27 |
0.001735 |
0.211 |
b3052 |
hldE |
-15.91 |
0.004078 |
227 -- 261 |
1 -- 47 |
heptose 7-phosphate kinase and heptose 1-phosphate adenyltransferase |
|
_____________226______________________________________________262\n_____________|________________________________________________|\n5'-GCG...UUUGA____G_____________________________________UGAU__UGGAU...CGC-3'\n______________ACGU_CAG____GAGUGAUGGU_________GGUUGGUGAUG____GC\n______________||:|_|||____||:|||:|||_________:|||::|||||____||\n______________UGUA_GUC____CUUACUGCCA_________UCAAUUACUAC____CG\n3'-UUU...UUGUC____A___UUUA__________UUAUUUAUU___________UAU___-5'\n_____________|_______________________________________________|\n_____________48______________________________________________1\n |
249 -- 255 |
6 -- 12 |
-30.7414 kcal/mol |
8.50852 kcal/mol |
6.32011 kcal/mol |
226 262@LB@ | |@LB@5'-GCG...UUUGA G UGAU UGGAU...CGC-3'@LB@ ACGU CAG GAGUGAUGGU GGUUGGUGAUG GC@LB@ ||:| ||| ||:|||:||| :|||::||||| ||@LB@ UGUA GUC CUUACUGCCA UCAAUUACUAC CG@LB@3'-UUU...UUGUC A UUUA UUAUUUAUU UAU -5'@LB@ | |@LB@ 48 1@LB@@LB@@LB@Energy -15.91 kcal/mol@LB@Hybridization Energy -30.7414 kcal/mol@LB@Unfolding Energy - mRNA 8.50852 kcal/mol@LB@Unfolding Energy - sRNA 6.32011 kcal/mol@LB@@LB@Position - mRNA 227 -- 261@LB@Position - sRNA 1 -- 47@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 6 -- 12@LB@ |
149 |
0.02481 |
0.526 |
b2108 |
yehA |
-13.80 |
0.014025 |
228 -- 241 |
1 -- 14 |
putative fimbrial-like adhesin protein |
|
_____________227____________242\n_____________|______________|\n5'-GUU...UUAUA______________UAUGC...UUG-3'\n______________UUAAUGAUGAUGGU\n______________|||||||||||:|:\n______________AAUUACUACUAUCG\n3'-UUU...AUUUC______________-5'\n_____________|_____________|\n_____________15____________1\n |
235 -- 241 |
1 -- 7 |
-16.5389 kcal/mol |
2.69058 kcal/mol |
0.0473494 kcal/mol |
227 242@LB@ | |@LB@5'-GUU...UUAUA UAUGC...UUG-3'@LB@ UUAAUGAUGAUGGU@LB@ |||||||||||:|:@LB@ AAUUACUACUAUCG@LB@3'-UUU...AUUUC -5'@LB@ | |@LB@ 15 1@LB@@LB@@LB@Energy -13.80 kcal/mol@LB@Hybridization Energy -16.5389 kcal/mol@LB@Unfolding Energy - mRNA 2.69058 kcal/mol@LB@Unfolding Energy - sRNA 0.0473494 kcal/mol@LB@@LB@Position - mRNA 228 -- 241@LB@Position - sRNA 1 -- 14@LB@Position Seed - mRNA 235 -- 241@LB@Position Seed - sRNA 1 -- 7@LB@ |
127 |
0.01998 |
0.5155 |
b2922 |
yggE |
-8.69 |
0.172995 |
232 -- 253 |
1 -- 26 |
oxidative stress defense protein |
|
_____________231________________________254\n_____________|__________________________|\n5'-GCA...GGCAU________________C_________AGCGC...CCG-3'\n______________UAAUGGGUA___UUAG_GG_GAUGGC\n______________||||:::||___|||:_|:_|||:||\n______________AUUAUUUAU___AAUU_CU_CUAUCG\n3'-UUU...CUGCC_________UUC____A__A______-5'\n_____________|_________________________|\n_____________27________________________1\n |
234 -- 240 |
18 -- 24 |
-12.7828 kcal/mol |
3.51669 kcal/mol |
0.580494 kcal/mol |
231 254@LB@ | |@LB@5'-GCA...GGCAU C AGCGC...CCG-3'@LB@ UAAUGGGUA UUAG GG GAUGGC@LB@ ||||:::|| |||: |: |||:||@LB@ AUUAUUUAU AAUU CU CUAUCG@LB@3'-UUU...CUGCC UUC A A -5'@LB@ | |@LB@ 27 1@LB@@LB@@LB@Energy -8.69 kcal/mol@LB@Hybridization Energy -12.7828 kcal/mol@LB@Unfolding Energy - mRNA 3.51669 kcal/mol@LB@Unfolding Energy - sRNA 0.580494 kcal/mol@LB@@LB@Position - mRNA 232 -- 253@LB@Position - sRNA 1 -- 26@LB@Position Seed - mRNA 234 -- 240@LB@Position Seed - sRNA 18 -- 24@LB@ |
120 |
0.01923 |
0.5155 |
b4004 |
zraR |
-8.11 |
0.219313 |
234 -- 248 |
1 -- 12 |
fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein |
b2220 |
_____________233_____________249\n_____________|_______________|\n5'-GGA...UGGUG________CAU____CACUG...CGC-3'\n______________GAUGAUGA___UAGC\n______________:|||||||___||||\n______________UUACUACU___AUCG\n3'-UUU...UUCAA_______________-5'\n_____________|______________|\n_____________13_____________1\n |
235 -- 241 |
5 -- 11 |
-11.3572 kcal/mol |
3.21186 kcal/mol |
0.0394463 kcal/mol |
233 249@LB@ | |@LB@5'-GGA...UGGUG CAU CACUG...CGC-3'@LB@ GAUGAUGA UAGC@LB@ :||||||| ||||@LB@ UUACUACU AUCG@LB@3'-UUU...UUCAA -5'@LB@ | |@LB@ 13 1@LB@@LB@@LB@Energy -8.11 kcal/mol@LB@Hybridization Energy -11.3572 kcal/mol@LB@Unfolding Energy - mRNA 3.21186 kcal/mol@LB@Unfolding Energy - sRNA 0.0394463 kcal/mol@LB@@LB@Position - mRNA 234 -- 248@LB@Position - sRNA 1 -- 12@LB@Position Seed - mRNA 235 -- 241@LB@Position Seed - sRNA 5 -- 11@LB@ |
150 |
0.02489 |
0.526 |
b2088 |
insE1 |
-9.25 |
0.136086 |
235 -- 276 |
1 -- 55 |
IS3 transposase A |
b0298 b0373 b0540 b1027 |
_____________234_____________________________________________________277\n_____________|_______________________________________________________|\n5'-ACC...ACCCC_______________CC_______UU__C____________CCC___________UUGCU...CUG-3'\n______________GUAAACAG_CAUUCG____UGAAU__CG______AGUGAAG____UGA____AGC\n______________||||||||_|||||:____|||||__||______|:|:|||____|||____|||\n______________CAUUUGUC_GUAAGU____ACUUA__GC______UUAUUUC____ACU____UCG\n3'-UUU...AUCCC________U______CUUU_____CU__CAUUAU_______AAUU___ACUA___-5'\n_____________|______________________________________________________|\n_____________56_____________________________________________________1\n |
261 -- 267 |
15 -- 21 |
-23.7484 kcal/mol |
8.16492 kcal/mol |
6.33758 kcal/mol |
234 277@LB@ | |@LB@5'-ACC...ACCCC CC UU C CCC UUGCU...CUG-3'@LB@ GUAAACAG CAUUCG UGAAU CG AGUGAAG UGA AGC@LB@ |||||||| |||||: ||||| || |:|:||| ||| |||@LB@ CAUUUGUC GUAAGU ACUUA GC UUAUUUC ACU UCG@LB@3'-UUU...AUCCC U CUUU CU CAUUAU AAUU ACUA -5'@LB@ | |@LB@ 56 1@LB@@LB@@LB@Energy -9.25 kcal/mol@LB@Hybridization Energy -23.7484 kcal/mol@LB@Unfolding Energy - mRNA 8.16492 kcal/mol@LB@Unfolding Energy - sRNA 6.33758 kcal/mol@LB@@LB@Position - mRNA 235 -- 276@LB@Position - sRNA 1 -- 55@LB@Position Seed - mRNA 261 -- 267@LB@Position Seed - sRNA 15 -- 21@LB@ |
11 |
0.0003561 |
0.1063 |
b3857 |
mobA |
-16.95 |
0.002119 |
239 -- 276 |
15 -- 59 |
molybdopterin-guanine dinucleotide synthase |
|
_____________238_______________________________________________277\n_____________|_________________________________________________|\n5'-UCC...CUGGC___C______GC___________________G_____C___________GAUUG...AAC-3'\n______________AGG_GGUAAA__CAGAC__________GAAU_GGCGG__GUAGAUAAAG\n______________|||_||||||__|||||__________||||_|:|||__:||:||||||\n______________UCC_CCAUUU__GUCUG__________CUUA_CUGCC__UAUUUAUUUC\n3'-UUU...CUUUA_________________UAAGUCUUUA__________AU__________AAUUA...UCG-5'\n_____________|_________________________________________________|\n_____________60________________________________________________14\n |
270 -- 276 |
15 -- 21 |
-31.2728 kcal/mol |
7.99479 kcal/mol |
6.32587 kcal/mol |
238 277@LB@ | |@LB@5'-UCC...CUGGC C GC G C GAUUG...AAC-3'@LB@ AGG GGUAAA CAGAC GAAU GGCGG GUAGAUAAAG@LB@ ||| |||||| ||||| |||| |:||| :||:||||||@LB@ UCC CCAUUU GUCUG CUUA CUGCC UAUUUAUUUC@LB@3'-UUU...CUUUA UAAGUCUUUA AU AAUUA...UCG-5'@LB@ | |@LB@ 60 14@LB@@LB@@LB@Energy -16.95 kcal/mol@LB@Hybridization Energy -31.2728 kcal/mol@LB@Unfolding Energy - mRNA 7.99479 kcal/mol@LB@Unfolding Energy - sRNA 6.32587 kcal/mol@LB@@LB@Position - mRNA 239 -- 276@LB@Position - sRNA 15 -- 59@LB@Position Seed - mRNA 270 -- 276@LB@Position Seed - sRNA 15 -- 21@LB@ |
37 |
0.00362 |
0.3212 |
b4479 |
dgoR |
-15.45 |
0.005416 |
239 -- 256 |
41 -- 57 |
D-galactonate catabolism operon transcriptional repressor |
|
_____________238________________257\n_____________|__________________|\n5'-UUU...ACGCU___________U______CGGCA...AAC-3'\n______________GGGUAAACAGA_CGUUCA\n______________|||||||||||_|:||||\n______________CCCAUUUGUCU_GUAAGU\n3'-UUU...UUAUC__________________CUUUA...UCG-5'\n_____________|__________________|\n_____________58_________________40\n |
243 -- 249 |
47 -- 53 |
-24.0794 kcal/mol |
2.38777 kcal/mol |
6.24592 kcal/mol |
238 257@LB@ | |@LB@5'-UUU...ACGCU U CGGCA...AAC-3'@LB@ GGGUAAACAGA CGUUCA@LB@ ||||||||||| |:||||@LB@ CCCAUUUGUCU GUAAGU@LB@3'-UUU...UUAUC CUUUA...UCG-5'@LB@ | |@LB@ 58 40@LB@@LB@@LB@Energy -15.45 kcal/mol@LB@Hybridization Energy -24.0794 kcal/mol@LB@Unfolding Energy - mRNA 2.38777 kcal/mol@LB@Unfolding Energy - sRNA 6.24592 kcal/mol@LB@@LB@Position - mRNA 239 -- 256@LB@Position - sRNA 41 -- 57@LB@Position Seed - mRNA 243 -- 249@LB@Position Seed - sRNA 47 -- 53@LB@ |
121 |
0.01924 |
0.5155 |
b0074 |
leuA |
-11.43 |
0.049038 |
243 -- 261 |
39 -- 56 |
2-isopropylmalate synthase |
|
_____________242_________________262\n_____________|___________________|\n5'-CAU...GCGAC______________A____CAAGC...UGG-3'\n______________GGUGAACAGGCGUU_CAGG\n______________|||:|||||:|:||_|||:\n______________CCAUUUGUCUGUAA_GUCU\n3'-UUU...UAUCC___________________UUACU...UCG-5'\n_____________|___________________|\n_____________57__________________38\n |
247 -- 253 |
46 -- 52 |
-24.0317 kcal/mol |
6.35652 kcal/mol |
6.24929 kcal/mol |
242 262@LB@ | |@LB@5'-CAU...GCGAC A CAAGC...UGG-3'@LB@ GGUGAACAGGCGUU CAGG@LB@ |||:|||||:|:|| |||:@LB@ CCAUUUGUCUGUAA GUCU@LB@3'-UUU...UAUCC UUACU...UCG-5'@LB@ | |@LB@ 57 38@LB@@LB@@LB@Energy -11.43 kcal/mol@LB@Hybridization Energy -24.0317 kcal/mol@LB@Unfolding Energy - mRNA 6.35652 kcal/mol@LB@Unfolding Energy - sRNA 6.24929 kcal/mol@LB@@LB@Position - mRNA 243 -- 261@LB@Position - sRNA 39 -- 56@LB@Position Seed - mRNA 247 -- 253@LB@Position Seed - sRNA 46 -- 52@LB@ |
187 |
0.03165 |
0.5492 |
b2717 |
hycI |
-9.48 |
0.123006 |
243 -- 251 |
1 -- 9 |
protease involved in processing C-terminal end of HycE |
|
_____________242_______252\n_____________|_________|\n5'-AGC...UGGGC_________GCAGG...ACU-3'\n______________GAUGAUGGC\n______________||||||:||\n______________CUACUAUCG\n3'-UUU...AAUUA_________-5'\n_____________|________|\n_____________10_______1\n |
245 -- 251 |
1 -- 7 |
-13.2104 kcal/mol |
3.71514 kcal/mol |
0.0200155 kcal/mol |
242 252@LB@ | |@LB@5'-AGC...UGGGC GCAGG...ACU-3'@LB@ GAUGAUGGC@LB@ ||||||:||@LB@ CUACUAUCG@LB@3'-UUU...AAUUA -5'@LB@ | |@LB@ 10 1@LB@@LB@@LB@Energy -9.48 kcal/mol@LB@Hybridization Energy -13.2104 kcal/mol@LB@Unfolding Energy - mRNA 3.71514 kcal/mol@LB@Unfolding Energy - sRNA 0.0200155 kcal/mol@LB@@LB@Position - mRNA 243 -- 251@LB@Position - sRNA 1 -- 9@LB@Position Seed - mRNA 245 -- 251@LB@Position Seed - sRNA 1 -- 7@LB@ |
162 |
0.02632 |
0.526 |
b1886 |
tar |
-10.00 |
0.096892 |
244 -- 251 |
53 -- 60 |
methyl-accepting chemotaxis protein II |
|
_____________243______252\n_____________|________|\n5'-UGC...GGUGC________UUCGC...UUC-3'\n______________UGGGGGUA\n______________|:||||||\n______________AUCCCCAU\n3'-UUU...ACUUU________UUGUC...UCG-5'\n_____________|________|\n_____________61_______52\n |
245 -- 251 |
53 -- 59 |
-12.2006 kcal/mol |
2.12623 kcal/mol |
0.0710089 kcal/mol |
243 252@LB@ | |@LB@5'-UGC...GGUGC UUCGC...UUC-3'@LB@ UGGGGGUA@LB@ |:||||||@LB@ AUCCCCAU@LB@3'-UUU...ACUUU UUGUC...UCG-5'@LB@ | |@LB@ 61 52@LB@@LB@@LB@Energy -10.00 kcal/mol@LB@Hybridization Energy -12.2006 kcal/mol@LB@Unfolding Energy - mRNA 2.12623 kcal/mol@LB@Unfolding Energy - sRNA 0.0710089 kcal/mol@LB@@LB@Position - mRNA 244 -- 251@LB@Position - sRNA 53 -- 60@LB@Position Seed - mRNA 245 -- 251@LB@Position Seed - sRNA 53 -- 59@LB@ |