| 12 |
1.22e-05 |
0.004211 |
pa3312 |
N/A |
-10.60 |
0.134070 |
231 -- 250 |
100 -- 119 |
3-hydroxyisobutyrate dehydrogenase |
|
_____________230__________________251\n_____________|____________________|\n5'-CGG...CCUUC____GUCUC___________CGUGC...UGU-3'\n______________GCCG_____GGCCUGAUGGG\n______________:|||_____:||||||||:|\n______________UGGC_____UCGGACUACUC\n3'-UUU...GUUUU____ACUAA___________CUCUA...GUU-5'\n_____________|____________________|\n_____________120__________________99\n |
244 -- 250 |
100 -- 106 |
-24.2186 kcal/mol |
11.3713 kcal/mol |
2.24903 kcal/mol |
230 251@LB@ | |@LB@5'-CGG...CCUUC GUCUC CGUGC...UGU-3'@LB@ GCCG GGCCUGAUGGG@LB@ :||| :||||||||:|@LB@ UGGC UCGGACUACUC@LB@3'-UUU...GUUUU ACUAA CUCUA...GUU-5'@LB@ | |@LB@ 120 99@LB@@LB@@LB@Energy -10.60 kcal/mol@LB@Hybridization Energy -24.2186 kcal/mol@LB@Unfolding Energy - mRNA 11.3713 kcal/mol@LB@Unfolding Energy - sRNA 2.24903 kcal/mol@LB@@LB@Position - mRNA 231 -- 250@LB@Position - sRNA 100 -- 119@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 100 -- 106@LB@ |
| 84 |
0.001042 |
0.05699 |
pa3121 |
leuC |
-8.58 |
0.330521 |
182 -- 193 |
98 -- 110 |
3-isopropylmalate dehydratase large subunit |
|
_____________181___________194\n_____________|_____________|\n5'-GCA...AAAUG_____________AAUCC...UGC-3'\n______________AG_CUGAUGAGGA\n______________||_||||||||||\n______________UC_GACUACUCCU\n3'-UUU...ACUAA__G__________CUAUU...GUU-5'\n_____________|_____________|\n_____________111___________97\n |
187 -- 193 |
98 -- 104 |
-17.6185 kcal/mol |
6.87469 kcal/mol |
2.16105 kcal/mol |
181 194@LB@ | |@LB@5'-GCA...AAAUG AAUCC...UGC-3'@LB@ AG CUGAUGAGGA@LB@ || ||||||||||@LB@ UC GACUACUCCU@LB@3'-UUU...ACUAA G CUAUU...GUU-5'@LB@ | |@LB@ 111 97@LB@@LB@@LB@Energy -8.58 kcal/mol@LB@Hybridization Energy -17.6185 kcal/mol@LB@Unfolding Energy - mRNA 6.87469 kcal/mol@LB@Unfolding Energy - sRNA 2.16105 kcal/mol@LB@@LB@Position - mRNA 182 -- 193@LB@Position - sRNA 98 -- 110@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 98 -- 104@LB@ |
| 23 |
5.711e-05 |
0.01105 |
pa2967 |
fabG |
-15.49 |
0.007349 |
171 -- 236 |
53 -- 111 |
3-oxoacyl-[acyl-carrier-protein] reductase FabG |
|
_____________170__________________________________________________________________237\n_____________|____________________________________________________________________|\n5'-CCC...CGCCC________GAGAGAGAA______G____CCAU_________AAG__AA____GCA_____A_______GCCAG...UCG-3'\n______________UGGCCUGA_________AGGAGA_AAUC____GAGUCUG_C___GU__GGUC___UUGGU__ACCGGC\n______________|:||||||_________||||||_||||____|||||:|_|___||__||||___|::|:__||||||\n______________AUCGGACU_________UCCUCU_UUAG____CUCAGGC_G___CA__CCAG___AGUCG__UGGCCG\n3'-UUU...CACUA________AC_____________A____ACUU_______U_ACG__C_____AG______AA______ACUAG...GUU-5'\n_____________|____________________________________________________________________|\n_____________112__________________________________________________________________52\n |
203 -- 209 |
80 -- 86 |
-53.5207 kcal/mol |
19.3634 kcal/mol |
18.6748 kcal/mol |
170 237@LB@ | |@LB@5'-CCC...CGCCC GAGAGAGAA G CCAU AAG AA GCA A GCCAG...UCG-3'@LB@ UGGCCUGA AGGAGA AAUC GAGUCUG C GU GGUC UUGGU ACCGGC@LB@ |:|||||| |||||| |||| |||||:| | || |||| |::|: ||||||@LB@ AUCGGACU UCCUCU UUAG CUCAGGC G CA CCAG AGUCG UGGCCG@LB@3'-UUU...CACUA AC A ACUU U ACG C AG AA ACUAG...GUU-5'@LB@ | |@LB@ 112 52@LB@@LB@@LB@Energy -15.49 kcal/mol@LB@Hybridization Energy -53.5207 kcal/mol@LB@Unfolding Energy - mRNA 19.3634 kcal/mol@LB@Unfolding Energy - sRNA 18.6748 kcal/mol@LB@@LB@Position - mRNA 171 -- 236@LB@Position - sRNA 53 -- 111@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 80 -- 86@LB@ |
| 78 |
0.000864 |
0.05078 |
pa4263 |
rplC |
-13.85 |
0.021626 |
50 -- 71 |
101 -- 122 |
50S ribosomal protein L3 |
|
_____________49_______________________72\n_____________|________________________|\n5'-CGA...CGGAU________C_______G_______AGCUC...AUC-3'\n______________AAAACCGU_GAU__GC_CUGAUGA\n______________||||||||_|||__||_|||||||\n______________UUUUGGCA_CUA__CG_GACUACU\n3'-UUU...CCAGU____________AU__________CCUCU...GUU-5'\n_____________|________________________|\n_____________123______________________100\n |
65 -- 71 |
101 -- 107 |
-22.5702 kcal/mol |
6.47727 kcal/mol |
2.24427 kcal/mol |
49 72@LB@ | |@LB@5'-CGA...CGGAU C G AGCUC...AUC-3'@LB@ AAAACCGU GAU GC CUGAUGA@LB@ |||||||| ||| || |||||||@LB@ UUUUGGCA CUA CG GACUACU@LB@3'-UUU...CCAGU AU CCUCU...GUU-5'@LB@ | |@LB@ 123 100@LB@@LB@@LB@Energy -13.85 kcal/mol@LB@Hybridization Energy -22.5702 kcal/mol@LB@Unfolding Energy - mRNA 6.47727 kcal/mol@LB@Unfolding Energy - sRNA 2.24427 kcal/mol@LB@@LB@Position - mRNA 50 -- 71@LB@Position - sRNA 101 -- 122@LB@Position Seed - mRNA 65 -- 71@LB@Position Seed - sRNA 101 -- 107@LB@ |
| 119 |
0.002082 |
0.07999 |
pa4053 |
ribE |
-9.84 |
0.193218 |
284 -- 298 |
103 -- 117 |
6 7-dimethyl-8-ribityllumazine synthase |
|
_____________283_____________299\n_____________|_______________|\n5'-UGC...UUCGU_____AA________CA-3'\n______________CGUGG__AGCCUGGU\n______________||||:__||||||:|\n______________GCACU__UCGGACUA\n3'-UUU...UUUUG_____AA________CUCCU...GUU-5'\n_____________|_______________|\n_____________118_____________102\n |
292 -- 298 |
103 -- 109 |
-17.5695 kcal/mol |
5.50648 kcal/mol |
2.23013 kcal/mol |
283 299@LB@ | |@LB@5'-UGC...UUCGU AA CA-3'@LB@ CGUGG AGCCUGGU@LB@ ||||: ||||||:|@LB@ GCACU UCGGACUA@LB@3'-UUU...UUUUG AA CUCCU...GUU-5'@LB@ | |@LB@ 118 102@LB@@LB@@LB@Energy -9.84 kcal/mol@LB@Hybridization Energy -17.5695 kcal/mol@LB@Unfolding Energy - mRNA 5.50648 kcal/mol@LB@Unfolding Energy - sRNA 2.23013 kcal/mol@LB@@LB@Position - mRNA 284 -- 298@LB@Position - sRNA 103 -- 117@LB@Position Seed - mRNA 292 -- 298@LB@Position Seed - sRNA 103 -- 109@LB@ |
| 186 |
0.004909 |
0.1213 |
pa3889 |
N/A |
-13.61 |
0.025105 |
195 -- 204 |
101 -- 110 |
ABC transporter |
|
_____________194________205\n_____________|__________|\n5'-GUC...AAGGA__________ACCGA...UCA-3'\n______________GGCCUGAUGA\n______________:|||||||||\n______________UCGGACUACU\n3'-UUU...ACUAA__________CCUCU...GUU-5'\n_____________|__________|\n_____________111________100\n |
198 -- 204 |
101 -- 107 |
-17.7978 kcal/mol |
2.07405 kcal/mol |
2.11196 kcal/mol |
194 205@LB@ | |@LB@5'-GUC...AAGGA ACCGA...UCA-3'@LB@ GGCCUGAUGA@LB@ :|||||||||@LB@ UCGGACUACU@LB@3'-UUU...ACUAA CCUCU...GUU-5'@LB@ | |@LB@ 111 100@LB@@LB@@LB@Energy -13.61 kcal/mol@LB@Hybridization Energy -17.7978 kcal/mol@LB@Unfolding Energy - mRNA 2.07405 kcal/mol@LB@Unfolding Energy - sRNA 2.11196 kcal/mol@LB@@LB@Position - mRNA 195 -- 204@LB@Position - sRNA 101 -- 110@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 101 -- 107@LB@ |
| 65 |
0.0006555 |
0.04603 |
pa0184 |
N/A |
-11.46 |
0.086208 |
64 -- 73 |
101 -- 110 |
ABC transporter ATP-binding protein |
pa2294 |
_____________63_________74\n_____________|__________|\n5'-AUC...UCGGC__________UCGGC...UCC-3'\n______________AGCCUGAUGA\n______________||||||||||\n______________UCGGACUACU\n3'-UUU...ACUAA__________CCUCU...GUU-5'\n_____________|__________|\n_____________111________100\n |
67 -- 73 |
101 -- 107 |
-16.8516 kcal/mol |
3.27707 kcal/mol |
2.11196 kcal/mol |
63 74@LB@ | |@LB@5'-AUC...UCGGC UCGGC...UCC-3'@LB@ AGCCUGAUGA@LB@ ||||||||||@LB@ UCGGACUACU@LB@3'-UUU...ACUAA CCUCU...GUU-5'@LB@ | |@LB@ 111 100@LB@@LB@@LB@Energy -11.46 kcal/mol@LB@Hybridization Energy -16.8516 kcal/mol@LB@Unfolding Energy - mRNA 3.27707 kcal/mol@LB@Unfolding Energy - sRNA 2.11196 kcal/mol@LB@@LB@Position - mRNA 64 -- 73@LB@Position - sRNA 101 -- 110@LB@Position Seed - mRNA 67 -- 73@LB@Position Seed - sRNA 101 -- 107@LB@ |
| 90 |
0.001223 |
0.06177 |
pa1071 |
braF |
-14.34 |
0.015804 |
45 -- 124 |
40 -- 117 |
ABC transporter ATP-binding protein |
|
_____________44______________________________________________________________________________________125\n_____________|_______________________________________________________________________________________|\n5'-AUC...CUCGG______ACUC___GCG__U__U______G___C_______AG__AA____C_____CAAC__AA_____CAU_______________UGACC...UGG-3'\n______________CGUGAU____GCC____G_GG_GAUGGU_CUG_____UCC__GA__UGCG_GGGUU_____G__UACCG___GCUGAUCUU_CGGCC\n______________||||||____|||____|_||_|||::|_|||_____|||__||__||||_||||:_____|__|||||___||||||||:_||:||\n______________GCACUA____CGG____C_CC_CUAUUA_GAC_____AGG__CU__ACGC_CCCAG_____C__AUGGC___CGACUAGAG_GCUGG\n3'-UUU...UUUUG______AU_____ACUA_U__U__________UUCUC_______G_____A_____AGAGU_GA_________________C_____UCAAC...GUU-5'\n_____________|_______________________________________________________________________________________|\n_____________118_____________________________________________________________________________________39\n |
112 -- 118 |
47 -- 53 |
-64.1742 kcal/mol |
26.441 kcal/mol |
23.3958 kcal/mol |
44 125@LB@ | |@LB@5'-AUC...CUCGG ACUC GCG U U G C AG AA C CAAC AA CAU UGACC...UGG-3'@LB@ CGUGAU GCC G GG GAUGGU CUG UCC GA UGCG GGGUU G UACCG GCUGAUCUU CGGCC@LB@ |||||| ||| | || |||::| ||| ||| || |||| ||||: | ||||| ||||||||: ||:||@LB@ GCACUA CGG C CC CUAUUA GAC AGG CU ACGC CCCAG C AUGGC CGACUAGAG GCUGG@LB@3'-UUU...UUUUG AU ACUA U U UUCUC G A AGAGU GA C UCAAC...GUU-5'@LB@ | |@LB@ 118 39@LB@@LB@@LB@Energy -14.34 kcal/mol@LB@Hybridization Energy -64.1742 kcal/mol@LB@Unfolding Energy - mRNA 26.441 kcal/mol@LB@Unfolding Energy - sRNA 23.3958 kcal/mol@LB@@LB@Position - mRNA 45 -- 124@LB@Position - sRNA 40 -- 117@LB@Position Seed - mRNA 112 -- 118@LB@Position Seed - sRNA 47 -- 53@LB@ |
| 41 |
0.000201 |
0.02253 |
pa1808 |
N/A |
-10.12 |
0.169236 |
14 -- 78 |
39 -- 99 |
ABC transporter permease |
|
_____________13__________________________________________________________________79\n_____________|___________________________________________________________________|\n5'-UUC...UGAUC__________UCUCCC______G__CUC__C__G________CGA_G____GA___A__________CCCGG...GCA-3'\n______________GAGGUGAUCU_______UCGAC_GC___GG_CU_CUCAGCUU___A_CGGC__UGA_C_CGCGACUA\n______________|||:|:||||_______:||||_||___||_||_||||||||___|_||||__|||_|_||||||:|\n______________CUCUAUUAGA_______GGCUG_CG___CC_GA_GAGUCGAA___U_GCCG__ACU_G_GCGCUGGU\n3'-UUU...UACUC__________CUUCUCA_____A__CAC__A_______________G_________A_A________CAACU...GUU-5'\n_____________|___________________________________________________________________|\n_____________100_________________________________________________________________38\n |
72 -- 78 |
39 -- 45 |
-56.2583 kcal/mol |
23.9789 kcal/mol |
22.1648 kcal/mol |
13 79@LB@ | |@LB@5'-UUC...UGAUC UCUCCC G CUC C G CGA G GA A CCCGG...GCA-3'@LB@ GAGGUGAUCU UCGAC GC GG CU CUCAGCUU A CGGC UGA C CGCGACUA@LB@ |||:|:|||| :|||| || || || |||||||| | |||| ||| | ||||||:|@LB@ CUCUAUUAGA GGCUG CG CC GA GAGUCGAA U GCCG ACU G GCGCUGGU@LB@3'-UUU...UACUC CUUCUCA A CAC A G A A CAACU...GUU-5'@LB@ | |@LB@ 100 38@LB@@LB@@LB@Energy -10.12 kcal/mol@LB@Hybridization Energy -56.2583 kcal/mol@LB@Unfolding Energy - mRNA 23.9789 kcal/mol@LB@Unfolding Energy - sRNA 22.1648 kcal/mol@LB@@LB@Position - mRNA 14 -- 78@LB@Position - sRNA 39 -- 99@LB@Position Seed - mRNA 72 -- 78@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 56 |
0.0004529 |
0.03717 |
pa2678 |
N/A |
-16.50 |
0.003530 |
187 -- 235 |
44 -- 90 |
ABC transporter permease |
|
_____________186_________________________________________________236\n_____________|___________________________________________________|\n5'-GGU...CGCCG__________UU_____A_U___UCC________________CA_______CAGUC...CCA-3'\n______________UGGAGAGUUU__CUGUG_G_GGU___CUCUUGGU__ACCGGC__GUCUCGC\n______________||:|||||::__|||:|_|_|||___||||::|:__||||||__:||||||\n______________ACUUCUCAGG__GACGC_C_CCA___GAGAGUCG__UGGCCG__UAGAGCG\n3'-UUU...AUUAG__________CU_____A________________AA______AC_______CUGGU...GUU-5'\n_____________|___________________________________________________|\n_____________91__________________________________________________43\n |
229 -- 235 |
44 -- 50 |
-54.3997 kcal/mol |
18.981 kcal/mol |
18.9194 kcal/mol |
186 236@LB@ | |@LB@5'-GGU...CGCCG UU A U UCC CA CAGUC...CCA-3'@LB@ UGGAGAGUUU CUGUG G GGU CUCUUGGU ACCGGC GUCUCGC@LB@ ||:|||||:: |||:| | ||| ||||::|: |||||| :||||||@LB@ ACUUCUCAGG GACGC C CCA GAGAGUCG UGGCCG UAGAGCG@LB@3'-UUU...AUUAG CU A AA AC CUGGU...GUU-5'@LB@ | |@LB@ 91 43@LB@@LB@@LB@Energy -16.50 kcal/mol@LB@Hybridization Energy -54.3997 kcal/mol@LB@Unfolding Energy - mRNA 18.981 kcal/mol@LB@Unfolding Energy - sRNA 18.9194 kcal/mol@LB@@LB@Position - mRNA 187 -- 235@LB@Position - sRNA 44 -- 90@LB@Position Seed - mRNA 229 -- 235@LB@Position Seed - sRNA 44 -- 50@LB@ |
