3'-AUU...UACCG C U CC U G AGA AACUU...CAA-5'@LB@ | |@LB@ 84 32@LB@@LB@@LB@Energy -16.76 kcal/mol@LB@Hybridization Energy -32.4348 kcal/mol@LB@Unfolding Energy - mRNA 4.82786 kcal/mol@LB@Unfolding Energy - sRNA 13.9589 kcal/mol@LB@@LB@Position - mRNA 1 -- 50@LB@Position - sRNA 33 -- 83@LB@Position Seed - mRNA 44 -- 50@LB@Position Seed - sRNA 33 -- 39@LB@ |
193 |
0.008782 |
0.1751 |
bsu13160 |
ohrB |
-9.78 |
0.341127 |
32 -- 61 |
100 -- 129 |
organic hydroperoxide resistance protein OhrB |
|
_____________31_________62\n_____________|__________|\n5'-CAU...GGACG__________AUUAC...AUG-3'\n______________AGCAGGACAU\n______________|:||||||||\n______________UUGUCCUGUA\n3'-AUU...AGUAG__________ACUGU...CAA-5'\n_____________|__________|\n_____________130________99\n |
245 -- 251 |
149 -- 155 |
-15.2334 kcal/mol |
1.87143 kcal/mol |
5.55277 kcal/mol |
31 62@LB@ | |@LB@5'-CAU...GGACG AUUAC...AUG-3'@LB@ AGCAGGACAU@LB@ |:||||||||@LB@ UUGUCCUGUA@LB@3'-AUU...AGUAG ACUGU...CAA-5'@LB@ | |@LB@ 130 99@LB@@LB@@LB@Energy -9.78 kcal/mol@LB@Hybridization Energy -15.2334 kcal/mol@LB@Unfolding Energy - mRNA 1.87143 kcal/mol@LB@Unfolding Energy - sRNA 5.55277 kcal/mol@LB@@LB@Position - mRNA 32 -- 61@LB@Position - sRNA 100 -- 129@LB@Position Seed - mRNA 245 -- 251@LB@Position Seed - sRNA 149 -- 155@LB@ |
2 |
6.323e-05 |
0.08823 |
bsu13370 |
ykoQ |
-21.23 |
0.001523 |
8 -- 146 |
40 -- 170 |
metallophosphoesterase |
|
_____________7_______________________________________________________________________________________________________________________________________________________147\n_____________|_______________________________________________________________________________________________________________________________________________________|\n____5'-CGUAACA______ACA____C__UUGU___UC____________U_____U_____GCCUC_________AAA_______A__CCUUUUCC__________CAAAU__U__AUCAUAU______C___UUUUCA__________ACCCAUUA______GCUAU...CAA-3'\n______________UUGCUU___CAUC_AU____UAU__UGAC____UCCG_CGGCA_GUUCU_____AUG_UGUCA____UUUAUU_UC______________CUUC_____CA_UC_______GACAAU_CGU______ACCUGUCUCU________AUUCCC\n______________||:||:___||||_|:____:||__||||____||||_|:|||_||||:_____|||_|||||____:|:||:_||______________||||_____||_||_______:|||||_|||______|||::|||||________||||||\n______________AAUGAG___GUAG_UG____GUA__ACUG____AGGC_GUCGU_CAAGG_____UAC_ACAGU____GAGUAG_AG______________GAAG_____GU_AG_______UUGUUA_GCA______UGGGUAGAGA________UAAGGG\n3'-AUU...AAAAA______AA_____U__UCCU_________UAAC__________U_____UAUAU___A_____GAAA______A__UUUCAUUACUUACC____CAAC___U__AACCGU___________________________A_____________GUAAA...CAA-5'\n_____________|_______________________________________________________________________________________________________________________________________________________|\n_____________171_____________________________________________________________________________________________________________________________________________________39\n |
126 -- 132 |
47 -- 53 |
-61.8379 kcal/mol |
13.5948 kcal/mol |
30.7766 kcal/mol |
7 147@LB@ | |@LB@ 5'-CGUAACA ACA C UUGU UC U U GCCUC AAA A CCUUUUCC CAAAU U AUCAUAU C UUUUCA ACCCAUUA GCUAU...CAA-3'@LB@ UUGCUU CAUC AU UAU UGAC UCCG CGGCA GUUCU AUG UGUCA UUUAUU UC CUUC CA UC GACAAU CGU ACCUGUCUCU AUUCCC@LB@ ||:||: |||| |: :|| |||| |||| |:||| ||||: ||| ||||| :|:||: || |||| || || :||||| ||| |||::||||| ||||||@LB@ AAUGAG GUAG UG GUA ACUG AGGC GUCGU CAAGG UAC ACAGU GAGUAG AG GAAG GU AG UUGUUA GCA UGGGUAGAGA UAAGGG@LB@3'-AUU...AAAAA AA U UCCU UAAC U UAUAU A GAAA A UUUCAUUACUUACC CAAC U AACCGU A GUAAA...CAA-5'@LB@ | |@LB@ 171 39@LB@@LB@@LB@Energy -21.23 kcal/mol@LB@Hybridization Energy -61.8379 kcal/mol@LB@Unfolding Energy - mRNA 13.5948 kcal/mol@LB@Unfolding Energy - sRNA 30.7766 kcal/mol@LB@@LB@Position - mRNA 8 -- 146@LB@Position - sRNA 40 -- 170@LB@Position Seed - mRNA 126 -- 132@LB@Position Seed - sRNA 47 -- 53@LB@ |
170 |
0.007871 |
0.1751 |
bsu13520 |
ykrP |
-11.14 |
0.196181 |
76 -- 136 |
99 -- 167 |
membrane-bound acyltransferase YkrP |
|
_____________75____________137\n_____________|_____________|\n5'-GGA...CCGUC_____A_______CUAAC...AUC-3'\n______________ACUUU_CAUCGAC\n______________|||:|_||||:||\n______________UGAGA_GUAGUUG\n3'-AUU...AAAAA_____A_______UCCUG...CAA-5'\n_____________|_____________|\n_____________168___________98\n |
91 -- 97 |
156 -- 162 |
-12.1838 kcal/mol |
0.966795 kcal/mol |
1.40592 kcal/mol |
75 137@LB@ | |@LB@5'-GGA...CCGUC A CUAAC...AUC-3'@LB@ ACUUU CAUCGAC@LB@ |||:| ||||:||@LB@ UGAGA GUAGUUG@LB@3'-AUU...AAAAA A UCCUG...CAA-5'@LB@ | |@LB@ 168 98@LB@@LB@@LB@Energy -11.14 kcal/mol@LB@Hybridization Energy -12.1838 kcal/mol@LB@Unfolding Energy - mRNA 0.966795 kcal/mol@LB@Unfolding Energy - sRNA 1.40592 kcal/mol@LB@@LB@Position - mRNA 76 -- 136@LB@Position - sRNA 99 -- 167@LB@Position Seed - mRNA 91 -- 97@LB@Position Seed - sRNA 156 -- 162@LB@ |