| 190 |
0.005086 |
0.123 |
pa0591 |
N/A |
-15.37 |
0.007942 |
156 -- 173 |
100 -- 120 |
protein ApaG |
|
_____________155___________________174\n_____________|_____________________|\n5'-UCA...CAGGC_____________________ACACU...CGG-3'\n______________AAUCGU___UAGUCUGAUGAG\n______________||:|||___|||:||||||||\n______________UUGGCA___AUCGGACUACUC\n3'-UUU...AGUUU______CUA____________CUCUA...GUU-5'\n_____________|_____________________|\n_____________121___________________99\n |
167 -- 173 |
100 -- 106 |
-22.6098 kcal/mol |
4.99015 kcal/mol |
2.24919 kcal/mol |
155 174@LB@ | |@LB@5'-UCA...CAGGC ACACU...CGG-3'@LB@ AAUCGU UAGUCUGAUGAG@LB@ ||:||| |||:||||||||@LB@ UUGGCA AUCGGACUACUC@LB@3'-UUU...AGUUU CUA CUCUA...GUU-5'@LB@ | |@LB@ 121 99@LB@@LB@@LB@Energy -15.37 kcal/mol@LB@Hybridization Energy -22.6098 kcal/mol@LB@Unfolding Energy - mRNA 4.99015 kcal/mol@LB@Unfolding Energy - sRNA 2.24919 kcal/mol@LB@@LB@Position - mRNA 156 -- 173@LB@Position - sRNA 100 -- 120@LB@Position Seed - mRNA 167 -- 173@LB@Position Seed - sRNA 100 -- 106@LB@ |
| 169 |
0.004373 |
0.117 |
pa4102 |
bfmS |
-16.20 |
0.004411 |
15 -- 27 |
35 -- 47 |
protein BfmS |
|
_____________14____________28\n_____________|_____________|\n5'-CAA...CUCAG_____________CUCAA...CGC-3'\n______________UCGCGACCAGUUG\n______________|||||||||||||\n______________AGCGCUGGUCAAC\n3'-UUU...ACUAG_____________UCACU...GUU-5'\n_____________|_____________|\n_____________48____________34\n |
21 -- 27 |
35 -- 41 |
-23.806 kcal/mol |
3.92504 kcal/mol |
3.68501 kcal/mol |
14 28@LB@ | |@LB@5'-CAA...CUCAG CUCAA...CGC-3'@LB@ UCGCGACCAGUUG@LB@ |||||||||||||@LB@ AGCGCUGGUCAAC@LB@3'-UUU...ACUAG UCACU...GUU-5'@LB@ | |@LB@ 48 34@LB@@LB@@LB@Energy -16.20 kcal/mol@LB@Hybridization Energy -23.806 kcal/mol@LB@Unfolding Energy - mRNA 3.92504 kcal/mol@LB@Unfolding Energy - sRNA 3.68501 kcal/mol@LB@@LB@Position - mRNA 15 -- 27@LB@Position - sRNA 35 -- 47@LB@Position Seed - mRNA 21 -- 27@LB@Position Seed - sRNA 35 -- 41@LB@ |
| 75 |
0.0008154 |
0.04991 |
pa4367 |
bifA |
-16.44 |
0.003694 |
124 -- 142 |
99 -- 118 |
protein BifA |
|
_____________123__________________143\n_____________|____________________|\n5'-CGA...UUCGC_____________CU_____UAAAC...UCG-3'\n______________UCGUGAU_AGCCU__UGAGG\n______________:||||||_|||||__|||||\n______________GGCACUA_UCGGA__ACUCC\n3'-UUU...UUUUU_______A_____CU_____UCUAU...GUU-5'\n_____________|____________________|\n_____________119__________________98\n |
124 -- 130 |
112 -- 118 |
-25.0523 kcal/mol |
6.36496 kcal/mol |
2.24947 kcal/mol |
123 143@LB@ | |@LB@5'-CGA...UUCGC CU UAAAC...UCG-3'@LB@ UCGUGAU AGCCU UGAGG@LB@ :|||||| ||||| |||||@LB@ GGCACUA UCGGA ACUCC@LB@3'-UUU...UUUUU A CU UCUAU...GUU-5'@LB@ | |@LB@ 119 98@LB@@LB@@LB@Energy -16.44 kcal/mol@LB@Hybridization Energy -25.0523 kcal/mol@LB@Unfolding Energy - mRNA 6.36496 kcal/mol@LB@Unfolding Energy - sRNA 2.24947 kcal/mol@LB@@LB@Position - mRNA 124 -- 142@LB@Position - sRNA 99 -- 118@LB@Position Seed - mRNA 124 -- 130@LB@Position Seed - sRNA 112 -- 118@LB@ |
| 95 |
0.001333 |
0.06355 |
pa5380 |
gbdR |
-10.99 |
0.110367 |
154 -- 228 |
78 -- 123 |
protein GbdR |
|
_____________153_________________________________________________________________________229\n_____________|___________________________________________________________________________|\n5'-UGC...AUAAA_______UC____GA______CUUGCUCAGC___________CACCCA___CCACGUACGCGCCC_______C__CACAG...CGG-3'\n______________AAAAGCC__GUGA__GGCCUG__________GUGAGGAGAUA______UGA______________GGAGUCC_AC\n______________||||:||__||||__:|||||__________:||||||||||______|||______________:||||||_||\n______________UUUUUGG__CACU__UCGGAC__________UACUCCUCUAU______ACU______________UCUCAGG_UG\n3'-UUU...CCCAG_____________AA___________________________UAG___________________________C__ACGCA...GUU-5'\n_____________|___________________________________________________________________________|\n_____________124_________________________________________________________________________77\n |
219 -- 225 |
81 -- 87 |
-45.4439 kcal/mol |
22.3385 kcal/mol |
12.1238 kcal/mol |
153 229@LB@ | |@LB@5'-UGC...AUAAA UC GA CUUGCUCAGC CACCCA CCACGUACGCGCCC C CACAG...CGG-3'@LB@ AAAAGCC GUGA GGCCUG GUGAGGAGAUA UGA GGAGUCC AC@LB@ ||||:|| |||| :||||| :|||||||||| ||| :|||||| ||@LB@ UUUUUGG CACU UCGGAC UACUCCUCUAU ACU UCUCAGG UG@LB@3'-UUU...CCCAG AA UAG C ACGCA...GUU-5'@LB@ | |@LB@ 124 77@LB@@LB@@LB@Energy -10.99 kcal/mol@LB@Hybridization Energy -45.4439 kcal/mol@LB@Unfolding Energy - mRNA 22.3385 kcal/mol@LB@Unfolding Energy - sRNA 12.1238 kcal/mol@LB@@LB@Position - mRNA 154 -- 228@LB@Position - sRNA 78 -- 123@LB@Position Seed - mRNA 219 -- 225@LB@Position Seed - sRNA 81 -- 87@LB@ |
| 40 |
0.0001908 |
0.02192 |
pa5015 |
aceE |
-12.88 |
0.038887 |
273 -- 297 |
101 -- 123 |
pyruvate dehydrogenase subunit E1 |
|
_____________272________________________298\n_____________|__________________________|\n5'-CCU...AAGGU________C_CUC_____________CCC-3'\n______________GAAGACCG_G___AUUA_CCUGAUGA\n______________:||:||||_|___||||_||||||||\n______________UUUUUGGC_C___UAAU_GGACUACU\n3'-UUU...CCCAG________A________C________CCUCU...GUU-5'\n_____________|__________________________|\n_____________124________________________100\n |
291 -- 297 |
101 -- 107 |
-21.2393 kcal/mol |
6.11337 kcal/mol |
2.24445 kcal/mol |
272 298@LB@ | |@LB@5'-CCU...AAGGU C CUC CCC-3'@LB@ GAAGACCG G AUUA CCUGAUGA@LB@ :||:|||| | |||| ||||||||@LB@ UUUUUGGC C UAAU GGACUACU@LB@3'-UUU...CCCAG A C CCUCU...GUU-5'@LB@ | |@LB@ 124 100@LB@@LB@@LB@Energy -12.88 kcal/mol@LB@Hybridization Energy -21.2393 kcal/mol@LB@Unfolding Energy - mRNA 6.11337 kcal/mol@LB@Unfolding Energy - sRNA 2.24445 kcal/mol@LB@@LB@Position - mRNA 273 -- 297@LB@Position - sRNA 101 -- 123@LB@Position Seed - mRNA 291 -- 297@LB@Position Seed - sRNA 101 -- 107@LB@ |
| 163 |
0.004151 |
0.1159 |
pa3263 |
N/A |
-13.17 |
0.032863 |
133 -- 150 |
104 -- 121 |
recombination associated protein RdgC |
|
_____________132________________151\n_____________|__________________|\n5'-GUA...GCGAC______G___________GCCGC...CCU-3'\n______________GGACCG_GGUUGGCCUGA\n______________::||||_|:||:||||||\n______________UUUGGC_CUAAUCGGACU\n3'-UUU...CAGUU______A___________ACUCC...GUU-5'\n_____________|__________________|\n_____________122________________103\n |
144 -- 150 |
104 -- 110 |
-25.1519 kcal/mol |
9.74439 kcal/mol |
2.24203 kcal/mol |
132 151@LB@ | |@LB@5'-GUA...GCGAC G GCCGC...CCU-3'@LB@ GGACCG GGUUGGCCUGA@LB@ ::|||| |:||:||||||@LB@ UUUGGC CUAAUCGGACU@LB@3'-UUU...CAGUU A ACUCC...GUU-5'@LB@ | |@LB@ 122 103@LB@@LB@@LB@Energy -13.17 kcal/mol@LB@Hybridization Energy -25.1519 kcal/mol@LB@Unfolding Energy - mRNA 9.74439 kcal/mol@LB@Unfolding Energy - sRNA 2.24203 kcal/mol@LB@@LB@Position - mRNA 133 -- 150@LB@Position - sRNA 104 -- 121@LB@Position Seed - mRNA 144 -- 150@LB@Position Seed - sRNA 104 -- 110@LB@ |
| 180 |
0.004705 |
0.1199 |
pa3616 |
N/A |
-16.34 |
0.003989 |
120 -- 132 |
35 -- 47 |
recombination regulator RecX |
|
_____________119___________133\n_____________|_____________|\n5'-GUC...ACCAU_____________CUGGC...UGC-3'\n______________UCGCGACCAGUUG\n______________|||||||||||||\n______________AGCGCUGGUCAAC\n3'-UUU...ACUAG_____________UCACU...GUU-5'\n_____________|_____________|\n_____________48____________34\n |
126 -- 132 |
35 -- 41 |
-23.7921 kcal/mol |
3.77419 kcal/mol |
3.68501 kcal/mol |
119 133@LB@ | |@LB@5'-GUC...ACCAU CUGGC...UGC-3'@LB@ UCGCGACCAGUUG@LB@ |||||||||||||@LB@ AGCGCUGGUCAAC@LB@3'-UUU...ACUAG UCACU...GUU-5'@LB@ | |@LB@ 48 34@LB@@LB@@LB@Energy -16.34 kcal/mol@LB@Hybridization Energy -23.7921 kcal/mol@LB@Unfolding Energy - mRNA 3.77419 kcal/mol@LB@Unfolding Energy - sRNA 3.68501 kcal/mol@LB@@LB@Position - mRNA 120 -- 132@LB@Position - sRNA 35 -- 47@LB@Position Seed - mRNA 126 -- 132@LB@Position Seed - sRNA 35 -- 41@LB@ |
| 185 |
0.004884 |
0.1213 |
pa2528 |
N/A |
-11.72 |
0.074904 |
177 -- 197 |
98 -- 118 |
resistance-nodulation-cell division (RND) efflux membrane fusion protein |
|
_____________176___________________198\n_____________|_____________________|\n5'-CUU...CGCCU____UCUA_______A__A__ACCAU...UGG-3'\n______________CCGU____AGCCUGA_GA_GA\n______________||||____|||||||_||_||\n______________GGCA____UCGGACU_CU_CU\n3'-UUU...UUUUU____CUAA_______A__C__CUAUU...GUU-5'\n_____________|_____________________|\n_____________119___________________97\n |
185 -- 191 |
104 -- 110 |
-18.0515 kcal/mol |
4.07956 kcal/mol |
2.25139 kcal/mol |
176 198@LB@ | |@LB@5'-CUU...CGCCU UCUA A A ACCAU...UGG-3'@LB@ CCGU AGCCUGA GA GA@LB@ |||| ||||||| || ||@LB@ GGCA UCGGACU CU CU@LB@3'-UUU...UUUUU CUAA A C CUAUU...GUU-5'@LB@ | |@LB@ 119 97@LB@@LB@@LB@Energy -11.72 kcal/mol@LB@Hybridization Energy -18.0515 kcal/mol@LB@Unfolding Energy - mRNA 4.07956 kcal/mol@LB@Unfolding Energy - sRNA 2.25139 kcal/mol@LB@@LB@Position - mRNA 177 -- 197@LB@Position - sRNA 98 -- 118@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 104 -- 110@LB@ |
| 66 |
0.0006609 |
0.04603 |
pa1980 |
eraR |
-16.49 |
0.003558 |
189 -- 219 |
71 -- 102 |
response regulator EraR |
|
_____________188_______________________________220\n_____________|_________________________________|\n5'-GUG...ACUGA_______GGACGA__________U_________ACGAU...GCG-3'\n______________GAGGAGA______UGAAG_GUCC_GCUG_GUGG\n______________|||||||______|||||_||||_:|||_||||\n______________CUCCUCU______ACUUC_CAGG_UGAC_CACC\n3'-UUU...GACUA_______AUUAG______U____C____G____CAGAG...GUU-5'\n_____________|_________________________________|\n_____________103_______________________________70\n |
189 -- 195 |
96 -- 102 |
-37.796 kcal/mol |
12.0241 kcal/mol |
9.28371 kcal/mol |
188 220@LB@ | |@LB@5'-GUG...ACUGA GGACGA U ACGAU...GCG-3'@LB@ GAGGAGA UGAAG GUCC GCUG GUGG@LB@ ||||||| ||||| |||| :||| ||||@LB@ CUCCUCU ACUUC CAGG UGAC CACC@LB@3'-UUU...GACUA AUUAG U C G CAGAG...GUU-5'@LB@ | |@LB@ 103 70@LB@@LB@@LB@Energy -16.49 kcal/mol@LB@Hybridization Energy -37.796 kcal/mol@LB@Unfolding Energy - mRNA 12.0241 kcal/mol@LB@Unfolding Energy - sRNA 9.28371 kcal/mol@LB@@LB@Position - mRNA 189 -- 219@LB@Position - sRNA 71 -- 102@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 96 -- 102@LB@ |
| 86 |
0.001073 |
0.05733 |
pa0916 |
N/A |
-12.39 |
0.051807 |
188 -- 200 |
107 -- 119 |
ribosomal protein S12 methylthiotransferase RimO |
|
_____________187___________201\n_____________|_____________|\n5'-GUC...CGCCU____A________AUGUC...GCU-3'\n______________ACCG_GGUUAGCC\n______________||||_|:||||||\n______________UGGC_CUAAUCGG\n3'-UUU...GUUUU____A________ACUAC...GUU-5'\n_____________|_____________|\n_____________120___________106\n |
194 -- 200 |
107 -- 113 |
-18.1643 kcal/mol |
3.54951 kcal/mol |
2.23484 kcal/mol |
187 201@LB@ | |@LB@5'-GUC...CGCCU A AUGUC...GCU-3'@LB@ ACCG GGUUAGCC@LB@ |||| |:||||||@LB@ UGGC CUAAUCGG@LB@3'-UUU...GUUUU A ACUAC...GUU-5'@LB@ | |@LB@ 120 106@LB@@LB@@LB@Energy -12.39 kcal/mol@LB@Hybridization Energy -18.1643 kcal/mol@LB@Unfolding Energy - mRNA 3.54951 kcal/mol@LB@Unfolding Energy - sRNA 2.23484 kcal/mol@LB@@LB@Position - mRNA 188 -- 200@LB@Position - sRNA 107 -- 119@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 107 -- 113@LB@ |
