| 158 |
0.0258 |
0.526 |
b3738 |
atpB |
-11.34 |
0.051140 |
75 -- 89 |
1 -- 15 |
F0 sector of membrane-bound ATP synthase subunit a |
|
_____________74______________90\n_____________|_______________|\n5'-CAU...UUGGU____C__________GUUGG...ACC-3'\n______________GUUA_UGGUGGUGGC\n______________||||_||:||:|:||\n______________CAAU_ACUACUAUCG\n3'-UUU...UAUUU____U__________-5'\n_____________|______________|\n_____________16_____________1\n |
83 -- 89 |
1 -- 7 |
-16.9836 kcal/mol |
5.59496 kcal/mol |
0.0474282 kcal/mol |
74 90@LB@ | |@LB@5'-CAU...UUGGU C GUUGG...ACC-3'@LB@ GUUA UGGUGGUGGC@LB@ |||| ||:||:|:||@LB@ CAAU ACUACUAUCG@LB@3'-UUU...UAUUU U -5'@LB@ | |@LB@ 16 1@LB@@LB@@LB@Energy -11.34 kcal/mol@LB@Hybridization Energy -16.9836 kcal/mol@LB@Unfolding Energy - mRNA 5.59496 kcal/mol@LB@Unfolding Energy - sRNA 0.0474282 kcal/mol@LB@@LB@Position - mRNA 75 -- 89@LB@Position - sRNA 1 -- 15@LB@Position Seed - mRNA 83 -- 89@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 177 |
0.02886 |
0.5353 |
b2206 |
napA |
-7.95 |
0.233634 |
77 -- 89 |
1 -- 13 |
nitrate reductase periplasmic large subunit |
|
_____________76____________90\n_____________|_____________|\n5'-GAC...GAUUG_________A___AGAAG...UUG-3'\n______________UGGUGGUGG_AGC\n______________|::||:||:_|||\n______________AUUACUACU_UCG\n3'-UUU...UUUCA_________A___-5'\n_____________|____________|\n_____________14___________1\n |
79 -- 85 |
5 -- 11 |
-12.9311 kcal/mol |
4.9403 kcal/mol |
0.0446954 kcal/mol |
76 90@LB@ | |@LB@5'-GAC...GAUUG A AGAAG...UUG-3'@LB@ UGGUGGUGG AGC@LB@ |::||:||: |||@LB@ AUUACUACU UCG@LB@3'-UUU...UUUCA A -5'@LB@ | |@LB@ 14 1@LB@@LB@@LB@Energy -7.95 kcal/mol@LB@Hybridization Energy -12.9311 kcal/mol@LB@Unfolding Energy - mRNA 4.9403 kcal/mol@LB@Unfolding Energy - sRNA 0.0446954 kcal/mol@LB@@LB@Position - mRNA 77 -- 89@LB@Position - sRNA 1 -- 13@LB@Position Seed - mRNA 79 -- 85@LB@Position Seed - sRNA 5 -- 11@LB@ |
| 33 |
0.003163 |
0.3086 |
b4372 |
holD |
-10.86 |
0.064637 |
82 -- 98 |
44 -- 58 |
DNA polymerase III psi subunit |
|
_____________81________________99\n_____________|_________________|\n5'-AGG...UUGCC_______AU________GGAAU...UCC-3'\n______________GGGGUAA__GCAGACAU\n______________|||||||__:|||||||\n______________CCCCAUU__UGUCUGUA\n3'-UUU...UUUAU_________________AGUCU...UCG-5'\n_____________|_________________|\n_____________59________________43\n |
92 -- 98 |
44 -- 50 |
-21.4924 kcal/mol |
4.96784 kcal/mol |
5.66232 kcal/mol |
81 99@LB@ | |@LB@5'-AGG...UUGCC AU GGAAU...UCC-3'@LB@ GGGGUAA GCAGACAU@LB@ ||||||| :|||||||@LB@ CCCCAUU UGUCUGUA@LB@3'-UUU...UUUAU AGUCU...UCG-5'@LB@ | |@LB@ 59 43@LB@@LB@@LB@Energy -10.86 kcal/mol@LB@Hybridization Energy -21.4924 kcal/mol@LB@Unfolding Energy - mRNA 4.96784 kcal/mol@LB@Unfolding Energy - sRNA 5.66232 kcal/mol@LB@@LB@Position - mRNA 82 -- 98@LB@Position - sRNA 44 -- 58@LB@Position Seed - mRNA 92 -- 98@LB@Position Seed - sRNA 44 -- 50@LB@ |
| 117 |
0.01855 |
0.5155 |
b3011 |
yqhD |
-12.43 |
0.029448 |
82 -- 109 |
34 -- 64 |
aldehyde reductase NADPH-dependent |
|
_____________81________________________________110\n_____________|_________________________________|\n5'-GUU...CUGGA________CA____________GG_________GCAUU...UGA-3'\n______________GAAAUAGG_______AGACAUU__CAGAAAUGA\n______________||||||||_______|||||||__|||||||||\n______________CUUUAUCC_______UCUGUAA__GUCUUUACU\n3'-UUU...GCCAA________CCAUUUG__________________UACUG...UCG-5'\n_____________|_________________________________|\n_____________65________________________________33\n |
83 -- 89 |
57 -- 63 |
-24.9555 kcal/mol |
6.2587 kcal/mol |
6.27071 kcal/mol |
81 110@LB@ | |@LB@5'-GUU...CUGGA CA GG GCAUU...UGA-3'@LB@ GAAAUAGG AGACAUU CAGAAAUGA@LB@ |||||||| ||||||| |||||||||@LB@ CUUUAUCC UCUGUAA GUCUUUACU@LB@3'-UUU...GCCAA CCAUUUG UACUG...UCG-5'@LB@ | |@LB@ 65 33@LB@@LB@@LB@Energy -12.43 kcal/mol@LB@Hybridization Energy -24.9555 kcal/mol@LB@Unfolding Energy - mRNA 6.2587 kcal/mol@LB@Unfolding Energy - sRNA 6.27071 kcal/mol@LB@@LB@Position - mRNA 82 -- 109@LB@Position - sRNA 34 -- 64@LB@Position Seed - mRNA 83 -- 89@LB@Position Seed - sRNA 57 -- 63@LB@ |
| 105 |
0.01645 |
0.5059 |
b0454 |
ybaZ |
-8.45 |
0.190978 |
84 -- 93 |
47 -- 56 |
excision repair protein alkyltransferase-like protein ATL |
|
_____________83_________94\n_____________|__________|\n5'-AGG...GACCU__________GUAGC...UUC-3'\n______________GGUAAACAGA\n______________||||||||||\n______________CCAUUUGUCU\n3'-UUU...UAUCC__________GUAAG...UCG-5'\n_____________|__________|\n_____________57_________46\n |
87 -- 93 |
47 -- 53 |
-13.2019 kcal/mol |
2.68818 kcal/mol |
2.06629 kcal/mol |
83 94@LB@ | |@LB@5'-AGG...GACCU GUAGC...UUC-3'@LB@ GGUAAACAGA@LB@ ||||||||||@LB@ CCAUUUGUCU@LB@3'-UUU...UAUCC GUAAG...UCG-5'@LB@ | |@LB@ 57 46@LB@@LB@@LB@Energy -8.45 kcal/mol@LB@Hybridization Energy -13.2019 kcal/mol@LB@Unfolding Energy - mRNA 2.68818 kcal/mol@LB@Unfolding Energy - sRNA 2.06629 kcal/mol@LB@@LB@Position - mRNA 84 -- 93@LB@Position - sRNA 47 -- 56@LB@Position Seed - mRNA 87 -- 93@LB@Position Seed - sRNA 47 -- 53@LB@ |
| 167 |
0.02708 |
0.531 |
b3705 |
yidC |
-10.20 |
0.088356 |
85 -- 115 |
24 -- 58 |
membrane protein insertase |
|
_____________84____________________________________116\n_____________|_____________________________________|\n5'-CGC...GGUUU__A____UAAA_____GU_________U_________AACGC...CCC-3'\n______________GG_GUGA____AGGCA________UGG_UGACGGUGA\n______________||_||:|____||:||________||:_|||||||:|\n______________CC_CAUU____UCUGU________ACU_ACUGCCAUU\n3'-UUU...UUUAU__C____UG_______AAGUCUUU___U_________AUUUA...UCG-5'\n_____________|_____________________________________|\n_____________59____________________________________23\n |
109 -- 115 |
24 -- 30 |
-23.9536 kcal/mol |
7.45063 kcal/mol |
6.30019 kcal/mol |
84 116@LB@ | |@LB@5'-CGC...GGUUU A UAAA GU U AACGC...CCC-3'@LB@ GG GUGA AGGCA UGG UGACGGUGA@LB@ || ||:| ||:|| ||: |||||||:|@LB@ CC CAUU UCUGU ACU ACUGCCAUU@LB@3'-UUU...UUUAU C UG AAGUCUUU U AUUUA...UCG-5'@LB@ | |@LB@ 59 23@LB@@LB@@LB@Energy -10.20 kcal/mol@LB@Hybridization Energy -23.9536 kcal/mol@LB@Unfolding Energy - mRNA 7.45063 kcal/mol@LB@Unfolding Energy - sRNA 6.30019 kcal/mol@LB@@LB@Position - mRNA 85 -- 115@LB@Position - sRNA 24 -- 58@LB@Position Seed - mRNA 109 -- 115@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 175 |
0.0283 |
0.531 |
b2048 |
cpsG |
-16.42 |
0.002969 |
89 -- 138 |
17 -- 58 |
phosphomannomutase |
|
_____________88___________________________________________________139\n_____________|____________________________________________________|\n5'-GGG...CGGAC___U_______UC_________C________CGAAACC______________CGACA...GCG-3'\n______________GGG_GUAAACG__GCA_UCAGG_AAUGAAUG_______GCGGU_GUAAAUAA\n______________|||_||||||:__:||_||||:_||||||||_______:||||_:|||||||\n______________CCC_CAUUUGU__UGU_AGUCU_UUACUUAC_______UGCCA_UAUUUAUU\n3'-UUU...UUUAU___________C____A__________________________U________UCAAU...UCG-5'\n_____________|____________________________________________________|\n_____________59___________________________________________________16\n |
132 -- 138 |
17 -- 23 |
-37.1596 kcal/mol |
14.4139 kcal/mol |
6.32276 kcal/mol |
88 139@LB@ | |@LB@5'-GGG...CGGAC U UC C CGAAACC CGACA...GCG-3'@LB@ GGG GUAAACG GCA UCAGG AAUGAAUG GCGGU GUAAAUAA@LB@ ||| ||||||: :|| ||||: |||||||| :|||| :|||||||@LB@ CCC CAUUUGU UGU AGUCU UUACUUAC UGCCA UAUUUAUU@LB@3'-UUU...UUUAU C A U UCAAU...UCG-5'@LB@ | |@LB@ 59 16@LB@@LB@@LB@Energy -16.42 kcal/mol@LB@Hybridization Energy -37.1596 kcal/mol@LB@Unfolding Energy - mRNA 14.4139 kcal/mol@LB@Unfolding Energy - sRNA 6.32276 kcal/mol@LB@@LB@Position - mRNA 89 -- 138@LB@Position - sRNA 17 -- 58@LB@Position Seed - mRNA 132 -- 138@LB@Position Seed - sRNA 17 -- 23@LB@ |
| 153 |
0.02513 |
0.526 |
b2745 |
truD |
-9.91 |
0.100940 |
94 -- 116 |
1 -- 24 |
tRNA(Glu) pseudouridine(13) synthase |
|
_____________93_______________________117\n_____________|________________________|\n5'-AAC...GCCAU________U_____C_____A___CACUA...UGG-3'\n______________AUGGAUGA_GUUAA__GUGA_AGC\n______________||::||:|_|||||__:|||_|||\n______________UAUUUAUU_CAAUU__UACU_UCG\n3'-UUU...GCCAU________U_____AC____A___-5'\n_____________|_______________________|\n_____________25______________________1\n |
95 -- 101 |
17 -- 23 |
-14.0384 kcal/mol |
4.01581 kcal/mol |
0.108605 kcal/mol |
93 117@LB@ | |@LB@5'-AAC...GCCAU U C A CACUA...UGG-3'@LB@ AUGGAUGA GUUAA GUGA AGC@LB@ ||::||:| ||||| :||| |||@LB@ UAUUUAUU CAAUU UACU UCG@LB@3'-UUU...GCCAU U AC A -5'@LB@ | |@LB@ 25 1@LB@@LB@@LB@Energy -9.91 kcal/mol@LB@Hybridization Energy -14.0384 kcal/mol@LB@Unfolding Energy - mRNA 4.01581 kcal/mol@LB@Unfolding Energy - sRNA 0.108605 kcal/mol@LB@@LB@Position - mRNA 94 -- 116@LB@Position - sRNA 1 -- 24@LB@Position Seed - mRNA 95 -- 101@LB@Position Seed - sRNA 17 -- 23@LB@ |
| 106 |
0.01645 |
0.5059 |
b2416 |
ptsI |
-13.93 |
0.013056 |
96 -- 143 |
1 -- 59 |
PEP-protein phosphotransferase of PTS system (enzyme I) |
|
_____________95__________________________________________________________144\n_____________|___________________________________________________________|\n5'-GUG...GCAGA___CGA_________AG_________________UGAACAUCU______AC________GGAAC...CCG-3'\n______________AGG_______AGACG__CAGAAA______GCGGU_________GGUUAA___UGAUGGC\n______________|||_______||||:__||||||______:||||_________:|||||___||||:||\n______________UCC_______UCUGU__GUCUUU______UGCCA_________UCAAUU___ACUAUCG\n3'-UUU...CUUUA___CCAUUUG_____AA______ACUUAC_____UUAUUUAUU______ACU_______-5'\n_____________|__________________________________________________________|\n_____________60_________________________________________________________1\n |
137 -- 143 |
1 -- 7 |
-30.8595 kcal/mol |
10.5928 kcal/mol |
6.33764 kcal/mol |
95 144@LB@ | |@LB@5'-GUG...GCAGA CGA AG UGAACAUCU AC GGAAC...CCG-3'@LB@ AGG AGACG CAGAAA GCGGU GGUUAA UGAUGGC@LB@ ||| ||||: |||||| :|||| :||||| ||||:||@LB@ UCC UCUGU GUCUUU UGCCA UCAAUU ACUAUCG@LB@3'-UUU...CUUUA CCAUUUG AA ACUUAC UUAUUUAUU ACU -5'@LB@ | |@LB@ 60 1@LB@@LB@@LB@Energy -13.93 kcal/mol@LB@Hybridization Energy -30.8595 kcal/mol@LB@Unfolding Energy - mRNA 10.5928 kcal/mol@LB@Unfolding Energy - sRNA 6.33764 kcal/mol@LB@@LB@Position - mRNA 96 -- 143@LB@Position - sRNA 1 -- 59@LB@Position Seed - mRNA 137 -- 143@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 130 |
0.02079 |
0.5217 |
b3455 |
livG |
-10.98 |
0.060940 |
96 -- 122 |
4 -- 29 |
branched-chain amino acid ABC transporter ATPase |
|
_____________95__________________________123\n_____________|___________________________|\n5'-AUG...AUGCU_______UU_____U_C__________CUGGC...UCG-3'\n______________CGGUGGU__GAUGG_G_UGAUGAUGAU\n______________||||::|__:||::_|_|:||||||||\n______________GCCAUUA__UUAUU_C_AUUACUACUA\n3'-UUU...UUACU_______U______U_A__________UCG-5'\n_____________|___________________________|\n_____________30__________________________3\n |
116 -- 122 |
4 -- 10 |
-20.0623 kcal/mol |
6.95142 kcal/mol |
2.12698 kcal/mol |
95 123@LB@ | |@LB@5'-AUG...AUGCU UU U C CUGGC...UCG-3'@LB@ CGGUGGU GAUGG G UGAUGAUGAU@LB@ ||||::| :||:: | |:||||||||@LB@ GCCAUUA UUAUU C AUUACUACUA@LB@3'-UUU...UUACU U U A UCG-5'@LB@ | |@LB@ 30 3@LB@@LB@@LB@Energy -10.98 kcal/mol@LB@Hybridization Energy -20.0623 kcal/mol@LB@Unfolding Energy - mRNA 6.95142 kcal/mol@LB@Unfolding Energy - sRNA 2.12698 kcal/mol@LB@@LB@Position - mRNA 96 -- 122@LB@Position - sRNA 4 -- 29@LB@Position Seed - mRNA 116 -- 122@LB@Position Seed - sRNA 4 -- 10@LB@ |
