| 101 |
0.01605 |
0.5059 |
b3360 |
pabA |
-8.89 |
0.158482 |
100 -- 107 |
55 -- 62 |
aminodeoxychorismate synthase subunit II |
|
_____________99_______108\n_____________|________|\n5'-GCG...GGGGC________AUCUC...CGU-3'\n______________AAUGGGGG\n______________|||:||||\n______________UUAUCCCC\n3'-UUU...CAACU________AUUUG...UCG-5'\n_____________|________|\n_____________63_______54\n |
101 -- 107 |
55 -- 61 |
-11.7531 kcal/mol |
2.8331 kcal/mol |
0.0270923 kcal/mol |
99 108@LB@ | |@LB@5'-GCG...GGGGC AUCUC...CGU-3'@LB@ AAUGGGGG@LB@ |||:||||@LB@ UUAUCCCC@LB@3'-UUU...CAACU AUUUG...UCG-5'@LB@ | |@LB@ 63 54@LB@@LB@@LB@Energy -8.89 kcal/mol@LB@Hybridization Energy -11.7531 kcal/mol@LB@Unfolding Energy - mRNA 2.8331 kcal/mol@LB@Unfolding Energy - sRNA 0.0270923 kcal/mol@LB@@LB@Position - mRNA 100 -- 107@LB@Position - sRNA 55 -- 62@LB@Position Seed - mRNA 101 -- 107@LB@Position Seed - sRNA 55 -- 61@LB@ |
| 196 |
0.0332 |
0.554 |
b0128 |
yadH |
-11.13 |
0.056665 |
104 -- 121 |
39 -- 55 |
putative ABC transporter permease |
|
_____________103________________122\n_____________|__________________|\n5'-UUA...GUUAA_______G__________UAUUA...UCA-3'\n______________GUGAGCA_GGCAUUCAGG\n______________||:|:||_|:|||||||:\n______________CAUUUGU_CUGUAAGUCU\n3'-UUU...AUCCC__________________UUACU...UCG-5'\n_____________|__________________|\n_____________56_________________38\n |
114 -- 120 |
40 -- 46 |
-20.6932 kcal/mol |
3.311 kcal/mol |
6.24918 kcal/mol |
103 122@LB@ | |@LB@5'-UUA...GUUAA G UAUUA...UCA-3'@LB@ GUGAGCA GGCAUUCAGG@LB@ ||:|:|| |:|||||||:@LB@ CAUUUGU CUGUAAGUCU@LB@3'-UUU...AUCCC UUACU...UCG-5'@LB@ | |@LB@ 56 38@LB@@LB@@LB@Energy -11.13 kcal/mol@LB@Hybridization Energy -20.6932 kcal/mol@LB@Unfolding Energy - mRNA 3.311 kcal/mol@LB@Unfolding Energy - sRNA 6.24918 kcal/mol@LB@@LB@Position - mRNA 104 -- 121@LB@Position - sRNA 39 -- 55@LB@Position Seed - mRNA 114 -- 120@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 81 |
0.01129 |
0.4523 |
b1718 |
infC |
-12.35 |
0.030679 |
105 -- 150 |
1 -- 56 |
translation initiation factor IF-3 |
|
_____________104______________________________________________________151\n_____________|________________________________________________________|\n5'-UUG...GCCGU___________C________GCAUG__________________GAUC_________UGCAA...AGC-3'\n______________GGUAA__AGAC___UGGGAA_____GACG____UAAAUGAAGU____GA_GA_AGC\n______________|||||__||||___::|:||_____||||____|||||:||||____||_||_|||\n______________CCAUU__UCUG___GUCUUU_____CUGC____AUUUAUUUCA____CU_CU_UCG\n3'-UUU...UAUCC_____UG____UAA______ACUUA____CAUU__________AUUA__A__A___-5'\n_____________|_______________________________________________________|\n_____________57______________________________________________________1\n |
133 -- 139 |
14 -- 20 |
-27.0853 kcal/mol |
8.40012 kcal/mol |
6.33758 kcal/mol |
104 151@LB@ | |@LB@5'-UUG...GCCGU C GCAUG GAUC UGCAA...AGC-3'@LB@ GGUAA AGAC UGGGAA GACG UAAAUGAAGU GA GA AGC@LB@ ||||| |||| ::|:|| |||| |||||:|||| || || |||@LB@ CCAUU UCUG GUCUUU CUGC AUUUAUUUCA CU CU UCG@LB@3'-UUU...UAUCC UG UAA ACUUA CAUU AUUA A A -5'@LB@ | |@LB@ 57 1@LB@@LB@@LB@Energy -12.35 kcal/mol@LB@Hybridization Energy -27.0853 kcal/mol@LB@Unfolding Energy - mRNA 8.40012 kcal/mol@LB@Unfolding Energy - sRNA 6.33758 kcal/mol@LB@@LB@Position - mRNA 105 -- 150@LB@Position - sRNA 1 -- 56@LB@Position Seed - mRNA 133 -- 139@LB@Position Seed - sRNA 14 -- 20@LB@ |
| 64 |
0.008913 |
0.4523 |
b4231 |
yjfF |
-11.33 |
0.051476 |
106 -- 140 |
1 -- 41 |
putative sugar ABC transporter permease |
|
_____________105_______________________________________141\n_____________|_________________________________________|\n5'-CGG...CCGCC_________CCA_______________C_____________UUUGC...GAG-3'\n______________AGAGAUGAA____GGUGGUGA___AAG__GGUGGUGGU_GC\n______________|||:|||||____|||::|:|___|||__::||:||:|_||\n______________UCUUUACUU____CCAUUAUU___UUC__UUACUACUA_CG\n3'-UUU...GUAAG_________ACUG________UAU___AA_________U__-5'\n_____________|________________________________________|\n_____________42_______________________________________1\n |
132 -- 138 |
4 -- 10 |
-27.205 kcal/mol |
9.83395 kcal/mol |
6.043 kcal/mol |
105 141@LB@ | |@LB@5'-CGG...CCGCC CCA C UUUGC...GAG-3'@LB@ AGAGAUGAA GGUGGUGA AAG GGUGGUGGU GC@LB@ |||:||||| |||::|:| ||| ::||:||:| ||@LB@ UCUUUACUU CCAUUAUU UUC UUACUACUA CG@LB@3'-UUU...GUAAG ACUG UAU AA U -5'@LB@ | |@LB@ 42 1@LB@@LB@@LB@Energy -11.33 kcal/mol@LB@Hybridization Energy -27.205 kcal/mol@LB@Unfolding Energy - mRNA 9.83395 kcal/mol@LB@Unfolding Energy - sRNA 6.043 kcal/mol@LB@@LB@Position - mRNA 106 -- 140@LB@Position - sRNA 1 -- 41@LB@Position Seed - mRNA 132 -- 138@LB@Position Seed - sRNA 4 -- 10@LB@ |
| 146 |
0.02455 |
0.526 |
b0491 |
fetB |
-8.60 |
0.179526 |
114 -- 156 |
14 -- 57 |
iron export ABC transporter permease; peroxide resistance protein |
|
_____________113_______________________________________________157\n_____________|_________________________________________________|\n5'-GCC...GCUGU______C___C____AAGAC_____U___CAU_________________GAUUA...AGA-3'\n______________GGGUGA_ACA_GAUA_____GAAAU_AAU___GCGG______AUAAAGU\n______________||||:|_|||_||:|_____|||||_|||___:|||______|||||||\n______________CCCAUU_UGU_CUGU_____CUUUA_UUA___UGCC______UAUUUCA\n3'-UUU...UUAUC_______________AAGU______C___C______AUUAUU_______AUUAC...UCG-5'\n_____________|_________________________________________________|\n_____________58________________________________________________13\n |
150 -- 156 |
14 -- 20 |
-22.3302 kcal/mol |
7.40722 kcal/mol |
6.32606 kcal/mol |
113 157@LB@ | |@LB@5'-GCC...GCUGU C C AAGAC U CAU GAUUA...AGA-3'@LB@ GGGUGA ACA GAUA GAAAU AAU GCGG AUAAAGU@LB@ ||||:| ||| ||:| ||||| ||| :||| |||||||@LB@ CCCAUU UGU CUGU CUUUA UUA UGCC UAUUUCA@LB@3'-UUU...UUAUC AAGU C C AUUAUU AUUAC...UCG-5'@LB@ | |@LB@ 58 13@LB@@LB@@LB@Energy -8.60 kcal/mol@LB@Hybridization Energy -22.3302 kcal/mol@LB@Unfolding Energy - mRNA 7.40722 kcal/mol@LB@Unfolding Energy - sRNA 6.32606 kcal/mol@LB@@LB@Position - mRNA 114 -- 156@LB@Position - sRNA 14 -- 57@LB@Position Seed - mRNA 150 -- 156@LB@Position Seed - sRNA 14 -- 20@LB@ |
| 42 |
0.004307 |
0.3367 |
b4051 |
qorA |
-12.29 |
0.031673 |
118 -- 140 |
3 -- 26 |
quinone oxidoreductase NADPH-dependent |
|
_____________117______________________141\n_____________|________________________|\n5'-CGC...UGCCA_______________CC_______AAGAA...UCG-3'\n______________UAGUGAAUGGAGUUA__GA_GAUA\n______________||:|:|||::|||||__||_||||\n______________AUUAUUUAUUUCAAU__CU_CUAU\n3'-UUU...CUGCC_______________UA__A____CG-5'\n_____________|________________________|\n_____________27_______________________2\n |
126 -- 132 |
12 -- 18 |
-16.4059 kcal/mol |
3.53962 kcal/mol |
0.580109 kcal/mol |
117 141@LB@ | |@LB@5'-CGC...UGCCA CC AAGAA...UCG-3'@LB@ UAGUGAAUGGAGUUA GA GAUA@LB@ ||:|:|||::||||| || ||||@LB@ AUUAUUUAUUUCAAU CU CUAU@LB@3'-UUU...CUGCC UA A CG-5'@LB@ | |@LB@ 27 2@LB@@LB@@LB@Energy -12.29 kcal/mol@LB@Hybridization Energy -16.4059 kcal/mol@LB@Unfolding Energy - mRNA 3.53962 kcal/mol@LB@Unfolding Energy - sRNA 0.580109 kcal/mol@LB@@LB@Position - mRNA 118 -- 140@LB@Position - sRNA 3 -- 26@LB@Position Seed - mRNA 126 -- 132@LB@Position Seed - sRNA 12 -- 18@LB@ |
| 152 |
0.02492 |
0.526 |
b3665 |
adeD |
-5.38 |
0.553104 |
121 -- 181 |
3 -- 52 |
cryptic adenine deaminase |
b4328 |
_____________120____________________________________________________________182\n_____________|______________________________________________________________|\n5'-ACG...ACAUU___________UUU_______CUCGC____UUUCUUUA__________UAAUCAAAU_____AAAUC...UUA-3'\n______________AAUGGAUAUUC___AAU_AAU_____GACG________UGAUAAAUAA_________UGAUA\n______________||::||:||||___|||_|||_____||||________|:||||||||_________|||||\n______________UUGUCUGUAAG___UUA_UUA_____CUGC________AUUAUUUAUU_________ACUAU\n3'-UUU...CCCAU___________UCU___C____________C_________________UCAAUUACU_____CG-5'\n_____________|______________________________________________________________|\n_____________53_____________________________________________________________2\n |
161 -- 167 |
17 -- 23 |
-19.4771 kcal/mol |
7.76071 kcal/mol |
6.33547 kcal/mol |
120 182@LB@ | |@LB@5'-ACG...ACAUU UUU CUCGC UUUCUUUA UAAUCAAAU AAAUC...UUA-3'@LB@ AAUGGAUAUUC AAU AAU GACG UGAUAAAUAA UGAUA@LB@ ||::||:|||| ||| ||| |||| |:|||||||| |||||@LB@ UUGUCUGUAAG UUA UUA CUGC AUUAUUUAUU ACUAU@LB@3'-UUU...CCCAU UCU C C UCAAUUACU CG-5'@LB@ | |@LB@ 53 2@LB@@LB@@LB@Energy -5.38 kcal/mol@LB@Hybridization Energy -19.4771 kcal/mol@LB@Unfolding Energy - mRNA 7.76071 kcal/mol@LB@Unfolding Energy - sRNA 6.33547 kcal/mol@LB@@LB@Position - mRNA 121 -- 181@LB@Position - sRNA 3 -- 52@LB@Position Seed - mRNA 161 -- 167@LB@Position Seed - sRNA 17 -- 23@LB@ |
| 164 |
0.02654 |
0.526 |
b3993 |
thiE |
-11.45 |
0.048376 |
123 -- 151 |
37 -- 65 |
thiamine phosphate synthase (thiamine phosphate pyrophosphorylase) |
|
_____________122____________________________152\n_____________|______________________________|\n5'-CAC...ACUAU_________AAU__________G_______ACUUC...UAC-3'\n______________UGAAAUGGG____GGCGGAUAU_UCGGAGA\n______________||||||:||____::|:||:||_||:||:|\n______________ACUUUAUCC____UUGUCUGUA_AGUCUUU\n3'-UUU...GGCCA_________CCAU_________________ACUUA...UCG-5'\n_____________|______________________________|\n_____________66_____________________________36\n |
125 -- 131 |
57 -- 63 |
-26.5084 kcal/mol |
7.89908 kcal/mol |
7.1561 kcal/mol |
122 152@LB@ | |@LB@5'-CAC...ACUAU AAU G ACUUC...UAC-3'@LB@ UGAAAUGGG GGCGGAUAU UCGGAGA@LB@ ||||||:|| ::|:||:|| ||:||:|@LB@ ACUUUAUCC UUGUCUGUA AGUCUUU@LB@3'-UUU...GGCCA CCAU ACUUA...UCG-5'@LB@ | |@LB@ 66 36@LB@@LB@@LB@Energy -11.45 kcal/mol@LB@Hybridization Energy -26.5084 kcal/mol@LB@Unfolding Energy - mRNA 7.89908 kcal/mol@LB@Unfolding Energy - sRNA 7.1561 kcal/mol@LB@@LB@Position - mRNA 123 -- 151@LB@Position - sRNA 37 -- 65@LB@Position Seed - mRNA 125 -- 131@LB@Position Seed - sRNA 57 -- 63@LB@ |
| 39 |
0.003905 |
0.3287 |
b3541 |
dppD |
-12.54 |
0.027771 |
124 -- 154 |
26 -- 56 |
dipeptide/heme ABC transporter ATPas |
|
_____________123_______________________________155\n_____________|_________________________________|\n5'-UUU...CUGAC_______U________ACCU_____________CUGCG...GCG-3'\n______________GGU__GC_GGCAUUUA____GAUGGGUGACGGU\n______________|||__:|_|:||||:|____:|||::|||||||\n______________CCA__UG_CUGUAAGU____UUACUUACUGCCA\n3'-UUU...UAUCC___UU__U________CU_______________UUAUU...UCG-5'\n_____________|_________________________________|\n_____________57________________________________25\n |
148 -- 154 |
26 -- 32 |
-28.6535 kcal/mol |
9.81942 kcal/mol |
6.29593 kcal/mol |
123 155@LB@ | |@LB@5'-UUU...CUGAC U ACCU CUGCG...GCG-3'@LB@ GGU GC GGCAUUUA GAUGGGUGACGGU@LB@ ||| :| |:||||:| :|||::|||||||@LB@ CCA UG CUGUAAGU UUACUUACUGCCA@LB@3'-UUU...UAUCC UU U CU UUAUU...UCG-5'@LB@ | |@LB@ 57 25@LB@@LB@@LB@Energy -12.54 kcal/mol@LB@Hybridization Energy -28.6535 kcal/mol@LB@Unfolding Energy - mRNA 9.81942 kcal/mol@LB@Unfolding Energy - sRNA 6.29593 kcal/mol@LB@@LB@Position - mRNA 124 -- 154@LB@Position - sRNA 26 -- 56@LB@Position Seed - mRNA 148 -- 154@LB@Position Seed - sRNA 26 -- 32@LB@ |
| 191 |
0.03238 |
0.5507 |
b0445 |
ybaE |
-8.08 |
0.221556 |
124 -- 136 |
4 -- 16 |
putative ABC transporter periplasmic binding protein |
|
_____________123___________137\n_____________|_____________|\n5'-CGU...GACAC_____________UGAGU...GUU-3'\n______________GGUUAAUGGUGAU\n______________:|||||||:||||\n______________UCAAUUACUACUA\n3'-UUU...UUAUU_____________UCG-5'\n_____________|_____________|\n_____________17____________3\n |
130 -- 136 |
4 -- 10 |
-14.6304 kcal/mol |
6.50117 kcal/mol |
0.0488422 kcal/mol |
123 137@LB@ | |@LB@5'-CGU...GACAC UGAGU...GUU-3'@LB@ GGUUAAUGGUGAU@LB@ :|||||||:||||@LB@ UCAAUUACUACUA@LB@3'-UUU...UUAUU UCG-5'@LB@ | |@LB@ 17 3@LB@@LB@@LB@Energy -8.08 kcal/mol@LB@Hybridization Energy -14.6304 kcal/mol@LB@Unfolding Energy - mRNA 6.50117 kcal/mol@LB@Unfolding Energy - sRNA 0.0488422 kcal/mol@LB@@LB@Position - mRNA 124 -- 136@LB@Position - sRNA 4 -- 16@LB@Position Seed - mRNA 130 -- 136@LB@Position Seed - sRNA 4 -- 10@LB@ |
