| 44 |
0.004782 |
0.3568 |
b3243 |
aaeR |
-11.65 |
0.043804 |
4 -- 44 |
1 -- 57 |
transcriptional regulator for aaeXAB operon |
|
_____________3_________________________________________________________45\n_____________|_________________________________________________________|\n________5'-AAC_________________UGU____CCU_____U_____G__________________AGGCG...UCA-3'\n______________GGG_AAACAGAC__UCA____UGA____UGGU_GUAAA_AGAG___________AGC\n______________|||_||||||||__|||____|||____:|||_:||||_|:||___________|||\n______________CCC_UUUGUCUG__AGU____ACU____GCCA_UAUUU_UUUC___________UCG\n3'-UUU...UUAUC___A________UA___CUUU___UACU____U_____A____AAUUACUACUA___-5'\n_____________|________________________________________________________|\n_____________58_______________________________________________________1\n |
8 -- 14 |
46 -- 52 |
-26.9604 kcal/mol |
8.9713 kcal/mol |
6.33758 kcal/mol |
3 45@LB@ | |@LB@ 5'-AAC UGU CCU U G AGGCG...UCA-3'@LB@ GGG AAACAGAC UCA UGA UGGU GUAAA AGAG AGC@LB@ ||| |||||||| ||| ||| :||| :|||| |:|| |||@LB@ CCC UUUGUCUG AGU ACU GCCA UAUUU UUUC UCG@LB@3'-UUU...UUAUC A UA CUUU UACU U A AAUUACUACUA -5'@LB@ | |@LB@ 58 1@LB@@LB@@LB@Energy -11.65 kcal/mol@LB@Hybridization Energy -26.9604 kcal/mol@LB@Unfolding Energy - mRNA 8.9713 kcal/mol@LB@Unfolding Energy - sRNA 6.33758 kcal/mol@LB@@LB@Position - mRNA 4 -- 44@LB@Position - sRNA 1 -- 57@LB@Position Seed - mRNA 8 -- 14@LB@Position Seed - sRNA 46 -- 52@LB@ |
| 152 |
0.02492 |
0.526 |
b3665 |
adeD |
-5.38 |
0.553104 |
121 -- 181 |
3 -- 52 |
cryptic adenine deaminase |
b4328 |
_____________120____________________________________________________________182\n_____________|______________________________________________________________|\n5'-ACG...ACAUU___________UUU_______CUCGC____UUUCUUUA__________UAAUCAAAU_____AAAUC...UUA-3'\n______________AAUGGAUAUUC___AAU_AAU_____GACG________UGAUAAAUAA_________UGAUA\n______________||::||:||||___|||_|||_____||||________|:||||||||_________|||||\n______________UUGUCUGUAAG___UUA_UUA_____CUGC________AUUAUUUAUU_________ACUAU\n3'-UUU...CCCAU___________UCU___C____________C_________________UCAAUUACU_____CG-5'\n_____________|______________________________________________________________|\n_____________53_____________________________________________________________2\n |
161 -- 167 |
17 -- 23 |
-19.4771 kcal/mol |
7.76071 kcal/mol |
6.33547 kcal/mol |
120 182@LB@ | |@LB@5'-ACG...ACAUU UUU CUCGC UUUCUUUA UAAUCAAAU AAAUC...UUA-3'@LB@ AAUGGAUAUUC AAU AAU GACG UGAUAAAUAA UGAUA@LB@ ||::||:|||| ||| ||| |||| |:|||||||| |||||@LB@ UUGUCUGUAAG UUA UUA CUGC AUUAUUUAUU ACUAU@LB@3'-UUU...CCCAU UCU C C UCAAUUACU CG-5'@LB@ | |@LB@ 53 2@LB@@LB@@LB@Energy -5.38 kcal/mol@LB@Hybridization Energy -19.4771 kcal/mol@LB@Unfolding Energy - mRNA 7.76071 kcal/mol@LB@Unfolding Energy - sRNA 6.33547 kcal/mol@LB@@LB@Position - mRNA 121 -- 181@LB@Position - sRNA 3 -- 52@LB@Position Seed - mRNA 161 -- 167@LB@Position Seed - sRNA 17 -- 23@LB@ |
| 182 |
0.03007 |
0.5424 |
b3131 |
agaR |
-10.52 |
0.076061 |
148 -- 177 |
28 -- 59 |
transcriptional repressor of the aga regulon |
|
_____________147______________________________178\n_____________|________________________________|\n5'-CAG...UAGAA___C__U________AAAC_____________AAAGU...AGG-3'\n______________AGG_GU_AAUAGGCA____GAAAUGAA__ACG\n______________|||_||_||:||:||____||||||||__|||\n______________UCC_CA_UUGUCUGU____CUUUACUU__UGC\n3'-UUU...CUUUA___C__U________AAGU________AC___CAUUA...UCG-5'\n_____________|________________________________|\n_____________60_______________________________27\n |
167 -- 173 |
34 -- 40 |
-23.0737 kcal/mol |
6.26419 kcal/mol |
6.28754 kcal/mol |
147 178@LB@ | |@LB@5'-CAG...UAGAA C U AAAC AAAGU...AGG-3'@LB@ AGG GU AAUAGGCA GAAAUGAA ACG@LB@ ||| || ||:||:|| |||||||| |||@LB@ UCC CA UUGUCUGU CUUUACUU UGC@LB@3'-UUU...CUUUA C U AAGU AC CAUUA...UCG-5'@LB@ | |@LB@ 60 27@LB@@LB@@LB@Energy -10.52 kcal/mol@LB@Hybridization Energy -23.0737 kcal/mol@LB@Unfolding Energy - mRNA 6.26419 kcal/mol@LB@Unfolding Energy - sRNA 6.28754 kcal/mol@LB@@LB@Position - mRNA 148 -- 177@LB@Position - sRNA 28 -- 59@LB@Position Seed - mRNA 167 -- 173@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 86 |
0.013 |
0.4962 |
b0451 |
amtB |
-9.48 |
0.122870 |
5 -- 23 |
1 -- 22 |
ammonium transporter |
|
_____________4______________________24\n_____________|______________________|\n_______5'-CCAA_______AAU____________GAUUG...CGU-3'\n______________AAGUAAA_____UGAUG_UGGC\n______________||:||||_____|||||_|:||\n______________UUUAUUU_____ACUAC_AUCG\n3'-UUU...CAUUA_______CAAUU_____U____-5'\n_____________|_____________________|\n_____________23____________________1\n |
5 -- 11 |
16 -- 22 |
-11.4865 kcal/mol |
1.90989 kcal/mol |
0.0989066 kcal/mol |
4 24@LB@ | |@LB@ 5'-CCAA AAU GAUUG...CGU-3'@LB@ AAGUAAA UGAUG UGGC@LB@ ||:|||| ||||| |:||@LB@ UUUAUUU ACUAC AUCG@LB@3'-UUU...CAUUA CAAUU U -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -9.48 kcal/mol@LB@Hybridization Energy -11.4865 kcal/mol@LB@Unfolding Energy - mRNA 1.90989 kcal/mol@LB@Unfolding Energy - sRNA 0.0989066 kcal/mol@LB@@LB@Position - mRNA 5 -- 23@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 5 -- 11@LB@Position Seed - sRNA 16 -- 22@LB@ |
| 139 |
0.0229 |
0.526 |
b3958 |
argC |
-10.25 |
0.086580 |
11 -- 36 |
23 -- 56 |
N-acetyl-gamma-glutamylphosphate reductase NAD(P)-binding |
|
_____________10___________________________________37\n_____________|____________________________________|\n5'-AUC...AGCGC_______CUC__________________________UUGUU...CUG-3'\n______________GGUAAAU___GAUA__________AAUGGCGGUAAU\n______________||||||:___||:|__________||||:|||||||\n______________CCAUUUG___CUGU__________UUACUGCCAUUA\n3'-UUU...UAUCC_______U______AAGUCUUUAC____________UUUAU...UCG-5'\n_____________|____________________________________|\n_____________57___________________________________22\n |
30 -- 36 |
23 -- 29 |
-21.8632 kcal/mol |
5.30467 kcal/mol |
6.31216 kcal/mol |
10 37@LB@ | |@LB@5'-AUC...AGCGC CUC UUGUU...CUG-3'@LB@ GGUAAAU GAUA AAUGGCGGUAAU@LB@ ||||||: ||:| ||||:|||||||@LB@ CCAUUUG CUGU UUACUGCCAUUA@LB@3'-UUU...UAUCC U AAGUCUUUAC UUUAU...UCG-5'@LB@ | |@LB@ 57 22@LB@@LB@@LB@Energy -10.25 kcal/mol@LB@Hybridization Energy -21.8632 kcal/mol@LB@Unfolding Energy - mRNA 5.30467 kcal/mol@LB@Unfolding Energy - sRNA 6.31216 kcal/mol@LB@@LB@Position - mRNA 11 -- 36@LB@Position - sRNA 23 -- 56@LB@Position Seed - mRNA 30 -- 36@LB@Position Seed - sRNA 23 -- 29@LB@ |
| 53 |
0.006355 |
0.3902 |
b2916 |
argP |
-17.11 |
0.001913 |
217 -- 267 |
1 -- 51 |
transcriptional regulator for arginine transport and DNA replication genes; replication initiation inhibitor |
|
_____________216____________________________________________________268\n_____________|______________________________________________________|\n5'-GGC...GGACU____A_____A____CAC_______________C_____CGAG_____UUG___GCGCG...CAG-3'\n______________ACAG_ACAUU_CAGG___UGGAUG_CGGUGAUA_GUGAA______GAU___AGC\n______________||||_|||||_|||:___||:|||_||||:|||_:|:||______|||___|||\n______________UGUC_UGUAA_GUCU___ACUUAC_GCCAUUAU_UAUUU______CUA___UCG\n3'-UUU...CCAUU_______________UU_______U________U_____CAAUUA___CUA___-5'\n_____________|_____________________________________________________|\n_____________52____________________________________________________1\n |
242 -- 248 |
22 -- 28 |
-33.3201 kcal/mol |
9.87503 kcal/mol |
6.33528 kcal/mol |
216 268@LB@ | |@LB@5'-GGC...GGACU A A CAC C CGAG UUG GCGCG...CAG-3'@LB@ ACAG ACAUU CAGG UGGAUG CGGUGAUA GUGAA GAU AGC@LB@ |||| ||||| |||: ||:||| ||||:||| :|:|| ||| |||@LB@ UGUC UGUAA GUCU ACUUAC GCCAUUAU UAUUU CUA UCG@LB@3'-UUU...CCAUU UU U U CAAUUA CUA -5'@LB@ | |@LB@ 52 1@LB@@LB@@LB@Energy -17.11 kcal/mol@LB@Hybridization Energy -33.3201 kcal/mol@LB@Unfolding Energy - mRNA 9.87503 kcal/mol@LB@Unfolding Energy - sRNA 6.33528 kcal/mol@LB@@LB@Position - mRNA 217 -- 267@LB@Position - sRNA 1 -- 51@LB@Position Seed - mRNA 242 -- 248@LB@Position Seed - sRNA 22 -- 28@LB@ |
| 95 |
0.01574 |
0.5059 |
b2714 |
ascG |
-10.13 |
0.091468 |
184 -- 220 |
14 -- 55 |
asc operon transcriptional repressor; prpBC operon repressor |
|
_____________183________________________________________221\n_____________|__________________________________________|\n5'-AAA...UGCGU_____G_____________AU_______AC____CUG_____GGCGA...AAG-3'\n______________GUAAA_GGAU_____GAAA__GAUGACG__GAUG___GAAGU\n______________|||||_:||:_____||||__:||||||__:||:___:||||\n______________CAUUU_UCUG_____CUUU__UUACUGC__UUAU___UUUCA\n3'-UUU...AUCCC_____G____UAAGU____AC_______CA____UUA_____AUUAC...UCG-5'\n_____________|__________________________________________|\n_____________56_________________________________________13\n |
200 -- 206 |
28 -- 34 |
-22.7561 kcal/mol |
6.30192 kcal/mol |
6.32604 kcal/mol |
183 221@LB@ | |@LB@5'-AAA...UGCGU G AU AC CUG GGCGA...AAG-3'@LB@ GUAAA GGAU GAAA GAUGACG GAUG GAAGU@LB@ ||||| :||: |||| :|||||| :||: :||||@LB@ CAUUU UCUG CUUU UUACUGC UUAU UUUCA@LB@3'-UUU...AUCCC G UAAGU AC CA UUA AUUAC...UCG-5'@LB@ | |@LB@ 56 13@LB@@LB@@LB@Energy -10.13 kcal/mol@LB@Hybridization Energy -22.7561 kcal/mol@LB@Unfolding Energy - mRNA 6.30192 kcal/mol@LB@Unfolding Energy - sRNA 6.32604 kcal/mol@LB@@LB@Position - mRNA 184 -- 220@LB@Position - sRNA 14 -- 55@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 28 -- 34@LB@ |
| 197 |
0.03325 |
0.554 |
b4139 |
aspA |
-12.92 |
0.022631 |
26 -- 66 |
25 -- 59 |
aspartate ammonia-lyase |
|
_____________25_________________________________________67\n_____________|__________________________________________|\n5'-GAU...AAUUA________AA__C____C__________UCCAG__U______GAAAU...ACU-3'\n______________AGGGGUAA__AC_GACA_UUA_AAGUGA_____AU_ACGGUA\n______________||||||||__||_||||_|:|_||:|||_____||_||||||\n______________UCCCCAUU__UG_CUGU_AGU_UUUACU_____UA_UGCCAU\n3'-UUU...CUUUA____________U____A___C_____________C______UAUUU...UCG-5'\n_____________|__________________________________________|\n_____________60_________________________________________24\n |
27 -- 33 |
52 -- 58 |
-28.0294 kcal/mol |
8.80617 kcal/mol |
6.29893 kcal/mol |
25 67@LB@ | |@LB@5'-GAU...AAUUA AA C C UCCAG U GAAAU...ACU-3'@LB@ AGGGGUAA AC GACA UUA AAGUGA AU ACGGUA@LB@ |||||||| || |||| |:| ||:||| || ||||||@LB@ UCCCCAUU UG CUGU AGU UUUACU UA UGCCAU@LB@3'-UUU...CUUUA U A C C UAUUU...UCG-5'@LB@ | |@LB@ 60 24@LB@@LB@@LB@Energy -12.92 kcal/mol@LB@Hybridization Energy -28.0294 kcal/mol@LB@Unfolding Energy - mRNA 8.80617 kcal/mol@LB@Unfolding Energy - sRNA 6.29893 kcal/mol@LB@@LB@Position - mRNA 26 -- 66@LB@Position - sRNA 25 -- 59@LB@Position Seed - mRNA 27 -- 33@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 62 |
0.008588 |
0.4523 |
b1746 |
astD |
-15.44 |
0.005443 |
188 -- 231 |
17 -- 59 |
succinylglutamic semialdehyde dehydrogenase |
|
_____________187___________________________________________232\n_____________|_____________________________________________|\n5'-GCA...CGCAG___A_A__________GACUUU______UA_______C_______CGGGC...AUG-3'\n______________AGG_G_AAACAG_CAU______AUGGAU__ACGGUGA_UGGAUAA\n______________|||_|_||||||_|||______|||:||__|||||:|_|::||||\n______________UCC_C_UUUGUC_GUA______UACUUA__UGCCAUU_AUUUAUU\n3'-UUU...CUUUA___C_A______U___AGUCUU______C________________UCAAU...UCG-5'\n_____________|_____________________________________________|\n_____________60____________________________________________16\n |
217 -- 223 |
24 -- 30 |
-28.1653 kcal/mol |
6.40491 kcal/mol |
6.3229 kcal/mol |
187 232@LB@ | |@LB@5'-GCA...CGCAG A A GACUUU UA C CGGGC...AUG-3'@LB@ AGG G AAACAG CAU AUGGAU ACGGUGA UGGAUAA@LB@ ||| | |||||| ||| |||:|| |||||:| |::||||@LB@ UCC C UUUGUC GUA UACUUA UGCCAUU AUUUAUU@LB@3'-UUU...CUUUA C A U AGUCUU C UCAAU...UCG-5'@LB@ | |@LB@ 60 16@LB@@LB@@LB@Energy -15.44 kcal/mol@LB@Hybridization Energy -28.1653 kcal/mol@LB@Unfolding Energy - mRNA 6.40491 kcal/mol@LB@Unfolding Energy - sRNA 6.3229 kcal/mol@LB@@LB@Position - mRNA 188 -- 231@LB@Position - sRNA 17 -- 59@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 158 |
0.0258 |
0.526 |
b3738 |
atpB |
-11.34 |
0.051140 |
75 -- 89 |
1 -- 15 |
F0 sector of membrane-bound ATP synthase subunit a |
|
_____________74______________90\n_____________|_______________|\n5'-CAU...UUGGU____C__________GUUGG...ACC-3'\n______________GUUA_UGGUGGUGGC\n______________||||_||:||:|:||\n______________CAAU_ACUACUAUCG\n3'-UUU...UAUUU____U__________-5'\n_____________|______________|\n_____________16_____________1\n |
83 -- 89 |
1 -- 7 |
-16.9836 kcal/mol |
5.59496 kcal/mol |
0.0474282 kcal/mol |
74 90@LB@ | |@LB@5'-CAU...UUGGU C GUUGG...ACC-3'@LB@ GUUA UGGUGGUGGC@LB@ |||| ||:||:|:||@LB@ CAAU ACUACUAUCG@LB@3'-UUU...UAUUU U -5'@LB@ | |@LB@ 16 1@LB@@LB@@LB@Energy -11.34 kcal/mol@LB@Hybridization Energy -16.9836 kcal/mol@LB@Unfolding Energy - mRNA 5.59496 kcal/mol@LB@Unfolding Energy - sRNA 0.0474282 kcal/mol@LB@@LB@Position - mRNA 75 -- 89@LB@Position - sRNA 1 -- 15@LB@Position Seed - mRNA 83 -- 89@LB@Position Seed - sRNA 1 -- 7@LB@ |
