| 106 |
0.001743 |
0.07531 |
pa4019 |
N/A |
-13.63 |
0.024857 |
269 -- 289 |
98 -- 119 |
aromatic acid decarboxylase |
|
_____________268_____________________290\n_____________|_______________________|\n5'-CCG...CGCUU___C______________C____AGAGC...AGG-3'\n______________GCU__GAUU_GCCUGGUG_AGGA\n______________:|:__||||_|||||:||_||||\n______________UGG__CUAA_CGGACUAC_UCCU\n3'-UUU...GUUUU___CA____U_____________CUAUU...GUU-5'\n_____________|_______________________|\n_____________120_____________________97\n |
278 -- 284 |
102 -- 108 |
-22.0172 kcal/mol |
6.14115 kcal/mol |
2.25153 kcal/mol |
268 290@LB@ | |@LB@5'-CCG...CGCUU C C AGAGC...AGG-3'@LB@ GCU GAUU GCCUGGUG AGGA@LB@ :|: |||| |||||:|| ||||@LB@ UGG CUAA CGGACUAC UCCU@LB@3'-UUU...GUUUU CA U CUAUU...GUU-5'@LB@ | |@LB@ 120 97@LB@@LB@@LB@Energy -13.63 kcal/mol@LB@Hybridization Energy -22.0172 kcal/mol@LB@Unfolding Energy - mRNA 6.14115 kcal/mol@LB@Unfolding Energy - sRNA 2.25153 kcal/mol@LB@@LB@Position - mRNA 269 -- 289@LB@Position - sRNA 98 -- 119@LB@Position Seed - mRNA 278 -- 284@LB@Position Seed - sRNA 102 -- 108@LB@ |
| 142 |
0.003054 |
0.09883 |
pa4939 |
N/A |
-10.79 |
0.122172 |
84 -- 99 |
39 -- 58 |
ATP phosphoribosyltransferase |
|
_____________83___________________100\n_____________|____________________|\n5'-CGC...CAUCG____________________UCACC...AUC-3'\n______________GCCGGCUGA____GCGACCG\n______________:||||||||____||||||:\n______________UGGCCGACU____CGCUGGU\n3'-UUU...UCGAA_________AGAG_______CAACU...GUU-5'\n_____________|____________________|\n_____________59___________________38\n |
93 -- 99 |
39 -- 45 |
-28.5021 kcal/mol |
6.65531 kcal/mol |
11.0618 kcal/mol |
83 100@LB@ | |@LB@5'-CGC...CAUCG UCACC...AUC-3'@LB@ GCCGGCUGA GCGACCG@LB@ :|||||||| ||||||:@LB@ UGGCCGACU CGCUGGU@LB@3'-UUU...UCGAA AGAG CAACU...GUU-5'@LB@ | |@LB@ 59 38@LB@@LB@@LB@Energy -10.79 kcal/mol@LB@Hybridization Energy -28.5021 kcal/mol@LB@Unfolding Energy - mRNA 6.65531 kcal/mol@LB@Unfolding Energy - sRNA 11.0618 kcal/mol@LB@@LB@Position - mRNA 84 -- 99@LB@Position - sRNA 39 -- 58@LB@Position Seed - mRNA 93 -- 99@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 150 |
0.003458 |
0.106 |
pa5558 |
atpF |
-11.25 |
0.096505 |
215 -- 228 |
107 -- 120 |
ATP synthase subunit B |
|
_____________214____________229\n_____________|______________|\n5'-CUC...AAUGC____C_________AGUCC...UGC-3'\n______________AACC_UGAUUGGCC\n______________||||_|||||:|||\n______________UUGG_ACUAAUCGG\n3'-UUU...AGUUU____C_________ACUAC...GUU-5'\n_____________|______________|\n_____________121____________106\n |
222 -- 228 |
107 -- 113 |
-18.4292 kcal/mol |
4.95427 kcal/mol |
2.2351 kcal/mol |
214 229@LB@ | |@LB@5'-CUC...AAUGC C AGUCC...UGC-3'@LB@ AACC UGAUUGGCC@LB@ |||| |||||:|||@LB@ UUGG ACUAAUCGG@LB@3'-UUU...AGUUU C ACUAC...GUU-5'@LB@ | |@LB@ 121 106@LB@@LB@@LB@Energy -11.25 kcal/mol@LB@Hybridization Energy -18.4292 kcal/mol@LB@Unfolding Energy - mRNA 4.95427 kcal/mol@LB@Unfolding Energy - sRNA 2.2351 kcal/mol@LB@@LB@Position - mRNA 215 -- 228@LB@Position - sRNA 107 -- 120@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 107 -- 113@LB@ |
| 25 |
6.377e-05 |
0.01172 |
pa4235 |
bfrA |
-17.70 |
0.001383 |
58 -- 83 |
99 -- 122 |
bacterioferritin |
|
_____________57__________________________84\n_____________|___________________________|\n5'-CCU...GGCCU_______GAC_________________CCCCC...AGG-3'\n______________GAAGCUG___UGA_UGGCCUGAUGAGG\n______________:||:|:|___|||_|:|||||||||||\n______________UUUUGGC___ACU_AUCGGACUACUCC\n3'-UUU...CCAGU_____________A_____________UCUAU...GUU-5'\n_____________|___________________________|\n_____________123_________________________98\n |
77 -- 83 |
99 -- 105 |
-30.6433 kcal/mol |
10.6928 kcal/mol |
2.25034 kcal/mol |
57 84@LB@ | |@LB@5'-CCU...GGCCU GAC CCCCC...AGG-3'@LB@ GAAGCUG UGA UGGCCUGAUGAGG@LB@ :||:|:| ||| |:|||||||||||@LB@ UUUUGGC ACU AUCGGACUACUCC@LB@3'-UUU...CCAGU A UCUAU...GUU-5'@LB@ | |@LB@ 123 98@LB@@LB@@LB@Energy -17.70 kcal/mol@LB@Hybridization Energy -30.6433 kcal/mol@LB@Unfolding Energy - mRNA 10.6928 kcal/mol@LB@Unfolding Energy - sRNA 2.25034 kcal/mol@LB@@LB@Position - mRNA 58 -- 83@LB@Position - sRNA 99 -- 122@LB@Position Seed - mRNA 77 -- 83@LB@Position Seed - sRNA 99 -- 105@LB@ |
| 37 |
0.0001556 |
0.01933 |
pa4880 |
N/A |
-12.85 |
0.039617 |
174 -- 244 |
39 -- 119 |
bacterioferritin |
|
_____________173_____________________________________________________________________________________245\n_____________|_______________________________________________________________________________________|\n5'-CGC...UUUUC________C_____CA________A____C__U__CCACC____A____A__GAC________________________________UGCCC...GCC-3'\n______________ACCG_GAU_AGCCU____AGGAGA_AA_C_GA_GA_____GUUC_ACUG_CG___GUC___CAG___ACC__CU____UCGCGACCG\n______________||||_|||_|||||____||||||_||_|_||_||_____||:|_||||_||___|||___|||___|||__||____||||||||:\n______________UGGC_CUA_UCGGA____UCCUCU_UU_G_CU_CU_____CAGG_UGAC_GC___CAG___GUC___UGG__GA____AGCGCUGGU\n3'-UUU...GUUUU____A___A_____CUAC______A__A_A__U___________C_______ACC___AGA___GAA___CC__CUAG_________CAACU...GUU-5'\n_____________|_______________________________________________________________________________________|\n_____________120_____________________________________________________________________________________38\n |
238 -- 244 |
39 -- 45 |
-53.1463 kcal/mol |
16.8944 kcal/mol |
23.4063 kcal/mol |
173 245@LB@ | |@LB@5'-CGC...UUUUC C CA A C U CCACC A A GAC UGCCC...GCC-3'@LB@ ACCG GAU AGCCU AGGAGA AA C GA GA GUUC ACUG CG GUC CAG ACC CU UCGCGACCG@LB@ |||| ||| ||||| |||||| || | || || ||:| |||| || ||| ||| ||| || ||||||||:@LB@ UGGC CUA UCGGA UCCUCU UU G CU CU CAGG UGAC GC CAG GUC UGG GA AGCGCUGGU@LB@3'-UUU...GUUUU A A CUAC A A A U C ACC AGA GAA CC CUAG CAACU...GUU-5'@LB@ | |@LB@ 120 38@LB@@LB@@LB@Energy -12.85 kcal/mol@LB@Hybridization Energy -53.1463 kcal/mol@LB@Unfolding Energy - mRNA 16.8944 kcal/mol@LB@Unfolding Energy - sRNA 23.4063 kcal/mol@LB@@LB@Position - mRNA 174 -- 244@LB@Position - sRNA 39 -- 119@LB@Position Seed - mRNA 238 -- 244@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 183 |
0.004788 |
0.1199 |
pa0638 |
N/A |
-13.00 |
0.036234 |
1 -- 21 |
40 -- 62 |
bacteriophage protein |
|
______________1______________________22\n______________|______________________|\n___________5'-__G____________________GAUCG...UCC-3'\n______________GC_UACCGGC_GAUCUCGCG_CU\n______________||_|||||||_|||||||||_|:\n______________CG_AUGGCCG_CUAGAGCGC_GG\n3'-UUU...AGAGU__A_______A_________U__UCAAC...GUU-5'\n_____________|_______________________|\n_____________63______________________39\n |
13 -- 19 |
43 -- 49 |
-33.0928 kcal/mol |
8.24856 kcal/mol |
11.8411 kcal/mol |
1 22@LB@ | |@LB@ 5'- G GAUCG...UCC-3'@LB@ GC UACCGGC GAUCUCGCG CU@LB@ || ||||||| ||||||||| |:@LB@ CG AUGGCCG CUAGAGCGC GG@LB@3'-UUU...AGAGU A A U UCAAC...GUU-5'@LB@ | |@LB@ 63 39@LB@@LB@@LB@Energy -13.00 kcal/mol@LB@Hybridization Energy -33.0928 kcal/mol@LB@Unfolding Energy - mRNA 8.24856 kcal/mol@LB@Unfolding Energy - sRNA 11.8411 kcal/mol@LB@@LB@Position - mRNA 1 -- 21@LB@Position - sRNA 40 -- 62@LB@Position Seed - mRNA 13 -- 19@LB@Position Seed - sRNA 43 -- 49@LB@ |
| 153 |
0.003576 |
0.1073 |
pa5013 |
ilvE |
-11.20 |
0.098760 |
213 -- 229 |
103 -- 120 |
branched-chain amino acid aminotransferase |
|
_____________212________________230\n_____________|__________________|\n5'-UCU...UGGCC_____________G____CUGGU...AUG-3'\n______________GAUCGUGAU_GGC_UGAU\n______________:|:||||||_:||_||||\n______________UUGGCACUA_UCG_ACUA\n3'-UUU...AGUUU_________A___G____CUCCU...GUU-5'\n_____________|__________________|\n_____________121________________102\n |
215 -- 221 |
112 -- 118 |
-19.7956 kcal/mol |
6.35284 kcal/mol |
2.24268 kcal/mol |
212 230@LB@ | |@LB@5'-UCU...UGGCC G CUGGU...AUG-3'@LB@ GAUCGUGAU GGC UGAU@LB@ :|:|||||| :|| ||||@LB@ UUGGCACUA UCG ACUA@LB@3'-UUU...AGUUU A G CUCCU...GUU-5'@LB@ | |@LB@ 121 102@LB@@LB@@LB@Energy -11.20 kcal/mol@LB@Hybridization Energy -19.7956 kcal/mol@LB@Unfolding Energy - mRNA 6.35284 kcal/mol@LB@Unfolding Energy - sRNA 2.24268 kcal/mol@LB@@LB@Position - mRNA 213 -- 229@LB@Position - sRNA 103 -- 120@LB@Position Seed - mRNA 215 -- 221@LB@Position Seed - sRNA 112 -- 118@LB@ |
| 9 |
1.098e-05 |
0.004211 |
pa0119 |
N/A |
-18.72 |
0.000584 |
256 -- 296 |
78 -- 118 |
C4-dicarboxylate transporter DctA |
pa5479 pa1183 |
_____________255________________________________________297\n_____________|__________________________________________|\n5'-GCC...GCAAG__________________UA__C________C__________AUUC-3'\n______________UCGUGAUUGGCCUGGUGA__GG_GUGAUCUG_GGGGU_CGGC\n______________:|||||||:|||||:|||__:|_:|:|||||_:|:||_||:|\n______________GGCACUAAUCGGACUACU__UC_UAUUAGAC_UCUCA_GCUG\n3'-UUU...UUUUU__________________CC___________U_____G____ACGCA...GUU-5'\n_____________|__________________________________________|\n_____________119________________________________________77\n |
267 -- 273 |
101 -- 107 |
-51.6638 kcal/mol |
20.8263 kcal/mol |
12.1236 kcal/mol |
255 297@LB@ | |@LB@5'-GCC...GCAAG UA C C AUUC-3'@LB@ UCGUGAUUGGCCUGGUGA GG GUGAUCUG GGGGU CGGC@LB@ :|||||||:|||||:||| :| :|:||||| :|:|| ||:|@LB@ GGCACUAAUCGGACUACU UC UAUUAGAC UCUCA GCUG@LB@3'-UUU...UUUUU CC U G ACGCA...GUU-5'@LB@ | |@LB@ 119 77@LB@@LB@@LB@Energy -18.72 kcal/mol@LB@Hybridization Energy -51.6638 kcal/mol@LB@Unfolding Energy - mRNA 20.8263 kcal/mol@LB@Unfolding Energy - sRNA 12.1236 kcal/mol@LB@@LB@Position - mRNA 256 -- 296@LB@Position - sRNA 78 -- 118@LB@Position Seed - mRNA 267 -- 273@LB@Position Seed - sRNA 101 -- 107@LB@ |
| 174 |
0.00444 |
0.1171 |
pa4756 |
carB |
-14.46 |
0.014655 |
252 -- 264 |
107 -- 119 |
carbamoyl phosphate synthase large subunit |
|
_____________251___________265\n_____________|_____________|\n5'-GGU...GCCCC_____________AGGCC...CCU-3'\n______________AUCGUGAUUGGCC\n______________|:|||||||:|||\n______________UGGCACUAAUCGG\n3'-UUU...GUUUU_____________ACUAC...GUU-5'\n_____________|_____________|\n_____________120___________106\n |
258 -- 264 |
107 -- 113 |
-20.5807 kcal/mol |
3.88907 kcal/mol |
2.23484 kcal/mol |
251 265@LB@ | |@LB@5'-GGU...GCCCC AGGCC...CCU-3'@LB@ AUCGUGAUUGGCC@LB@ |:|||||||:|||@LB@ UGGCACUAAUCGG@LB@3'-UUU...GUUUU ACUAC...GUU-5'@LB@ | |@LB@ 120 106@LB@@LB@@LB@Energy -14.46 kcal/mol@LB@Hybridization Energy -20.5807 kcal/mol@LB@Unfolding Energy - mRNA 3.88907 kcal/mol@LB@Unfolding Energy - sRNA 2.23484 kcal/mol@LB@@LB@Position - mRNA 252 -- 264@LB@Position - sRNA 107 -- 119@LB@Position Seed - mRNA 258 -- 264@LB@Position Seed - sRNA 107 -- 113@LB@ |
| 36 |
0.0001485 |
0.01896 |
pa2147 |
katE |
-15.32 |
0.008256 |
177 -- 207 |
74 -- 109 |
catalase HPII |
|
_____________176_____________________________________208\n_____________|_______________________________________|\n5'-CGU...UUCAU___CAG_____________________AA_____GA___AGCAG...AUC-3'\n______________GCC___GAUGAGGAGA________GGA__CCGAU__GCG\n______________|||___||||||||||________:||__||||:__|||\n______________CGG___CUACUCCUCU________UCU__GGCUG__CGC\n3'-UUU...CUAAU___A____________AUUAGACU___CA_____A____ACCCA...GUU-5'\n_____________|_______________________________________|\n_____________110_____________________________________73\n |
186 -- 192 |
96 -- 102 |
-32.3599 kcal/mol |
5.50185 kcal/mol |
11.5406 kcal/mol |
176 208@LB@ | |@LB@5'-CGU...UUCAU CAG AA GA AGCAG...AUC-3'@LB@ GCC GAUGAGGAGA GGA CCGAU GCG@LB@ ||| |||||||||| :|| ||||: |||@LB@ CGG CUACUCCUCU UCU GGCUG CGC@LB@3'-UUU...CUAAU A AUUAGACU CA A ACCCA...GUU-5'@LB@ | |@LB@ 110 73@LB@@LB@@LB@Energy -15.32 kcal/mol@LB@Hybridization Energy -32.3599 kcal/mol@LB@Unfolding Energy - mRNA 5.50185 kcal/mol@LB@Unfolding Energy - sRNA 11.5406 kcal/mol@LB@@LB@Position - mRNA 177 -- 207@LB@Position - sRNA 74 -- 109@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 96 -- 102@LB@ |
