153 |
0.007014 |
0.1751 |
bsu10400 |
yhxC |
-16.66 |
0.014878 |
138 -- 167 |
138 -- 167 |
oxidoreductase |
|
_____________137____________________________168\n_____________|______________________________|\n5'-UCC...UCUAU________AC______AGCA__________AUAAC...CGA-3'\n______________CUUUUCAU__AUAGGA____GGCAUUGUUC\n______________||:|||||__|:||||____|:||||||:|\n______________GAGAAGUA__UGUCCU____CUGUAACAGG\n3'-AUU...AAAAU________GU______GUAA__________CGUCG...CAA-5'\n_____________|______________________________|\n_____________168____________________________137\n |
161 -- 167 |
138 -- 144 |
-29.0079 kcal/mol |
5.02609 kcal/mol |
7.37082 kcal/mol |
137 168@LB@ | |@LB@5'-UCC...UCUAU AC AGCA AUAAC...CGA-3'@LB@ CUUUUCAU AUAGGA GGCAUUGUUC@LB@ ||:||||| |:|||| |:||||||:|@LB@ GAGAAGUA UGUCCU CUGUAACAGG@LB@3'-AUU...AAAAU GU GUAA CGUCG...CAA-5'@LB@ | |@LB@ 168 137@LB@@LB@@LB@Energy -16.66 kcal/mol@LB@Hybridization Energy -29.0079 kcal/mol@LB@Unfolding Energy - mRNA 5.02609 kcal/mol@LB@Unfolding Energy - sRNA 7.37082 kcal/mol@LB@@LB@Position - mRNA 138 -- 167@LB@Position - sRNA 138 -- 167@LB@Position Seed - mRNA 161 -- 167@LB@Position Seed - sRNA 138 -- 144@LB@ |
102 |
0.004212 |
0.1594 |
bsu10510 |
yhjH |
-17.94 |
0.007893 |
238 -- 265 |
152 -- 183 |
MarR family transcriptional regulator |
|
_____________237________________266\n_____________|__________________|\n5'-GCA...GCGGA____A_____________GAAAU...CUG-3'\n______________GCUC_UUCAUCAGCAGGA\n______________:|||_|||||||:|||||\n______________UGAG_AAGUAGUUGUCCU\n3'-AUU...AAAAA__________________GUAAC...CAA-5'\n_____________|__________________|\n_____________184________________151\n |
259 -- 265 |
152 -- 158 |
-25.8948 kcal/mol |
5.0064 kcal/mol |
6.06644 kcal/mol |
237 266@LB@ | |@LB@5'-GCA...GCGGA A GAAAU...CUG-3'@LB@ GCUC UUCAUCAGCAGGA@LB@ :||| |||||||:|||||@LB@ UGAG AAGUAGUUGUCCU@LB@3'-AUU...AAAAA GUAAC...CAA-5'@LB@ | |@LB@ 184 151@LB@@LB@@LB@Energy -17.94 kcal/mol@LB@Hybridization Energy -25.8948 kcal/mol@LB@Unfolding Energy - mRNA 5.0064 kcal/mol@LB@Unfolding Energy - sRNA 6.06644 kcal/mol@LB@@LB@Position - mRNA 238 -- 265@LB@Position - sRNA 152 -- 183@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 152 -- 158@LB@ |
72 |
0.002326 |
0.1242 |
bsu10730 |
yisI |
-10.35 |
0.272902 |
44 -- 108 |
96 -- 182 |
aspartyl-phosphate phosphatase YisI |
|
_____________43___________________________________109\n_____________|____________________________________|\n5'-UAG...AAAGG_________AAA________________________GUCAA...UGG-3'\n______________CCGCAGCAA_____________UUGUCGCUUUUUUA\n______________|||||||||_____________|||||:||||:|:|\n______________GGCGUCGUU_____________AACAGUGAAAGAGU\n3'-AUU...UAACA_________CAAGGUAUAUUAC______________AGAAG...CAA-5'\n_____________|____________________________________|\n_____________183__________________________________95\n |
90 -- 96 |
110 -- 116 |
-28.3207 kcal/mol |
8.15126 kcal/mol |
10.3722 kcal/mol |
43 109@LB@ | |@LB@5'-UAG...AAAGG AAA GUCAA...UGG-3'@LB@ CCGCAGCAA UUGUCGCUUUUUUA@LB@ ||||||||| |||||:||||:|:|@LB@ GGCGUCGUU AACAGUGAAAGAGU@LB@3'-AUU...UAACA CAAGGUAUAUUAC AGAAG...CAA-5'@LB@ | |@LB@ 183 95@LB@@LB@@LB@Energy -10.35 kcal/mol@LB@Hybridization Energy -28.3207 kcal/mol@LB@Unfolding Energy - mRNA 8.15126 kcal/mol@LB@Unfolding Energy - sRNA 10.3722 kcal/mol@LB@@LB@Position - mRNA 44 -- 108@LB@Position - sRNA 96 -- 182@LB@Position Seed - mRNA 90 -- 96@LB@Position Seed - sRNA 110 -- 116@LB@ |
6 |
0.0001543 |
0.08823 |
bsu10740 |
yisJ |
-16.00 |
0.020473 |
36 -- 139 |
34 -- 134 |
inner spore coat protein H-like protein |
|
_____________35____________________________________________________140\n_____________|_____________________________________________________|\n5'-GGC...GUUCC______GCAAAUUUCAUG_______U____CA_____U____C__________CCUUC...UUC-3'\n______________CCUGUC____________UUAUUCC_CCAU__UCUUU_AAAU___AGAAUGCU\n______________||::||____________|||||||_||||__|||||_||||___|:||:|||\n______________GGGUAG____________AAUAAGG_GGUA__AGAAA_UUUA___UUUUGCGA\n3'-AUU...AGCAU______AG______________________A______C____AAC________AUUAA...CAA-5'\n_____________|_____________________________________________________|\n_____________135___________________________________________________33\n |
74 -- 80 |
15 -- 21 |
-28.1573 kcal/mol |
3.71522 kcal/mol |
11.7008 kcal/mol |
35 140@LB@ | |@LB@5'-GGC...GUUCC GCAAAUUUCAUG U CA U C CCUUC...UUC-3'@LB@ CCUGUC UUAUUCC CCAU UCUUU AAAU AGAAUGCU@LB@ ||::|| ||||||| |||| ||||| |||| |:||:|||@LB@ GGGUAG AAUAAGG GGUA AGAAA UUUA UUUUGCGA@LB@3'-AUU...AGCAU AG A C AAC AUUAA...CAA-5'@LB@ | |@LB@ 135 33@LB@@LB@@LB@Energy -16.00 kcal/mol@LB@Hybridization Energy -28.1573 kcal/mol@LB@Unfolding Energy - mRNA 3.71522 kcal/mol@LB@Unfolding Energy - sRNA 11.7008 kcal/mol@LB@@LB@Position - mRNA 36 -- 139@LB@Position - sRNA 34 -- 134@LB@Position Seed - mRNA 74 -- 80@LB@Position Seed - sRNA 15 -- 21@LB@ |
166 |
0.007737 |
0.1751 |
bsu10770 |
wprA |
-9.60 |
0.364837 |
176 -- 232 |
111 -- 164 |
cell wall-associated protease |
|
_____________175_________________________________________________________233\n_____________|___________________________________________________________|\n5'-CUG...GGAGA_______UUUU______G_GAUA____GAAA_____AAAA_____GCUCG______G__GGCAG...GCG-3'\n______________UUCAUUA____GCAGGA_G____ACAU____CGCAG_____UUCA______GUUGU_GC\n______________|||||:|____:|||||_:____||||____|||||_____|:||______|||||_:|\n______________AAGUAGU____UGUCCU_U____UGUA____GCGUC_____AGGU______CAACA_UG\n3'-AUU...AUGAG_________________G_AAC_____ACAG_____GUUCA____AUAUUA_____G__AAAGA...CAA-5'\n_____________|___________________________________________________________|\n_____________165_________________________________________________________110\n |
176 -- 182 |
158 -- 164 |
-36.1081 kcal/mol |
15.1078 kcal/mol |
11.9485 kcal/mol |
175 233@LB@ | |@LB@5'-CUG...GGAGA UUUU G GAUA GAAA AAAA GCUCG G GGCAG...GCG-3'@LB@ UUCAUUA GCAGGA G ACAU CGCAG UUCA GUUGU GC@LB@ |||||:| :||||| : |||| ||||| |:|| ||||| :|@LB@ AAGUAGU UGUCCU U UGUA GCGUC AGGU CAACA UG@LB@3'-AUU...AUGAG G AAC ACAG GUUCA AUAUUA G AAAGA...CAA-5'@LB@ | |@LB@ 165 110@LB@@LB@@LB@Energy -9.60 kcal/mol@LB@Hybridization Energy -36.1081 kcal/mol@LB@Unfolding Energy - mRNA 15.1078 kcal/mol@LB@Unfolding Energy - sRNA 11.9485 kcal/mol@LB@@LB@Position - mRNA 176 -- 232@LB@Position - sRNA 111 -- 164@LB@Position Seed - mRNA 176 -- 182@LB@Position Seed - sRNA 158 -- 164@LB@ |
106 |
0.004415 |
0.1614 |
bsu10790 |
asnO |
-17.17 |
0.011578 |
3 -- 52 |
32 -- 73 |
asparagine synthetase 3 |
|
_____________2__________________________________________________53\n_____________|__________________________________________________|\n_________5'-CC___GUAUAU_________U________AUCCAUGCUG_____UU______CAUUC...CUG-3'\n______________UCU______AACAAUUGU_UCCGUUUC__________UCUCC__UUUCUU\n______________|||______||||||:||_:||:|:||__________||:||__||||||\n______________AGA______UUGUUAGCA_GGGUAGAG__________AGGGG__AAAGAA\n3'-AUU...ACGUU___ACCGU__________U________AAUA___________U_______ACUUU...CAA-5'\n_____________|__________________________________________________|\n_____________74_________________________________________________31\n |
23 -- 29 |
48 -- 54 |
-28.5385 kcal/mol |
1.12136 kcal/mol |
12.9474 kcal/mol |
2 53@LB@ | |@LB@ 5'-CC GUAUAU U AUCCAUGCUG UU CAUUC...CUG-3'@LB@ UCU AACAAUUGU UCCGUUUC UCUCC UUUCUU@LB@ ||| ||||||:|| :||:|:|| ||:|| ||||||@LB@ AGA UUGUUAGCA GGGUAGAG AGGGG AAAGAA@LB@3'-AUU...ACGUU ACCGU U AAUA U ACUUU...CAA-5'@LB@ | |@LB@ 74 31@LB@@LB@@LB@Energy -17.17 kcal/mol@LB@Hybridization Energy -28.5385 kcal/mol@LB@Unfolding Energy - mRNA 1.12136 kcal/mol@LB@Unfolding Energy - sRNA 12.9474 kcal/mol@LB@@LB@Position - mRNA 3 -- 52@LB@Position - sRNA 32 -- 73@LB@Position Seed - mRNA 23 -- 29@LB@Position Seed - sRNA 48 -- 54@LB@ |
107 |
0.004539 |
0.1633 |
bsu11020 |
yitK |
-8.14 |
0.595243 |
151 -- 171 |
155 -- 171 |
nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription |
|
_____________150___________________172\n_____________|_____________________|\n5'-ACC...UUCUC________ACUAUA_______CAUAA...AUG-3'\n______________UUUAUUCU______AUCAACA\n______________||||:|||______|||||||\n______________AAAUGAGA______UAGUUGU\n3'-AUU...AAAAA________AG___________CCUGU...CAA-5'\n_____________|_____________________|\n_____________172___________________154\n |
165 -- 171 |
155 -- 161 |
-10.3591 kcal/mol |
1.70839 kcal/mol |
1.4241 kcal/mol |
150 172@LB@ | |@LB@5'-ACC...UUCUC ACUAUA CAUAA...AUG-3'@LB@ UUUAUUCU AUCAACA@LB@ ||||:||| |||||||@LB@ AAAUGAGA UAGUUGU@LB@3'-AUU...AAAAA AG CCUGU...CAA-5'@LB@ | |@LB@ 172 154@LB@@LB@@LB@Energy -8.14 kcal/mol@LB@Hybridization Energy -10.3591 kcal/mol@LB@Unfolding Energy - mRNA 1.70839 kcal/mol@LB@Unfolding Energy - sRNA 1.4241 kcal/mol@LB@@LB@Position - mRNA 151 -- 171@LB@Position - sRNA 155 -- 171@LB@Position Seed - mRNA 165 -- 171@LB@Position Seed - sRNA 155 -- 161@LB@ |
160 |
0.007403 |
0.1751 |
bsu11139 |
yizC |
-17.39 |
0.010400 |
11 -- 81 |
42 -- 107 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________10____________________________________________________________________________82\n_____________|_____________________________________________________________________________|\n5'-UUG...GACGA_______CG________UG______GG____________CAAAAUG_________AGCAA_____GAAGG_______AGCAG...UGA-3'\n______________CUCAUCU__UCAAAGUA__GAA_GG_______GCAGUCU_______GGUAAACGA_____AUCCA_____UUUAUUC\n______________|||||||__||||||||__|||_||_______|||:|||_______||:||||:|_____|:|||_____:||||||\n______________GAGUAGA__AGUUUCAU__CUU_CC_______CGUUAGA_______CCGUUUGUU_____UGGGU_____GAAUAAG\n3'-AUU...UGAAA_________________UA___A__GAAGCAA_______A_______________AGCA______AGA_________GGGUA...CAA-5'\n_____________|_____________________________________________________________________________|\n_____________108___________________________________________________________________________41\n |
75 -- 81 |
42 -- 48 |
-46.4368 kcal/mol |
15.8344 kcal/mol |
18.2654 kcal/mol |
10 82@LB@ | |@LB@5'-UUG...GACGA CG UG GG CAAAAUG AGCAA GAAGG AGCAG...UGA-3'@LB@ CUCAUCU UCAAAGUA GAA GG GCAGUCU GGUAAACGA AUCCA UUUAUUC@LB@ ||||||| |||||||| ||| || |||:||| ||:||||:| |:||| :||||||@LB@ GAGUAGA AGUUUCAU CUU CC CGUUAGA CCGUUUGUU UGGGU GAAUAAG@LB@3'-AUU...UGAAA UA A GAAGCAA A AGCA AGA GGGUA...CAA-5'@LB@ | |@LB@ 108 41@LB@@LB@@LB@Energy -17.39 kcal/mol@LB@Hybridization Energy -46.4368 kcal/mol@LB@Unfolding Energy - mRNA 15.8344 kcal/mol@LB@Unfolding Energy - sRNA 18.2654 kcal/mol@LB@@LB@Position - mRNA 11 -- 81@LB@Position - sRNA 42 -- 107@LB@Position Seed - mRNA 75 -- 81@LB@Position Seed - sRNA 42 -- 48@LB@ |
101 |
0.004166 |
0.1594 |
bsu11270 |
yjzD |
-8.07 |
0.607351 |
275 -- 290 |
119 -- 136 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________274________________291\n_____________|__________________|\n5'-UAG...AUGAA________UA________UUCAA...CAU-3'\n______________CAGC__GU__CGUAUAAU\n______________||||__||__|:||||||\n______________GUCG__CA__GUAUAUUA\n3'-AUU...CAGGC____UU__AG________CAACA...CAA-5'\n_____________|__________________|\n_____________137________________118\n |
284 -- 290 |
119 -- 125 |
-12.692 kcal/mol |
1.37877 kcal/mol |
3.96273 kcal/mol |
274 291@LB@ | |@LB@5'-UAG...AUGAA UA UUCAA...CAU-3'@LB@ CAGC GU CGUAUAAU@LB@ |||| || |:||||||@LB@ GUCG CA GUAUAUUA@LB@3'-AUU...CAGGC UU AG CAACA...CAA-5'@LB@ | |@LB@ 137 118@LB@@LB@@LB@Energy -8.07 kcal/mol@LB@Hybridization Energy -12.692 kcal/mol@LB@Unfolding Energy - mRNA 1.37877 kcal/mol@LB@Unfolding Energy - sRNA 3.96273 kcal/mol@LB@@LB@Position - mRNA 275 -- 290@LB@Position - sRNA 119 -- 136@LB@Position Seed - mRNA 284 -- 290@LB@Position Seed - sRNA 119 -- 125@LB@ |
56 |
0.00183 |
0.1212 |
bsu11770 |
cotW |
-16.10 |
0.019548 |
48 -- 170 |
31 -- 163 |
spore coat protein W |
|
_____________47_______________________________________171\n_____________|________________________________________|\n5'-UCU...UAAAA__________CC__________CAAAAUUACUU_______CGACG...GGG-3'\n______________UUAUCAACAG__GCA___ACAU___________UGUCUGC\n______________|:||||||||__:||___||||___________||||:||\n______________AGUAGUUGUC__UGU___UGUA___________ACAGGCG\n3'-AUU...UGAGA__________C____AAC______________________UCGUU...CAA-5'\n_____________|________________________________________|\n_____________164______________________________________30\n |
78 -- 84 |
136 -- 142 |
-21.9263 kcal/mol |
4.68907 kcal/mol |
7.4131 kcal/mol |
47 171@LB@ | |@LB@5'-UCU...UAAAA CC CAAAAUUACUU CGACG...GGG-3'@LB@ UUAUCAACAG GCA ACAU UGUCUGC@LB@ |:|||||||| :|| |||| ||||:||@LB@ AGUAGUUGUC UGU UGUA ACAGGCG@LB@3'-AUU...UGAGA C AAC UCGUU...CAA-5'@LB@ | |@LB@ 164 30@LB@@LB@@LB@Energy -16.10 kcal/mol@LB@Hybridization Energy -21.9263 kcal/mol@LB@Unfolding Energy - mRNA 4.68907 kcal/mol@LB@Unfolding Energy - sRNA 7.4131 kcal/mol@LB@@LB@Position - mRNA 48 -- 170@LB@Position - sRNA 31 -- 163@LB@Position Seed - mRNA 78 -- 84@LB@Position Seed - sRNA 136 -- 142@LB@ |