12 |
0.000426 |
0.1165 |
b2331 |
smrB |
-16.71 |
0.002472 |
163 -- 205 |
16 -- 57 |
putative DNA endonuclease |
|
_____________162____________________________________________206\n_____________|______________________________________________|\n5'-UCA...GAGUC________UGUA___AAA________A______A____________AAAGA...GAC-3'\n______________GGGUAAAC____GGA___UUAGAAAU_GA_GAC___GAUAAAUGAA\n______________||||||||____:||___|:||||||_:|_|||___:||||||:||\n______________CCCAUUUG____UCU___AGUCUUUA_UU_CUG___UUAUUUAUUU\n3'-UUU...UUAUC_______________GUA________C__A___CCA__________CAAUU...UCG-5'\n_____________|______________________________________________|\n_____________58_____________________________________________15\n |
199 -- 205 |
16 -- 22 |
-27.8577 kcal/mol |
4.82255 kcal/mol |
6.32306 kcal/mol |
162 206@LB@ | |@LB@5'-UCA...GAGUC UGUA AAA A A AAAGA...GAC-3'@LB@ GGGUAAAC GGA UUAGAAAU GA GAC GAUAAAUGAA@LB@ |||||||| :|| |:|||||| :| ||| :||||||:||@LB@ CCCAUUUG UCU AGUCUUUA UU CUG UUAUUUAUUU@LB@3'-UUU...UUAUC GUA C A CCA CAAUU...UCG-5'@LB@ | |@LB@ 58 15@LB@@LB@@LB@Energy -16.71 kcal/mol@LB@Hybridization Energy -27.8577 kcal/mol@LB@Unfolding Energy - mRNA 4.82255 kcal/mol@LB@Unfolding Energy - sRNA 6.32306 kcal/mol@LB@@LB@Position - mRNA 163 -- 205@LB@Position - sRNA 16 -- 57@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 16 -- 22@LB@ |
190 |
0.03178 |
0.5492 |
b2266 |
elaB |
-7.52 |
0.274944 |
163 -- 222 |
3 -- 61 |
putative membrane-anchored DUF883 family ribosome-binding protein |
|
_____________162_____________________________________________________________223\n_____________|_______________________________________________________________|\n5'-ACU...UGUCU____UUAGU______U_____C_C_______GA___AG____UC___UC______________CACGU...AUC-3'\n______________AUAG_____GACAGG__UUUA_G_AAAUGGA__ACG__AAUG__UAA__AGUU__UGGUGAUA\n______________||||_____:||||:__||:|_|_|||||:|__|||__|||:__|||__||||__||:|||||\n______________UAUC_____UUGUCU__AAGU_C_UUUACUU__UGC__UUAU__AUU__UCAA__ACUACUAU\n3'-UUU...AACUU____CCCAU______GU______________AC___CA____UU_________UU________CG-5'\n_____________|_______________________________________________________________|\n_____________62______________________________________________________________2\n |
216 -- 222 |
3 -- 9 |
-26.4945 kcal/mol |
12.6276 kcal/mol |
6.34398 kcal/mol |
162 223@LB@ | |@LB@5'-ACU...UGUCU UUAGU U C C GA AG UC UC CACGU...AUC-3'@LB@ AUAG GACAGG UUUA G AAAUGGA ACG AAUG UAA AGUU UGGUGAUA@LB@ |||| :||||: ||:| | |||||:| ||| |||: ||| |||| ||:|||||@LB@ UAUC UUGUCU AAGU C UUUACUU UGC UUAU AUU UCAA ACUACUAU@LB@3'-UUU...AACUU CCCAU GU AC CA UU UU CG-5'@LB@ | |@LB@ 62 2@LB@@LB@@LB@Energy -7.52 kcal/mol@LB@Hybridization Energy -26.4945 kcal/mol@LB@Unfolding Energy - mRNA 12.6276 kcal/mol@LB@Unfolding Energy - sRNA 6.34398 kcal/mol@LB@@LB@Position - mRNA 163 -- 222@LB@Position - sRNA 3 -- 61@LB@Position Seed - mRNA 216 -- 222@LB@Position Seed - sRNA 3 -- 9@LB@ |
157 |
0.02559 |
0.526 |
b2057 |
wcaC |
-8.75 |
0.168472 |
165 -- 205 |
16 -- 58 |
putative glycosyl transferase |
|
_____________164___________________________________________206\n_____________|_____________________________________________|\n5'-GUC...GCGCU__U__________AAA____CGC_______A_____U________UAUUU...CAC-3'\n______________GG_GGUGGG_AGA_____AG____GAGUGA_GGUAA_UAAAUGAA\n______________||_|||:::_|||_____||____||:|||_|||||_|||||:||\n______________CC_CCAUUU_UCU_____UC____CUUACU_CCAUU_AUUUAUUU\n3'-UUU...UUUAU_________G___GUAAG__UUUA______G______________CAAUU...UCG-5'\n_____________|_____________________________________________|\n_____________59____________________________________________15\n |
199 -- 205 |
16 -- 22 |
-25.2337 kcal/mol |
10.162 kcal/mol |
6.32308 kcal/mol |
164 206@LB@ | |@LB@5'-GUC...GCGCU U AAA CGC A U UAUUU...CAC-3'@LB@ GG GGUGGG AGA AG GAGUGA GGUAA UAAAUGAA@LB@ || |||::: ||| || ||:||| ||||| |||||:||@LB@ CC CCAUUU UCU UC CUUACU CCAUU AUUUAUUU@LB@3'-UUU...UUUAU G GUAAG UUUA G CAAUU...UCG-5'@LB@ | |@LB@ 59 15@LB@@LB@@LB@Energy -8.75 kcal/mol@LB@Hybridization Energy -25.2337 kcal/mol@LB@Unfolding Energy - mRNA 10.162 kcal/mol@LB@Unfolding Energy - sRNA 6.32308 kcal/mol@LB@@LB@Position - mRNA 165 -- 205@LB@Position - sRNA 16 -- 58@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 16 -- 22@LB@ |
5 |
3.022e-05 |
0.01984 |
b4553 |
ysaB |
-16.91 |
0.002179 |
166 -- 209 |
3 -- 54 |
uncharacterized protein |
|
_____________165__________________________________________________210\n_____________|____________________________________________________|\n5'-UCA...AUAAA___UA____UCACCUGCAAACCA_____________________________AACGC...AUC-3'\n______________UAA__AGAC______________GACGGUAAU________UUAAUGAUGAUG\n______________|||__||||______________|||||||||________|||||||||||:\n______________AUU__UCUG______________CUGCCAUUA________AAUUACUACUAU\n3'-UUU...UCCCC___UG____UAAGUCUUUACUUA_________UUUAUUUC____________CG-5'\n_____________|____________________________________________________|\n_____________55___________________________________________________2\n |
203 -- 209 |
3 -- 9 |
-28.2861 kcal/mol |
5.03949 kcal/mol |
6.3375 kcal/mol |
165 210@LB@ | |@LB@5'-UCA...AUAAA UA UCACCUGCAAACCA AACGC...AUC-3'@LB@ UAA AGAC GACGGUAAU UUAAUGAUGAUG@LB@ ||| |||| ||||||||| |||||||||||:@LB@ AUU UCUG CUGCCAUUA AAUUACUACUAU@LB@3'-UUU...UCCCC UG UAAGUCUUUACUUA UUUAUUUC CG-5'@LB@ | |@LB@ 55 2@LB@@LB@@LB@Energy -16.91 kcal/mol@LB@Hybridization Energy -28.2861 kcal/mol@LB@Unfolding Energy - mRNA 5.03949 kcal/mol@LB@Unfolding Energy - sRNA 6.3375 kcal/mol@LB@@LB@Position - mRNA 166 -- 209@LB@Position - sRNA 3 -- 54@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 3 -- 9@LB@ |
71 |
0.01035 |
0.4523 |
b3365 |
nirB |
-13.52 |
0.016420 |
166 -- 211 |
14 -- 63 |
nitrite reductase large subunit NAD(P)H-binding |
|
_____________165_________________________________________________212\n_____________|___________________________________________________|\n5'-AUC...CGUUA_______C__________AA_________C______AAA______C_____CAGAC...UUA-3'\n______________AGGUAGG_GGU_AAUAGA_____AGAAAU_GA_GGC___AAUGAG_AAAGU\n______________|::||||_|||_||:|||_____||||||_:|_|:|___|||:|:_|||||\n______________UUUAUCC_CCA_UUGUCU_____UCUUUA_UU_CUG___UUAUUU_UUUCA\n3'-UUU...CCAAC___________U______GUAAG______C__A___CCA______A_____AUUAC...UCG-5'\n_____________|___________________________________________________|\n_____________64__________________________________________________13\n |
166 -- 172 |
57 -- 63 |
-27.6903 kcal/mol |
7.84168 kcal/mol |
6.33269 kcal/mol |
165 212@LB@ | |@LB@5'-AUC...CGUUA C AA C AAA C CAGAC...UUA-3'@LB@ AGGUAGG GGU AAUAGA AGAAAU GA GGC AAUGAG AAAGU@LB@ |::|||| ||| ||:||| |||||| :| |:| |||:|: |||||@LB@ UUUAUCC CCA UUGUCU UCUUUA UU CUG UUAUUU UUUCA@LB@3'-UUU...CCAAC U GUAAG C A CCA A AUUAC...UCG-5'@LB@ | |@LB@ 64 13@LB@@LB@@LB@Energy -13.52 kcal/mol@LB@Hybridization Energy -27.6903 kcal/mol@LB@Unfolding Energy - mRNA 7.84168 kcal/mol@LB@Unfolding Energy - sRNA 6.33269 kcal/mol@LB@@LB@Position - mRNA 166 -- 211@LB@Position - sRNA 14 -- 63@LB@Position Seed - mRNA 166 -- 172@LB@Position Seed - sRNA 57 -- 63@LB@ |
55 |
0.006796 |
0.4056 |
b3192 |
mlaC |
-12.17 |
0.033659 |
167 -- 226 |
1 -- 57 |
ABC transporter maintaining OM lipid asymmetry periplasmic binding protein |
|
_____________166_______________________________________________________________227\n_____________|_________________________________________________________________|\n5'-GGA...CCUGU_____C______AAUAAU____________CC____C_____UU____C_U___________C__UUUGC...AGG-3'\n______________GGGUA_AAC_GA______UUCAGGA__GAA__GACG___AUG__UAAA_G_UUAAUGAUGGU_GC\n______________|||||_|||_||______|||||:|__|||__||||___||:__||||_|_|||||||||:|_||\n______________CCCAU_UUG_CU______AAGUCUU__CUU__CUGC___UAU__AUUU_C_AAUUACUACUA_CG\n3'-UUU...UUAUC_________U__GU___________UA___A_____CAU___UU__________________U__-5'\n_____________|________________________________________________________________|\n_____________58_______________________________________________________________1\n |
217 -- 223 |
4 -- 10 |
-32.157 kcal/mol |
13.6506 kcal/mol |
6.33758 kcal/mol |
166 227@LB@ | |@LB@5'-GGA...CCUGU C AAUAAU CC C UU C U C UUUGC...AGG-3'@LB@ GGGUA AAC GA UUCAGGA GAA GACG AUG UAAA G UUAAUGAUGGU GC@LB@ ||||| ||| || |||||:| ||| |||| ||: |||| | |||||||||:| ||@LB@ CCCAU UUG CU AAGUCUU CUU CUGC UAU AUUU C AAUUACUACUA CG@LB@3'-UUU...UUAUC U GU UA A CAU UU U -5'@LB@ | |@LB@ 58 1@LB@@LB@@LB@Energy -12.17 kcal/mol@LB@Hybridization Energy -32.157 kcal/mol@LB@Unfolding Energy - mRNA 13.6506 kcal/mol@LB@Unfolding Energy - sRNA 6.33758 kcal/mol@LB@@LB@Position - mRNA 167 -- 226@LB@Position - sRNA 1 -- 57@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 4 -- 10@LB@ |
142 |
0.02395 |
0.526 |
b0192 |
nlpE |
-14.44 |
0.009771 |
167 -- 226 |
1 -- 55 |
lipoprotein involved with copper homeostasis and adhesion |
|
_____________166_______________________________________________________________227\n_____________|_________________________________________________________________|\n5'-UCA...GCAAA___C_______G________AAAAAGAAG____G________AA_______C____A____C___GAUGG...CGC-3'\n______________GUG_GCAG_CG_UCGGGAAU_________GAAU_GAUGGUGA_____AAAG__GAU_GUGA_AGC\n______________||:_:|||_|:_||:|:|||_________||||_||:|||:|_____||||__:||_:|||_|||\n______________CAU_UGUC_GU_AGUCUUUA_________CUUA_CUGCCAUU_____UUUC__UUA_UACU_UCG\n3'-UUU...AUCCC___U____U__A______________________________AUUUA____AA___C____A___-5'\n_____________|________________________________________________________________|\n_____________56_______________________________________________________________1\n |
201 -- 207 |
24 -- 30 |
-31.0616 kcal/mol |
10.2836 kcal/mol |
6.33758 kcal/mol |
166 227@LB@ | |@LB@5'-UCA...GCAAA C G AAAAAGAAG G AA C A C GAUGG...CGC-3'@LB@ GUG GCAG CG UCGGGAAU GAAU GAUGGUGA AAAG GAU GUGA AGC@LB@ ||: :||| |: ||:|:||| |||| ||:|||:| |||| :|| :||| |||@LB@ CAU UGUC GU AGUCUUUA CUUA CUGCCAUU UUUC UUA UACU UCG@LB@3'-UUU...AUCCC U U A AUUUA AA C A -5'@LB@ | |@LB@ 56 1@LB@@LB@@LB@Energy -14.44 kcal/mol@LB@Hybridization Energy -31.0616 kcal/mol@LB@Unfolding Energy - mRNA 10.2836 kcal/mol@LB@Unfolding Energy - sRNA 6.33758 kcal/mol@LB@@LB@Position - mRNA 167 -- 226@LB@Position - sRNA 1 -- 55@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 24 -- 30@LB@ |
1 |
2.411e-07 |
0.0007914 |
b0889 |
lrp |
-21.69 |
0.000065 |
168 -- 212 |
1 -- 64 |
leucine-responsive global transcriptional regulator |
|
_____________167_______________________________________________________________213\n_____________|_________________________________________________________________|\n5'-GUG...AGACA_________AA_______AUA_____________________________________A______AAGAA...AGC-3'\n______________GGAGUAGGG______GGA____CAGAGA_____GAC_______AAUAA___UAAUGGU_GAUAGC\n______________|:|:|||||______:||____||||:|_____|||_______|||||___|||||:|_||||||\n______________CUUUAUCCC______UCU____GUCUUU_____CUG_______UUAUU___AUUACUA_CUAUCG\n3'-UUU...GCCAA_________CAUUUG___GUAA______ACUUA___CCAUUAU_____UCA______________-5'\n_____________|________________________________________________________________|\n_____________65_______________________________________________________________1\n |
199 -- 205 |
7 -- 13 |
-30.6118 kcal/mol |
2.57614 kcal/mol |
6.344 kcal/mol |
167 213@LB@ | |@LB@5'-GUG...AGACA AA AUA A AAGAA...AGC-3'@LB@ GGAGUAGGG GGA CAGAGA GAC AAUAA UAAUGGU GAUAGC@LB@ |:|:||||| :|| ||||:| ||| ||||| |||||:| ||||||@LB@ CUUUAUCCC UCU GUCUUU CUG UUAUU AUUACUA CUAUCG@LB@3'-UUU...GCCAA CAUUUG GUAA ACUUA CCAUUAU UCA -5'@LB@ | |@LB@ 65 1@LB@@LB@@LB@Energy -21.69 kcal/mol@LB@Hybridization Energy -30.6118 kcal/mol@LB@Unfolding Energy - mRNA 2.57614 kcal/mol@LB@Unfolding Energy - sRNA 6.344 kcal/mol@LB@@LB@Position - mRNA 168 -- 212@LB@Position - sRNA 1 -- 64@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 7 -- 13@LB@ |
91 |
0.01489 |
0.5059 |
b3805 |
hemC |
-12.98 |
0.021909 |
168 -- 195 |
24 -- 52 |
hydroxymethylbilane synthase |
|
_____________167___________________________196\n_____________|_____________________________|\n5'-AAA...GUUAG_______CA_____UGAU___________CAAGC...GCC-3'\n______________GAUGGAC___CGGA____AAUGACGGUAA\n______________:|::|||___|:||____|||||||||||\n______________UUGUCUG___GUCU____UUACUGCCAUU\n3'-UUU...CCCAU_______UAA____UUAC___________AUUUA...UCG-5'\n_____________|_____________________________|\n_____________53____________________________23\n |
189 -- 195 |
24 -- 30 |
-23.6136 kcal/mol |
4.33145 kcal/mol |
6.2974 kcal/mol |
167 196@LB@ | |@LB@5'-AAA...GUUAG CA UGAU CAAGC...GCC-3'@LB@ GAUGGAC CGGA AAUGACGGUAA@LB@ :|::||| |:|| |||||||||||@LB@ UUGUCUG GUCU UUACUGCCAUU@LB@3'-UUU...CCCAU UAA UUAC AUUUA...UCG-5'@LB@ | |@LB@ 53 23@LB@@LB@@LB@Energy -12.98 kcal/mol@LB@Hybridization Energy -23.6136 kcal/mol@LB@Unfolding Energy - mRNA 4.33145 kcal/mol@LB@Unfolding Energy - sRNA 6.2974 kcal/mol@LB@@LB@Position - mRNA 168 -- 195@LB@Position - sRNA 24 -- 52@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 24 -- 30@LB@ |
29 |
0.00201 |
0.2275 |
b1479 |
maeA |
-13.16 |
0.019904 |
170 -- 200 |
29 -- 59 |
malate dehydrogenase decarboxylating NAD-requiring; malic enzyme |
|
_____________169_________________________________201\n_____________|___________________________________|\n5'-UAG...CCCCC___________________AAAAA___________AUGGA...GCA-3'\n______________AGGG____AUGGAUAUUCA_____GAGUGAGUGAC\n______________||||____|::||:|||||_____:|:|||:||||\n______________UCCC____UGUCUGUAAGU_____UUUACUUACUG\n3'-UUU...CUUUA____CAUU___________C_______________CCAUU...UCG-5'\n_____________|___________________________________|\n_____________60__________________________________28\n |
194 -- 200 |
29 -- 35 |
-27.1811 kcal/mol |
7.73175 kcal/mol |
6.28641 kcal/mol |
169 201@LB@ | |@LB@5'-UAG...CCCCC AAAAA AUGGA...GCA-3'@LB@ AGGG AUGGAUAUUCA GAGUGAGUGAC@LB@ |||| |::||:||||| :|:|||:||||@LB@ UCCC UGUCUGUAAGU UUUACUUACUG@LB@3'-UUU...CUUUA CAUU C CCAUU...UCG-5'@LB@ | |@LB@ 60 28@LB@@LB@@LB@Energy -13.16 kcal/mol@LB@Hybridization Energy -27.1811 kcal/mol@LB@Unfolding Energy - mRNA 7.73175 kcal/mol@LB@Unfolding Energy - sRNA 6.28641 kcal/mol@LB@@LB@Position - mRNA 170 -- 200@LB@Position - sRNA 29 -- 59@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 29 -- 35@LB@ |