| 133 |
0.02154 |
0.526 |
b1105 |
lpoB |
-10.17 |
0.089721 |
187 -- 196 |
50 -- 59 |
OM lipoprotein stimulator of MrcB transpeptidase |
|
_____________186________197\n_____________|__________|\n5'-UUA...UUGUA__________CUUGA...AAC-3'\n______________AGGGGUGAAU\n______________||||||:||:\n______________UCCCCAUUUG\n3'-UUU...CUUUA__________UCUGU...UCG-5'\n_____________|__________|\n_____________60_________49\n |
190 -- 196 |
50 -- 56 |
-15.1396 kcal/mol |
4.24097 kcal/mol |
0.728772 kcal/mol |
186 197@LB@ | |@LB@5'-UUA...UUGUA CUUGA...AAC-3'@LB@ AGGGGUGAAU@LB@ ||||||:||:@LB@ UCCCCAUUUG@LB@3'-UUU...CUUUA UCUGU...UCG-5'@LB@ | |@LB@ 60 49@LB@@LB@@LB@Energy -10.17 kcal/mol@LB@Hybridization Energy -15.1396 kcal/mol@LB@Unfolding Energy - mRNA 4.24097 kcal/mol@LB@Unfolding Energy - sRNA 0.728772 kcal/mol@LB@@LB@Position - mRNA 187 -- 196@LB@Position - sRNA 50 -- 59@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 50 -- 56@LB@ |
| 144 |
0.02445 |
0.526 |
b3441 |
yhhY |
-11.04 |
0.059403 |
187 -- 218 |
22 -- 53 |
aminoacyl nucleotide detoxifying acetyltransferase |
|
_____________186________________________________219\n_____________|__________________________________|\n5'-CCC...CCCCA__GA_____A______________GAUA______CGCCA...UGC-3'\n______________AA__GGACA___AGGAAUGAGUGA____GUAAUA\n______________||__:||||___||:|||||:|||____||||||\n______________UU__UCUGU___UCUUUACUUACU____CAUUAU\n3'-UUU...CCCCA__UG_____AAG____________GC________UUAUU...UCG-5'\n_____________|__________________________________|\n_____________54_________________________________21\n |
202 -- 208 |
30 -- 36 |
-22.9472 kcal/mol |
5.59747 kcal/mol |
6.31329 kcal/mol |
186 219@LB@ | |@LB@5'-CCC...CCCCA GA A GAUA CGCCA...UGC-3'@LB@ AA GGACA AGGAAUGAGUGA GUAAUA@LB@ || :|||| ||:|||||:||| ||||||@LB@ UU UCUGU UCUUUACUUACU CAUUAU@LB@3'-UUU...CCCCA UG AAG GC UUAUU...UCG-5'@LB@ | |@LB@ 54 21@LB@@LB@@LB@Energy -11.04 kcal/mol@LB@Hybridization Energy -22.9472 kcal/mol@LB@Unfolding Energy - mRNA 5.59747 kcal/mol@LB@Unfolding Energy - sRNA 6.31329 kcal/mol@LB@@LB@Position - mRNA 187 -- 218@LB@Position - sRNA 22 -- 53@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 30 -- 36@LB@ |
| 188 |
0.03165 |
0.5492 |
b3247 |
rng |
-10.28 |
0.085420 |
187 -- 220 |
10 -- 64 |
ribonuclease G |
|
_____________186_____________________________________________________221\n_____________|_______________________________________________________|\n5'-GUU...CGUGA_________A____________________________C_______U________AAACG...CGC-3'\n______________GAAA_AGGG_UAAAC________________AUGACGG___UGAAU___GUUAGU\n______________||||_||||_|||||________________|||||||___|:|||___||||:|\n______________CUUU_UCCC_AUUUG________________UACUGCC___AUUUA___CAAUUA\n3'-UUU...GCCAA____A____C_____UCUGUAAGUCUUUACU_______AUU_____UUU______CUACU...UCG-5'\n_____________|_______________________________________________________|\n_____________65______________________________________________________9\n |
201 -- 207 |
27 -- 33 |
-22.7807 kcal/mol |
6.16544 kcal/mol |
6.33995 kcal/mol |
186 221@LB@ | |@LB@5'-GUU...CGUGA A C U AAACG...CGC-3'@LB@ GAAA AGGG UAAAC AUGACGG UGAAU GUUAGU@LB@ |||| |||| ||||| ||||||| |:||| ||||:|@LB@ CUUU UCCC AUUUG UACUGCC AUUUA CAAUUA@LB@3'-UUU...GCCAA A C UCUGUAAGUCUUUACU AUU UUU CUACU...UCG-5'@LB@ | |@LB@ 65 9@LB@@LB@@LB@Energy -10.28 kcal/mol@LB@Hybridization Energy -22.7807 kcal/mol@LB@Unfolding Energy - mRNA 6.16544 kcal/mol@LB@Unfolding Energy - sRNA 6.33995 kcal/mol@LB@@LB@Position - mRNA 187 -- 220@LB@Position - sRNA 10 -- 64@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 27 -- 33@LB@ |
| 25 |
0.00149 |
0.1957 |
b4244 |
pyrI |
-16.22 |
0.003374 |
188 -- 229 |
11 -- 59 |
aspartate carbamoyltransferase regulatory subunit |
|
_____________187_________________________________________________230\n_____________|___________________________________________________|\n5'-UUC...CUGUA__________________________CAC___A________UGC_______AGCUA...UCA-3'\n______________AGGGG_AAAUAGA________GAUGA___ACG_UAAUAAAU___AGGUUGA\n______________|||||_|||:|||________:||||___|||_||||||||___|:|||:|\n______________UCCCC_UUUGUCU________UUACU___UGC_AUUAUUUA___UUCAAUU\n3'-UUU...CUUUA_____A_______GUAAGUCU_____UAC___C________U_________ACUAC...UCG-5'\n_____________|___________________________________________________|\n_____________60__________________________________________________10\n |
223 -- 229 |
11 -- 17 |
-28.8643 kcal/mol |
6.31236 kcal/mol |
6.33314 kcal/mol |
187 230@LB@ | |@LB@5'-UUC...CUGUA CAC A UGC AGCUA...UCA-3'@LB@ AGGGG AAAUAGA GAUGA ACG UAAUAAAU AGGUUGA@LB@ ||||| |||:||| :|||| ||| |||||||| |:|||:|@LB@ UCCCC UUUGUCU UUACU UGC AUUAUUUA UUCAAUU@LB@3'-UUU...CUUUA A GUAAGUCU UAC C U ACUAC...UCG-5'@LB@ | |@LB@ 60 10@LB@@LB@@LB@Energy -16.22 kcal/mol@LB@Hybridization Energy -28.8643 kcal/mol@LB@Unfolding Energy - mRNA 6.31236 kcal/mol@LB@Unfolding Energy - sRNA 6.33314 kcal/mol@LB@@LB@Position - mRNA 188 -- 229@LB@Position - sRNA 11 -- 59@LB@Position Seed - mRNA 223 -- 229@LB@Position Seed - sRNA 11 -- 17@LB@ |
| 35 |
0.003306 |
0.3101 |
b0551 |
quuD |
-13.48 |
0.016718 |
188 -- 210 |
3 -- 24 |
DLP12 prophage; putative antitermination protein |
|
_____________187_____________________211\n_____________|_______________________|\n5'-ACU...UUUUU_____GU_________C______UUCAG...GAU-3'\n______________GUGGA__AAGUUGAUG_GUGAUA\n______________:|::|__|||||:|||_:|||||\n______________UAUUU__UUCAAUUAC_UACUAU\n3'-UUU...GCCAU_____AU________________CG-5'\n_____________|_______________________|\n_____________25______________________2\n |
197 -- 203 |
9 -- 15 |
-17.2545 kcal/mol |
3.66311 kcal/mol |
0.108279 kcal/mol |
187 211@LB@ | |@LB@5'-ACU...UUUUU GU C UUCAG...GAU-3'@LB@ GUGGA AAGUUGAUG GUGAUA@LB@ :|::| |||||:||| :|||||@LB@ UAUUU UUCAAUUAC UACUAU@LB@3'-UUU...GCCAU AU CG-5'@LB@ | |@LB@ 25 2@LB@@LB@@LB@Energy -13.48 kcal/mol@LB@Hybridization Energy -17.2545 kcal/mol@LB@Unfolding Energy - mRNA 3.66311 kcal/mol@LB@Unfolding Energy - sRNA 0.108279 kcal/mol@LB@@LB@Position - mRNA 188 -- 210@LB@Position - sRNA 3 -- 24@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 9 -- 15@LB@ |
| 62 |
0.008588 |
0.4523 |
b1746 |
astD |
-15.44 |
0.005443 |
188 -- 231 |
17 -- 59 |
succinylglutamic semialdehyde dehydrogenase |
|
_____________187___________________________________________232\n_____________|_____________________________________________|\n5'-GCA...CGCAG___A_A__________GACUUU______UA_______C_______CGGGC...AUG-3'\n______________AGG_G_AAACAG_CAU______AUGGAU__ACGGUGA_UGGAUAA\n______________|||_|_||||||_|||______|||:||__|||||:|_|::||||\n______________UCC_C_UUUGUC_GUA______UACUUA__UGCCAUU_AUUUAUU\n3'-UUU...CUUUA___C_A______U___AGUCUU______C________________UCAAU...UCG-5'\n_____________|_____________________________________________|\n_____________60____________________________________________16\n |
217 -- 223 |
24 -- 30 |
-28.1653 kcal/mol |
6.40491 kcal/mol |
6.3229 kcal/mol |
187 232@LB@ | |@LB@5'-GCA...CGCAG A A GACUUU UA C CGGGC...AUG-3'@LB@ AGG G AAACAG CAU AUGGAU ACGGUGA UGGAUAA@LB@ ||| | |||||| ||| |||:|| |||||:| |::||||@LB@ UCC C UUUGUC GUA UACUUA UGCCAUU AUUUAUU@LB@3'-UUU...CUUUA C A U AGUCUU C UCAAU...UCG-5'@LB@ | |@LB@ 60 16@LB@@LB@@LB@Energy -15.44 kcal/mol@LB@Hybridization Energy -28.1653 kcal/mol@LB@Unfolding Energy - mRNA 6.40491 kcal/mol@LB@Unfolding Energy - sRNA 6.3229 kcal/mol@LB@@LB@Position - mRNA 188 -- 231@LB@Position - sRNA 17 -- 59@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 79 |
0.01117 |
0.4523 |
b1593 |
ynfK |
-13.04 |
0.021217 |
188 -- 210 |
1 -- 21 |
putative dethiobiotin synthetase |
|
_____________187_____________________211\n_____________|_______________________|\n5'-CAC...AUAAC________________CUGA___GUUUC...CGG-3'\n______________GGUGGAGUUAGUGAUG____AGC\n______________::|::|||||:|||||____|||\n______________UUAUUUCAAUUACUAC____UCG\n3'-UUU...AUUAU________________UA_____-5'\n_____________|______________________|\n_____________22_____________________1\n |
197 -- 203 |
6 -- 12 |
-19.4081 kcal/mol |
6.29658 kcal/mol |
0.0669945 kcal/mol |
187 211@LB@ | |@LB@5'-CAC...AUAAC CUGA GUUUC...CGG-3'@LB@ GGUGGAGUUAGUGAUG AGC@LB@ ::|::|||||:||||| |||@LB@ UUAUUUCAAUUACUAC UCG@LB@3'-UUU...AUUAU UA -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -13.04 kcal/mol@LB@Hybridization Energy -19.4081 kcal/mol@LB@Unfolding Energy - mRNA 6.29658 kcal/mol@LB@Unfolding Energy - sRNA 0.0669945 kcal/mol@LB@@LB@Position - mRNA 188 -- 210@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 6 -- 12@LB@ |
| 104 |
0.01633 |
0.5059 |
b3057 |
bacA |
-10.04 |
0.095309 |
188 -- 194 |
54 -- 60 |
undecaprenyl pyrophosphate phosphatase |
|
_____________187_____195\n_____________|_______|\n5'-UUC...UAAUU_______UUAUU...UUG-3'\n______________UAGGGGU\n______________|||||||\n______________AUCCCCA\n3'-UUU...ACUUU_______UUUGU...UCG-5'\n_____________|_______|\n_____________61______53\n |
188 -- 194 |
54 -- 60 |
-11.2865 kcal/mol |
1.18126 kcal/mol |
0.0661814 kcal/mol |
187 195@LB@ | |@LB@5'-UUC...UAAUU UUAUU...UUG-3'@LB@ UAGGGGU@LB@ |||||||@LB@ AUCCCCA@LB@3'-UUU...ACUUU UUUGU...UCG-5'@LB@ | |@LB@ 61 53@LB@@LB@@LB@Energy -10.04 kcal/mol@LB@Hybridization Energy -11.2865 kcal/mol@LB@Unfolding Energy - mRNA 1.18126 kcal/mol@LB@Unfolding Energy - sRNA 0.0661814 kcal/mol@LB@@LB@Position - mRNA 188 -- 194@LB@Position - sRNA 54 -- 60@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 54 -- 60@LB@ |
| 195 |
0.03271 |
0.5507 |
b3213 |
gltD |
-10.79 |
0.067022 |
188 -- 211 |
38 -- 59 |
glutamate synthase 4Fe-4S protein small subunit |
|
_____________187______________________212\n_____________|________________________|\n5'-AGC...CAGUA_______GC____AUGAG______UGUUU...AGC-3'\n______________AGGGGUA__AACA_____UCAGAA\n______________|||||||__||||_____||||||\n______________UCCCCAU__UUGU_____AGUCUU\n3'-UUU...CUUUA_____________CUGUA______UACUU...UCG-5'\n_____________|________________________|\n_____________60_______________________37\n |
188 -- 194 |
53 -- 59 |
-20.1632 kcal/mol |
3.12506 kcal/mol |
6.25108 kcal/mol |
187 212@LB@ | |@LB@5'-AGC...CAGUA GC AUGAG UGUUU...AGC-3'@LB@ AGGGGUA AACA UCAGAA@LB@ ||||||| |||| ||||||@LB@ UCCCCAU UUGU AGUCUU@LB@3'-UUU...CUUUA CUGUA UACUU...UCG-5'@LB@ | |@LB@ 60 37@LB@@LB@@LB@Energy -10.79 kcal/mol@LB@Hybridization Energy -20.1632 kcal/mol@LB@Unfolding Energy - mRNA 3.12506 kcal/mol@LB@Unfolding Energy - sRNA 6.25108 kcal/mol@LB@@LB@Position - mRNA 188 -- 211@LB@Position - sRNA 38 -- 59@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 53 -- 59@LB@ |
| 34 |
0.003196 |
0.3086 |
b0896 |
dmsC |
-10.70 |
0.070045 |
189 -- 235 |
4 -- 59 |
dimethyl sulfoxide reductase anaerobic subunit C |
|
_____________188_______________________________________________________236\n_____________|_________________________________________________________|\n5'-CUG...CCCGA___A____UG__________________________________CCGC_________CUUCA...AAG-3'\n______________AGG_GGUG___AGAUG___GGAAGUGGAUGGC____AUGAAUGG______UGAUGAU\n______________|||_|||:___|||::___:|||:||:|||:|____||:|||::______|||||||\n______________UCC_CCAU___UCUGU___UCUUUACUUACUG____UAUUUAUU______ACUACUA\n3'-UUU...CUUUA________UUG_____AAG_____________CCAU________UCAAUU_______UCG-5'\n_____________|_________________________________________________________|\n_____________60________________________________________________________3\n |
229 -- 235 |
4 -- 10 |
-34.4804 kcal/mol |
17.4476 kcal/mol |
6.33761 kcal/mol |
188 236@LB@ | |@LB@5'-CUG...CCCGA A UG CCGC CUUCA...AAG-3'@LB@ AGG GGUG AGAUG GGAAGUGGAUGGC AUGAAUGG UGAUGAU@LB@ ||| |||: |||:: :|||:||:|||:| ||:|||:: |||||||@LB@ UCC CCAU UCUGU UCUUUACUUACUG UAUUUAUU ACUACUA@LB@3'-UUU...CUUUA UUG AAG CCAU UCAAUU UCG-5'@LB@ | |@LB@ 60 3@LB@@LB@@LB@Energy -10.70 kcal/mol@LB@Hybridization Energy -34.4804 kcal/mol@LB@Unfolding Energy - mRNA 17.4476 kcal/mol@LB@Unfolding Energy - sRNA 6.33761 kcal/mol@LB@@LB@Position - mRNA 189 -- 235@LB@Position - sRNA 4 -- 59@LB@Position Seed - mRNA 229 -- 235@LB@Position Seed - sRNA 4 -- 10@LB@ |
