135 |
0.002679 |
0.0912 |
pa0035 |
trpA |
-9.18 |
0.258333 |
240 -- 261 |
101 -- 123 |
tryptophan synthase subunit alpha |
|
_____________239_____________________262\n_____________|_______________________|\n5'-GAC...AGCAG________C_CCGC_________CCUUC...CCC-3'\n______________GAAAACCG_G_____CCUGGUGA\n______________:|||||||_|_____||||:|||\n______________UUUUUGGC_C_____GGACUACU\n3'-UUU...CCCAG________A_UAAUC________CCUCU...GUU-5'\n_____________|_______________________|\n_____________124_____________________100\n |
255 -- 261 |
101 -- 107 |
-19.6747 kcal/mol |
8.2509 kcal/mol |
2.24445 kcal/mol |
239 262@LB@ | |@LB@5'-GAC...AGCAG C CCGC CCUUC...CCC-3'@LB@ GAAAACCG G CCUGGUGA@LB@ :||||||| | ||||:|||@LB@ UUUUUGGC C GGACUACU@LB@3'-UUU...CCCAG A UAAUC CCUCU...GUU-5'@LB@ | |@LB@ 124 100@LB@@LB@@LB@Energy -9.18 kcal/mol@LB@Hybridization Energy -19.6747 kcal/mol@LB@Unfolding Energy - mRNA 8.2509 kcal/mol@LB@Unfolding Energy - sRNA 2.24445 kcal/mol@LB@@LB@Position - mRNA 240 -- 261@LB@Position - sRNA 101 -- 123@LB@Position Seed - mRNA 255 -- 261@LB@Position Seed - sRNA 101 -- 107@LB@ |
102 |
0.001679 |
0.07499 |
pa2657 |
N/A |
-10.65 |
0.130856 |
243 -- 261 |
104 -- 121 |
two-component response regulator |
|
_____________242_________________262\n_____________|___________________|\n5'-GGU...CCGAC______A___CC_______CCCGC...GCC-3'\n______________GAACUG_UGG__AGCCUGA\n______________:|||:|_||:__|||||||\n______________UUUGGC_ACU__UCGGACU\n3'-UUU...CAGUU__________AA_______ACUCC...GUU-5'\n_____________|___________________|\n_____________122_________________103\n |
255 -- 261 |
104 -- 110 |
-18.2987 kcal/mol |
5.4095 kcal/mol |
2.24203 kcal/mol |
242 262@LB@ | |@LB@5'-GGU...CCGAC A CC CCCGC...GCC-3'@LB@ GAACUG UGG AGCCUGA@LB@ :|||:| ||: |||||||@LB@ UUUGGC ACU UCGGACU@LB@3'-UUU...CAGUU AA ACUCC...GUU-5'@LB@ | |@LB@ 122 103@LB@@LB@@LB@Energy -10.65 kcal/mol@LB@Hybridization Energy -18.2987 kcal/mol@LB@Unfolding Energy - mRNA 5.4095 kcal/mol@LB@Unfolding Energy - sRNA 2.24203 kcal/mol@LB@@LB@Position - mRNA 243 -- 261@LB@Position - sRNA 104 -- 121@LB@Position Seed - mRNA 255 -- 261@LB@Position Seed - sRNA 104 -- 110@LB@ |
6 |
4.972e-06 |
0.003808 |
pa1336 |
N/A |
-12.31 |
0.054230 |
242 -- 253 |
107 -- 120 |
two-component sensor |
|
_____________241____________254\n_____________|______________|\n5'-GUC...UCACU______________CCGCC...UGA-3'\n______________GACCGUGA__AGCC\n______________:|||||||__||||\n______________UUGGCACU__UCGG\n3'-UUU...AGUUU________AA____ACUAC...GUU-5'\n_____________|______________|\n_____________121____________106\n |
243 -- 249 |
113 -- 119 |
-17.7907 kcal/mol |
3.25304 kcal/mol |
2.2351 kcal/mol |
241 254@LB@ | |@LB@5'-GUC...UCACU CCGCC...UGA-3'@LB@ GACCGUGA AGCC@LB@ :||||||| ||||@LB@ UUGGCACU UCGG@LB@3'-UUU...AGUUU AA ACUAC...GUU-5'@LB@ | |@LB@ 121 106@LB@@LB@@LB@Energy -12.31 kcal/mol@LB@Hybridization Energy -17.7907 kcal/mol@LB@Unfolding Energy - mRNA 3.25304 kcal/mol@LB@Unfolding Energy - sRNA 2.2351 kcal/mol@LB@@LB@Position - mRNA 242 -- 253@LB@Position - sRNA 107 -- 120@LB@Position Seed - mRNA 243 -- 249@LB@Position Seed - sRNA 113 -- 119@LB@ |
199 |
0.005488 |
0.1268 |
pa1158 |
N/A |
-11.27 |
0.095596 |
213 -- 231 |
101 -- 120 |
two-component sensor |
|
_____________212__________________232\n_____________|____________________|\n5'-GCG...GACGC_____C_CGC__________ACGGC...CCG-3'\n______________AGCCG_G____GCCUGAUGA\n______________|:|||_|____|||||||||\n______________UUGGC_C____CGGACUACU\n3'-UUU...AGUUU_____A_UAAU_________CCUCU...GUU-5'\n_____________|____________________|\n_____________121__________________100\n |
225 -- 231 |
101 -- 107 |
-21.6813 kcal/mol |
8.17512 kcal/mol |
2.2437 kcal/mol |
212 232@LB@ | |@LB@5'-GCG...GACGC C CGC ACGGC...CCG-3'@LB@ AGCCG G GCCUGAUGA@LB@ |:||| | |||||||||@LB@ UUGGC C CGGACUACU@LB@3'-UUU...AGUUU A UAAU CCUCU...GUU-5'@LB@ | |@LB@ 121 100@LB@@LB@@LB@Energy -11.27 kcal/mol@LB@Hybridization Energy -21.6813 kcal/mol@LB@Unfolding Energy - mRNA 8.17512 kcal/mol@LB@Unfolding Energy - sRNA 2.2437 kcal/mol@LB@@LB@Position - mRNA 213 -- 231@LB@Position - sRNA 101 -- 120@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 101 -- 107@LB@ |
98 |
0.001381 |
0.06477 |
pa5040 |
pilQ |
-10.76 |
0.123916 |
69 -- 120 |
75 -- 117 |
type 4 fimbrial biogenesis outer membrane protein PilQ |
|
_____________68_____________________________________________________121\n_____________|______________________________________________________|\n5'-GUG...AUAGA______CGAAAUCGUU_____CGGA_______ACUGG______C__________AGCCU...CAC-3'\n______________CGUGAU__________CCUGA____GAGGGGA_____CUGGAG_GUCCG_C_GC\n______________||||||__________|||||____||||:||_____|||:||_|||||_|_||\n______________GCACUA__________GGACU____CUCCUCU_____GACUUC_CAGGC_G_CG\n3'-UUU...UUUUG______AUC____________A__________AUUA_______U_____U_A__CACCC...GUU-5'\n_____________|______________________________________________________|\n_____________118____________________________________________________74\n |
94 -- 100 |
96 -- 102 |
-39.923 kcal/mol |
16.9987 kcal/mol |
12.1721 kcal/mol |
68 121@LB@ | |@LB@5'-GUG...AUAGA CGAAAUCGUU CGGA ACUGG C AGCCU...CAC-3'@LB@ CGUGAU CCUGA GAGGGGA CUGGAG GUCCG C GC@LB@ |||||| ||||| ||||:|| |||:|| ||||| | ||@LB@ GCACUA GGACU CUCCUCU GACUUC CAGGC G CG@LB@3'-UUU...UUUUG AUC A AUUA U U A CACCC...GUU-5'@LB@ | |@LB@ 118 74@LB@@LB@@LB@Energy -10.76 kcal/mol@LB@Hybridization Energy -39.923 kcal/mol@LB@Unfolding Energy - mRNA 16.9987 kcal/mol@LB@Unfolding Energy - sRNA 12.1721 kcal/mol@LB@@LB@Position - mRNA 69 -- 120@LB@Position - sRNA 75 -- 117@LB@Position Seed - mRNA 94 -- 100@LB@Position Seed - sRNA 96 -- 102@LB@ |
42 |
0.000247 |
0.02703 |
pa4550 |
fimU |
-17.01 |
0.002407 |
39 -- 109 |
35 -- 119 |
type 4 fimbrial biogenesis protein FimU |
pa4549 |
_____________38______________________________________________________________________________________110\n_____________|_______________________________________________________________________________________|\n5'-CCU...UCCGU____C__GC____A__________ACCG_______AA___________A____AUG____ACUU____A_____A____________UCCUG...UCA-3'\n______________ACCG_GA___GCC_____GGGAGA______GGAGA_________CGUG_G_CU___CAGC____CCGG_UGAUC_UG_GACCAGUUG\n______________||||_||___|||_____:|||||______|:|||_________||||_|_||___||||____||||_|||||_:|_|||||||||\n______________UGGC_CU___CGG_____UCCUCU______CUUCU_________GCAC_C_GA___GUCG____GGCC_ACUAG_GC_CUGGUCAAC\n3'-UUU...GUUUU____A__AAU___ACUAC______AUUAGA_____CAGGCUGAC____C_A__GA_____AAU_____G_____A__G_________UCACU...GUU-5'\n_____________|_______________________________________________________________________________________|\n_____________120_____________________________________________________________________________________34\n |
103 -- 109 |
35 -- 41 |
-60.4739 kcal/mol |
20.069 kcal/mol |
23.4074 kcal/mol |
38 110@LB@ | |@LB@5'-CCU...UCCGU C GC A ACCG AA A AUG ACUU A A UCCUG...UCA-3'@LB@ ACCG GA GCC GGGAGA GGAGA CGUG G CU CAGC CCGG UGAUC UG GACCAGUUG@LB@ |||| || ||| :||||| |:||| |||| | || |||| |||| ||||| :| |||||||||@LB@ UGGC CU CGG UCCUCU CUUCU GCAC C GA GUCG GGCC ACUAG GC CUGGUCAAC@LB@3'-UUU...GUUUU A AAU ACUAC AUUAGA CAGGCUGAC C A GA AAU G A G UCACU...GUU-5'@LB@ | |@LB@ 120 34@LB@@LB@@LB@Energy -17.01 kcal/mol@LB@Hybridization Energy -60.4739 kcal/mol@LB@Unfolding Energy - mRNA 20.069 kcal/mol@LB@Unfolding Energy - sRNA 23.4074 kcal/mol@LB@@LB@Position - mRNA 39 -- 109@LB@Position - sRNA 35 -- 119@LB@Position Seed - mRNA 103 -- 109@LB@Position Seed - sRNA 35 -- 41@LB@ |
157 |
0.003825 |
0.112 |
pa0687 |
N/A |
-10.29 |
0.156397 |
189 -- 203 |
102 -- 118 |
type II secretion system protein |
pa3102 |
_____________188_______________204\n_____________|_________________|\n5'-AGC...GUGAC___G__C__________CAGAC...GCG-3'\n______________CCG_GA___GCCUGAUG\n______________|||_||___||||||||\n______________GGC_CU___CGGACUAC\n3'-UUU...UUUUU___A__AAU________UCCUC...GUU-5'\n_____________|_________________|\n_____________119_______________101\n |
197 -- 203 |
102 -- 108 |
-18.3707 kcal/mol |
5.84542 kcal/mol |
2.2426 kcal/mol |
188 204@LB@ | |@LB@5'-AGC...GUGAC G C CAGAC...GCG-3'@LB@ CCG GA GCCUGAUG@LB@ ||| || ||||||||@LB@ GGC CU CGGACUAC@LB@3'-UUU...UUUUU A AAU UCCUC...GUU-5'@LB@ | |@LB@ 119 101@LB@@LB@@LB@Energy -10.29 kcal/mol@LB@Hybridization Energy -18.3707 kcal/mol@LB@Unfolding Energy - mRNA 5.84542 kcal/mol@LB@Unfolding Energy - sRNA 2.2426 kcal/mol@LB@@LB@Position - mRNA 189 -- 203@LB@Position - sRNA 102 -- 118@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 102 -- 108@LB@ |
152 |
0.003562 |
0.1073 |
pa3096 |
xcpY |
-9.37 |
0.238148 |
248 -- 259 |
98 -- 110 |
type II secretion system protein L |
|
_____________247___________260\n_____________|_____________|\n5'-ACC...GCGGG_____________ACUGG...GCG-3'\n______________GGCC_GAUGGGGA\n______________:|||_||||:|||\n______________UCGG_CUACUCCU\n3'-UUU...ACUAA____A________CUAUU...GUU-5'\n_____________|_____________|\n_____________111___________97\n |
253 -- 259 |
98 -- 104 |
-17.5774 kcal/mol |
6.04509 kcal/mol |
2.16105 kcal/mol |
247 260@LB@ | |@LB@5'-ACC...GCGGG ACUGG...GCG-3'@LB@ GGCC GAUGGGGA@LB@ :||| ||||:|||@LB@ UCGG CUACUCCU@LB@3'-UUU...ACUAA A CUAUU...GUU-5'@LB@ | |@LB@ 111 97@LB@@LB@@LB@Energy -9.37 kcal/mol@LB@Hybridization Energy -17.5774 kcal/mol@LB@Unfolding Energy - mRNA 6.04509 kcal/mol@LB@Unfolding Energy - sRNA 2.16105 kcal/mol@LB@@LB@Position - mRNA 248 -- 259@LB@Position - sRNA 98 -- 110@LB@Position Seed - mRNA 253 -- 259@LB@Position Seed - sRNA 98 -- 104@LB@ |
21 |
5.061e-05 |
0.01105 |
pa1778 |
cobA |
-17.87 |
0.001208 |
184 -- 227 |
69 -- 109 |
uroporphyrin-III C-methyltransferase |
|
_____________183____________________________________________228\n_____________|______________________________________________|\n5'-GGU...CGAAU______G___AAC__C_____GCG_U____________________GCGGG...UGG-3'\n______________GCCUGA_GAG___GA_GAUGA___G_AAG_GUCUGGCUG_GUGGGU\n______________||||||_|||___||_|||:|___|_|||_|||:|:|||_||||||\n______________CGGACU_CUC___CU_CUAUU___C_UUC_CAGGCUGAC_CACCCA\n3'-UUU...CUAAU______A______________AGA_____U_________G______GAGAG...GUU-5'\n_____________|______________________________________________|\n_____________110____________________________________________68\n |
215 -- 221 |
76 -- 82 |
-46.3721 kcal/mol |
15.5624 kcal/mol |
12.9463 kcal/mol |
183 228@LB@ | |@LB@5'-GGU...CGAAU G AAC C GCG U GCGGG...UGG-3'@LB@ GCCUGA GAG GA GAUGA G AAG GUCUGGCUG GUGGGU@LB@ |||||| ||| || |||:| | ||| |||:|:||| ||||||@LB@ CGGACU CUC CU CUAUU C UUC CAGGCUGAC CACCCA@LB@3'-UUU...CUAAU A AGA U G GAGAG...GUU-5'@LB@ | |@LB@ 110 68@LB@@LB@@LB@Energy -17.87 kcal/mol@LB@Hybridization Energy -46.3721 kcal/mol@LB@Unfolding Energy - mRNA 15.5624 kcal/mol@LB@Unfolding Energy - sRNA 12.9463 kcal/mol@LB@@LB@Position - mRNA 184 -- 227@LB@Position - sRNA 69 -- 109@LB@Position Seed - mRNA 215 -- 221@LB@Position Seed - sRNA 76 -- 82@LB@ |
59 |
0.0005101 |
0.0395 |
pa2173a |
N/A |
-13.53 |
0.026409 |
139 -- 150 |
107 -- 119 |
|
|
_____________138___________151\n_____________|_____________|\n5'-CAA...AACCU_____________AUGGG...CCC-3'\n______________GCCGUGAU_AGCC\n______________:|||||||_||||\n______________UGGCACUA_UCGG\n3'-UUU...GUUUU________A____ACUAC...GUU-5'\n_____________|_____________|\n_____________120___________106\n |
140 -- 146 |
112 -- 118 |
-18.4805 kcal/mol |
2.71645 kcal/mol |
2.23484 kcal/mol |
138 151@LB@ | |@LB@5'-CAA...AACCU AUGGG...CCC-3'@LB@ GCCGUGAU AGCC@LB@ :||||||| ||||@LB@ UGGCACUA UCGG@LB@3'-UUU...GUUUU A ACUAC...GUU-5'@LB@ | |@LB@ 120 106@LB@@LB@@LB@Energy -13.53 kcal/mol@LB@Hybridization Energy -18.4805 kcal/mol@LB@Unfolding Energy - mRNA 2.71645 kcal/mol@LB@Unfolding Energy - sRNA 2.23484 kcal/mol@LB@@LB@Position - mRNA 139 -- 150@LB@Position - sRNA 107 -- 119@LB@Position Seed - mRNA 140 -- 146@LB@Position Seed - sRNA 112 -- 118@LB@ |