| 48 |
0.0003226 |
0.03063 |
pa2507 |
catA |
-12.73 |
0.042466 |
203 -- 291 |
39 -- 120 |
catechol 1 2-dioxygenase |
|
_____________202_______________________________________________________________________________________________292\n_____________|_________________________________________________________________________________________________|\n5'-AUC...GCCAU________AGAUUUCCCAGACU________UCC__CGCU___UC______G__A______GCCAG______A_GA__G______________C____AGGCC...UGG-3'\n______________GACCGUGA______________GCC_GAUG___AG____UCU__GAAGAG_CC____GCG_______CUCA_C__AC_CGGC_GAUC_CGCG_ACCA\n______________:|||||||______________|||_||||___||____|||__||||||_||____|||_______||||_|__||_||||_||||_||||_||||\n______________UUGGCACU______________CGG_CUAC___UC____AGA__CUUCUC_GG____CGC_______GAGU_G__UG_GCCG_CUAG_GCGC_UGGU\n3'-UUU...AGUUU________AAU______________A____UCC__UAUU___________A__CUGA___ACCCAGA____C_AA_______A____A_________CAACU...GUU-5'\n_____________|_________________________________________________________________________________________________|\n_____________121_______________________________________________________________________________________________38\n |
204 -- 210 |
113 -- 119 |
-61.825 kcal/mol |
25.692 kcal/mol |
23.4063 kcal/mol |
202 292@LB@ | |@LB@5'-AUC...GCCAU AGAUUUCCCAGACU UCC CGCU UC G A GCCAG A GA G C AGGCC...UGG-3'@LB@ GACCGUGA GCC GAUG AG UCU GAAGAG CC GCG CUCA C AC CGGC GAUC CGCG ACCA@LB@ :||||||| ||| |||| || ||| |||||| || ||| |||| | || |||| |||| |||| ||||@LB@ UUGGCACU CGG CUAC UC AGA CUUCUC GG CGC GAGU G UG GCCG CUAG GCGC UGGU@LB@3'-UUU...AGUUU AAU A UCC UAUU A CUGA ACCCAGA C AA A A CAACU...GUU-5'@LB@ | |@LB@ 121 38@LB@@LB@@LB@Energy -12.73 kcal/mol@LB@Hybridization Energy -61.825 kcal/mol@LB@Unfolding Energy - mRNA 25.692 kcal/mol@LB@Unfolding Energy - sRNA 23.4063 kcal/mol@LB@@LB@Position - mRNA 203 -- 291@LB@Position - sRNA 39 -- 120@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 113 -- 119@LB@ |
| 83 |
0.001018 |
0.05635 |
pa1553 |
ccoO1 |
-12.95 |
0.037511 |
176 -- 198 |
75 -- 98 |
cbb3-type cytochrome C oxidase subunit II |
pa1556 |
_____________175______________________199\n_____________|________________________|\n5'-AAC...CGCGC____CGC________C________AAAUG...UGU-3'\n______________AGAU___CUGAGGAG_CCGAC_GU\n______________||||___||||:|||_|||||_|:\n______________UCUA___GACUUCUC_GGCUG_CG\n3'-UUU...ACUCC____UUA________A_____A__CACCC...GUU-5'\n_____________|________________________|\n_____________99_______________________74\n |
184 -- 190 |
84 -- 90 |
-23.7581 kcal/mol |
4.66617 kcal/mol |
6.14905 kcal/mol |
175 199@LB@ | |@LB@5'-AAC...CGCGC CGC C AAAUG...UGU-3'@LB@ AGAU CUGAGGAG CCGAC GU@LB@ |||| ||||:||| ||||| |:@LB@ UCUA GACUUCUC GGCUG CG@LB@3'-UUU...ACUCC UUA A A CACCC...GUU-5'@LB@ | |@LB@ 99 74@LB@@LB@@LB@Energy -12.95 kcal/mol@LB@Hybridization Energy -23.7581 kcal/mol@LB@Unfolding Energy - mRNA 4.66617 kcal/mol@LB@Unfolding Energy - sRNA 6.14905 kcal/mol@LB@@LB@Position - mRNA 176 -- 198@LB@Position - sRNA 75 -- 98@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 84 -- 90@LB@ |
| 191 |
0.005174 |
0.1243 |
pa4409 |
ftsQ |
-12.87 |
0.039132 |
188 -- 243 |
45 -- 102 |
cell division protein FtsQ |
|
_____________187__________________________________________________________244\n_____________|____________________________________________________________|\n5'-ACG...GAGGC__________GCCA____U____GU_____UCC____A______AAC_____G_______GCCGC...AAC-3'\n______________GAGGGGAUAA____UGAA_GG_C__ACUGC____GUC__UCAGC___CCGGU_GA_CUCG\n______________||||:|||||____||||_:|_|__|||||____|||__|||||___||||:_||_||||\n______________CUCCUCUAUU____ACUU_UC_G__UGACG____CAG__AGUCG___GGCCG_CU_GAGC\n3'-UUU...GACUA__________AG______C__A_GC_____CACC___AG_____AAU_____A__A____GCUGG...GUU-5'\n_____________|____________________________________________________________|\n_____________103__________________________________________________________44\n |
190 -- 196 |
94 -- 100 |
-51.9774 kcal/mol |
17.8775 kcal/mol |
21.2308 kcal/mol |
187 244@LB@ | |@LB@5'-ACG...GAGGC GCCA U GU UCC A AAC G GCCGC...AAC-3'@LB@ GAGGGGAUAA UGAA GG C ACUGC GUC UCAGC CCGGU GA CUCG@LB@ ||||:||||| |||| :| | ||||| ||| ||||| ||||: || ||||@LB@ CUCCUCUAUU ACUU UC G UGACG CAG AGUCG GGCCG CU GAGC@LB@3'-UUU...GACUA AG C A GC CACC AG AAU A A GCUGG...GUU-5'@LB@ | |@LB@ 103 44@LB@@LB@@LB@Energy -12.87 kcal/mol@LB@Hybridization Energy -51.9774 kcal/mol@LB@Unfolding Energy - mRNA 17.8775 kcal/mol@LB@Unfolding Energy - sRNA 21.2308 kcal/mol@LB@@LB@Position - mRNA 188 -- 243@LB@Position - sRNA 45 -- 102@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 94 -- 100@LB@ |
| 26 |
6.892e-05 |
0.01177 |
pa0375 |
ftsX |
-18.23 |
0.000891 |
153 -- 205 |
100 -- 144 |
cell division protein FtsX |
|
_____________152___________________________________________________206\n_____________|_____________________________________________________|\n5'-CUG...AUGCU_____U____C__G_____A___UCGCU________GGAUGA___________CGCCA...CGU-3'\n______________GACCC_GCAG_GU_GCCGG_UCA_____GACCGUGA______GGCCUGAUGAG\n______________|||||_|||:_||_|||||_|||_____:|||||||______:||||||||||\n______________CUGGG_CGUU_CA_CGGCC_AGU_____UUGGCACU______UCGGACUACUC\n____3'-UUUUUUU_____C____U________C___UU___________AA_______________CUCUA...GUU-5'\n_____________|_____________________________________________________|\n_____________145___________________________________________________99\n |
199 -- 205 |
100 -- 106 |
-59.0387 kcal/mol |
20.5976 kcal/mol |
20.2157 kcal/mol |
152 206@LB@ | |@LB@5'-CUG...AUGCU U C G A UCGCU GGAUGA CGCCA...CGU-3'@LB@ GACCC GCAG GU GCCGG UCA GACCGUGA GGCCUGAUGAG@LB@ ||||| |||: || ||||| ||| :||||||| :||||||||||@LB@ CUGGG CGUU CA CGGCC AGU UUGGCACU UCGGACUACUC@LB@ 3'-UUUUUUU C U C UU AA CUCUA...GUU-5'@LB@ | |@LB@ 145 99@LB@@LB@@LB@Energy -18.23 kcal/mol@LB@Hybridization Energy -59.0387 kcal/mol@LB@Unfolding Energy - mRNA 20.5976 kcal/mol@LB@Unfolding Energy - sRNA 20.2157 kcal/mol@LB@@LB@Position - mRNA 153 -- 205@LB@Position - sRNA 100 -- 144@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 100 -- 106@LB@ |
| 137 |
0.002719 |
0.09122 |
pa5476 |
citA |
-9.77 |
0.199491 |
137 -- 148 |
71 -- 82 |
citrate transporter |
pa0703 pa4343 |
_____________136__________149\n_____________|____________|\n5'-UCG...CGUAC___C________CCAUC...CCG-3'\n______________CCG_CUGCGUGG\n______________|||_||||||||\n______________GGC_GACGCACC\n3'-UUU...UCUCA___U________CAGAG...GUU-5'\n_____________|____________|\n_____________83___________70\n |
142 -- 148 |
71 -- 77 |
-20.5392 kcal/mol |
6.66778 kcal/mol |
4.10469 kcal/mol |
136 149@LB@ | |@LB@5'-UCG...CGUAC C CCAUC...CCG-3'@LB@ CCG CUGCGUGG@LB@ ||| ||||||||@LB@ GGC GACGCACC@LB@3'-UUU...UCUCA U CAGAG...GUU-5'@LB@ | |@LB@ 83 70@LB@@LB@@LB@Energy -9.77 kcal/mol@LB@Hybridization Energy -20.5392 kcal/mol@LB@Unfolding Energy - mRNA 6.66778 kcal/mol@LB@Unfolding Energy - sRNA 4.10469 kcal/mol@LB@@LB@Position - mRNA 137 -- 148@LB@Position - sRNA 71 -- 82@LB@Position Seed - mRNA 142 -- 148@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 125 |
0.002365 |
0.08694 |
pa4303 |
tadZ |
-11.60 |
0.080140 |
12 -- 30 |
101 -- 120 |
class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in (if known). |
|
_____________11___________________31\n_____________|____________________|\n5'-UGG...AGGAC_____C__GCU_________UCGUC...GCG-3'\n______________GACCG_GA___G_CUGAUGA\n______________:||||_||___|_|||||||\n______________UUGGC_CU___C_GACUACU\n3'-UUU...AGUUU_____A__AAU_G_______CCUCU...GUU-5'\n_____________|____________________|\n_____________121__________________100\n |
24 -- 30 |
101 -- 107 |
-18.3231 kcal/mol |
4.48403 kcal/mol |
2.2437 kcal/mol |
11 31@LB@ | |@LB@5'-UGG...AGGAC C GCU UCGUC...GCG-3'@LB@ GACCG GA G CUGAUGA@LB@ :|||| || | |||||||@LB@ UUGGC CU C GACUACU@LB@3'-UUU...AGUUU A AAU G CCUCU...GUU-5'@LB@ | |@LB@ 121 100@LB@@LB@@LB@Energy -11.60 kcal/mol@LB@Hybridization Energy -18.3231 kcal/mol@LB@Unfolding Energy - mRNA 4.48403 kcal/mol@LB@Unfolding Energy - sRNA 2.2437 kcal/mol@LB@@LB@Position - mRNA 12 -- 30@LB@Position - sRNA 101 -- 120@LB@Position Seed - mRNA 24 -- 30@LB@Position Seed - sRNA 101 -- 107@LB@ |
| 97 |
0.001341 |
0.06355 |
pa3929 |
cioB |
-12.35 |
0.052798 |
141 -- 190 |
33 -- 89 |
cyanide insensitive terminal oxidase |
|
_____________140____________________________________________________________191\n_____________|______________________________________________________________|\n5'-UCG...UCGAC______CA____G______________C__GCA_G____C______________GACAA___GAACU...UCU-3'\n______________GAAGAG__CGAC_GC__________CA_GC___A_CGGC_GA_C_CGCGACCAG_____GAG\n______________||||||__||||_||__________||_||___|_||||_||_|_|||||||||_____|||\n______________CUUCUC__GCUG_CG__________GU_CG___U_GCCG_CU_G_GCGCUGGUC_____CUC\n3'-UUU...UUAGA______AG____A__CACCCAGAGA_____AA__G____A__A_A_________AA______ACUGU...GUU-5'\n_____________|______________________________________________________________|\n_____________90_____________________________________________________________32\n |
176 -- 182 |
38 -- 44 |
-47.0211 kcal/mol |
15.6367 kcal/mol |
19.0341 kcal/mol |
140 191@LB@ | |@LB@5'-UCG...UCGAC CA G C GCA G C GACAA GAACU...UCU-3'@LB@ GAAGAG CGAC GC CA GC A CGGC GA C CGCGACCAG GAG@LB@ |||||| |||| || || || | |||| || | ||||||||| |||@LB@ CUUCUC GCUG CG GU CG U GCCG CU G GCGCUGGUC CUC@LB@3'-UUU...UUAGA AG A CACCCAGAGA AA G A A A AA ACUGU...GUU-5'@LB@ | |@LB@ 90 32@LB@@LB@@LB@Energy -12.35 kcal/mol@LB@Hybridization Energy -47.0211 kcal/mol@LB@Unfolding Energy - mRNA 15.6367 kcal/mol@LB@Unfolding Energy - sRNA 19.0341 kcal/mol@LB@@LB@Position - mRNA 141 -- 190@LB@Position - sRNA 33 -- 89@LB@Position Seed - mRNA 176 -- 182@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 3 |
1.464e-07 |
0.0002243 |
pa3814 |
iscS |
-11.38 |
0.090161 |
182 -- 237 |
39 -- 110 |
cysteine desulfurase |
|
_____________181___________________________________________________________________________238\n_____________|_____________________________________________________________________________|\n5'-CAC...GCGCC______U_______UUAC_____U__AAUUG________________AC____A_______________________CUCCC...UCG-3'\n______________AGCCUG___AGGAG_____CUGA_GA_____CCGA_________UCU__CUCG__UUAC_______UC_CGCGACCA\n______________||||||___|||||_____||||_||_____||||_________|||__|||:__||||_______||_||||||||\n______________UCGGAC___UCCUC_____GACU_CU_____GGCU_________AGA__GAGU__AAUG_______AG_GCGCUGGU\n3'-UUU...ACUAA______UAC_____UAUUA____U__CA_______GACGCACCC_________CG____GCCGACU__A________CAACU...GUU-5'\n_____________|_____________________________________________________________________________|\n_____________111___________________________________________________________________________38\n |
231 -- 237 |
39 -- 45 |
-44.4171 kcal/mol |
9.67698 kcal/mol |
23.3669 kcal/mol |
181 238@LB@ | |@LB@5'-CAC...GCGCC U UUAC U AAUUG AC A CUCCC...UCG-3'@LB@ AGCCUG AGGAG CUGA GA CCGA UCU CUCG UUAC UC CGCGACCA@LB@ |||||| ||||| |||| || |||| ||| |||: |||| || ||||||||@LB@ UCGGAC UCCUC GACU CU GGCU AGA GAGU AAUG AG GCGCUGGU@LB@3'-UUU...ACUAA UAC UAUUA U CA GACGCACCC CG GCCGACU A CAACU...GUU-5'@LB@ | |@LB@ 111 38@LB@@LB@@LB@Energy -11.38 kcal/mol@LB@Hybridization Energy -44.4171 kcal/mol@LB@Unfolding Energy - mRNA 9.67698 kcal/mol@LB@Unfolding Energy - sRNA 23.3669 kcal/mol@LB@@LB@Position - mRNA 182 -- 237@LB@Position - sRNA 39 -- 110@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 29 |
7.803e-05 |
0.01177 |
pa5491 |
N/A |
-19.34 |
0.000334 |
185 -- 216 |
75 -- 108 |
cytochrome |
|
_____________184_________________________________217\n_____________|___________________________________|\n5'-GGG...UUCCC___________C______A______AA________UCGCA...CGU-3'\n______________CCUGAUGAGGA___GAUC_UGAAGA__CUG_CUGC\n______________|||||||||||___:|||_||||||__|:|_||||\n______________GGACUACUCCU___UUAG_ACUUCU__GGC_GACG\n3'-UUU...UAAUC___________CUA___________CA___U____CACCC...GUU-5'\n_____________|___________________________________|\n_____________109_________________________________74\n |
189 -- 195 |
98 -- 104 |
-37.6738 kcal/mol |
6.8106 kcal/mol |
11.5256 kcal/mol |
184 217@LB@ | |@LB@5'-GGG...UUCCC C A AA UCGCA...CGU-3'@LB@ CCUGAUGAGGA GAUC UGAAGA CUG CUGC@LB@ ||||||||||| :||| |||||| |:| ||||@LB@ GGACUACUCCU UUAG ACUUCU GGC GACG@LB@3'-UUU...UAAUC CUA CA U CACCC...GUU-5'@LB@ | |@LB@ 109 74@LB@@LB@@LB@Energy -19.34 kcal/mol@LB@Hybridization Energy -37.6738 kcal/mol@LB@Unfolding Energy - mRNA 6.8106 kcal/mol@LB@Unfolding Energy - sRNA 11.5256 kcal/mol@LB@@LB@Position - mRNA 185 -- 216@LB@Position - sRNA 75 -- 108@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 98 -- 104@LB@ |
| 85 |
0.001072 |
0.05733 |
pa4430 |
N/A |
-13.41 |
0.028331 |
184 -- 204 |
101 -- 120 |
cytochrome b |
|
_____________183___________________205\n_____________|_____________________|\n5'-ACC...GCGUG____AG__GAA__________ACAAG...UCU-3'\n______________GACC__GA___AGCCUGAUGA\n______________:|||__||___||||||||||\n______________UUGG__CU___UCGGACUACU\n3'-UUU...AGUUU____CA__AA___________CCUCU...GUU-5'\n_____________|_____________________|\n_____________121___________________100\n |
198 -- 204 |
101 -- 107 |
-22.7142 kcal/mol |
7.05943 kcal/mol |
2.2437 kcal/mol |
183 205@LB@ | |@LB@5'-ACC...GCGUG AG GAA ACAAG...UCU-3'@LB@ GACC GA AGCCUGAUGA@LB@ :||| || ||||||||||@LB@ UUGG CU UCGGACUACU@LB@3'-UUU...AGUUU CA AA CCUCU...GUU-5'@LB@ | |@LB@ 121 100@LB@@LB@@LB@Energy -13.41 kcal/mol@LB@Hybridization Energy -22.7142 kcal/mol@LB@Unfolding Energy - mRNA 7.05943 kcal/mol@LB@Unfolding Energy - sRNA 2.2437 kcal/mol@LB@@LB@Position - mRNA 184 -- 204@LB@Position - sRNA 101 -- 120@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 101 -- 107@LB@ |
