185 |
0.03096 |
0.5492 |
b1686 |
menI |
-12.09 |
0.035132 |
263 -- 300 |
22 -- 58 |
1 4-dihydroxy-2-naphthoyl-CoA hydrolase |
|
_____________262____________________________________300\n_____________|______________________________________|\n5'-GGC...AUGGU_____UCCU_________CUU_____CAUAU________-3'\n______________GGGGU____GGAUAUUCG____UGAA_____UGGUGAUG\n______________|||||____:||:||||:____||||_____:|||:||:\n______________CCCCA____UCUGUAAGU____ACUU_____GCCAUUAU\n3'-UUU...UUUAU_____UUUG_________CUUU____ACU__________UUAUU...UCG-5'\n_____________|_______________________________________|\n_____________59______________________________________21\n |
294 -- 300 |
22 -- 28 |
-26.9755 kcal/mol |
8.57608 kcal/mol |
6.31389 kcal/mol |
262 300@LB@ | |@LB@5'-GGC...AUGGU UCCU CUU CAUAU -3'@LB@ GGGGU GGAUAUUCG UGAA UGGUGAUG@LB@ ||||| :||:||||: |||| :|||:||:@LB@ CCCCA UCUGUAAGU ACUU GCCAUUAU@LB@3'-UUU...UUUAU UUUG CUUU ACU UUAUU...UCG-5'@LB@ | |@LB@ 59 21@LB@@LB@@LB@Energy -12.09 kcal/mol@LB@Hybridization Energy -26.9755 kcal/mol@LB@Unfolding Energy - mRNA 8.57608 kcal/mol@LB@Unfolding Energy - sRNA 6.31389 kcal/mol@LB@@LB@Position - mRNA 263 -- 300@LB@Position - sRNA 22 -- 58@LB@Position Seed - mRNA 294 -- 300@LB@Position Seed - sRNA 22 -- 28@LB@ |
151 |
0.02491 |
0.526 |
b3575 |
yiaK |
-7.81 |
0.245984 |
13 -- 22 |
1 -- 10 |
2 3-diketo-L-gulonate reductase NADH-dependent |
|
_____________12_________23\n_____________|__________|\n5'-UUU...CGUCC__________GCAAA...UCG-3'\n______________UGAUGGUAGC\n______________|||||:||||\n______________ACUACUAUCG\n3'-UUU...CAAUU__________-5'\n_____________|_________|\n_____________11________1\n |
16 -- 22 |
1 -- 7 |
-14.2362 kcal/mol |
6.39652 kcal/mol |
0.0255427 kcal/mol |
12 23@LB@ | |@LB@5'-UUU...CGUCC GCAAA...UCG-3'@LB@ UGAUGGUAGC@LB@ |||||:||||@LB@ ACUACUAUCG@LB@3'-UUU...CAAUU -5'@LB@ | |@LB@ 11 1@LB@@LB@@LB@Energy -7.81 kcal/mol@LB@Hybridization Energy -14.2362 kcal/mol@LB@Unfolding Energy - mRNA 6.39652 kcal/mol@LB@Unfolding Energy - sRNA 0.0255427 kcal/mol@LB@@LB@Position - mRNA 13 -- 22@LB@Position - sRNA 1 -- 10@LB@Position Seed - mRNA 16 -- 22@LB@Position Seed - sRNA 1 -- 7@LB@ |
121 |
0.01924 |
0.5155 |
b0074 |
leuA |
-11.43 |
0.049038 |
243 -- 261 |
39 -- 56 |
2-isopropylmalate synthase |
|
_____________242_________________262\n_____________|___________________|\n5'-CAU...GCGAC______________A____CAAGC...UGG-3'\n______________GGUGAACAGGCGUU_CAGG\n______________|||:|||||:|:||_|||:\n______________CCAUUUGUCUGUAA_GUCU\n3'-UUU...UAUCC___________________UUACU...UCG-5'\n_____________|___________________|\n_____________57__________________38\n |
247 -- 253 |
46 -- 52 |
-24.0317 kcal/mol |
6.35652 kcal/mol |
6.24929 kcal/mol |
242 262@LB@ | |@LB@5'-CAU...GCGAC A CAAGC...UGG-3'@LB@ GGUGAACAGGCGUU CAGG@LB@ |||:|||||:|:|| |||:@LB@ CCAUUUGUCUGUAA GUCU@LB@3'-UUU...UAUCC UUACU...UCG-5'@LB@ | |@LB@ 57 38@LB@@LB@@LB@Energy -11.43 kcal/mol@LB@Hybridization Energy -24.0317 kcal/mol@LB@Unfolding Energy - mRNA 6.35652 kcal/mol@LB@Unfolding Energy - sRNA 6.24929 kcal/mol@LB@@LB@Position - mRNA 243 -- 261@LB@Position - sRNA 39 -- 56@LB@Position Seed - mRNA 247 -- 253@LB@Position Seed - sRNA 46 -- 52@LB@ |
89 |
0.01433 |
0.5059 |
b0636 |
rlmH |
-12.18 |
0.033475 |
189 -- 207 |
1 -- 19 |
23S rRNA m(3)Psi1915 pseudouridine methyltransferase SAM-dependent |
|
_____________188__________________208\n_____________|____________________|\n5'-CGG...AACUC___________C________UGCAA...UCG-3'\n______________UGGAGUUAAUG_GUGA_AGC\n______________|::||||||||_:|||_|||\n______________AUUUCAAUUAC_UACU_UCG\n3'-UUU...UAUUU________________A___-5'\n_____________|___________________|\n_____________20__________________1\n |
193 -- 199 |
9 -- 15 |
-16.4949 kcal/mol |
4.25175 kcal/mol |
0.0638423 kcal/mol |
188 208@LB@ | |@LB@5'-CGG...AACUC C UGCAA...UCG-3'@LB@ UGGAGUUAAUG GUGA AGC@LB@ |::|||||||| :||| |||@LB@ AUUUCAAUUAC UACU UCG@LB@3'-UUU...UAUUU A -5'@LB@ | |@LB@ 20 1@LB@@LB@@LB@Energy -12.18 kcal/mol@LB@Hybridization Energy -16.4949 kcal/mol@LB@Unfolding Energy - mRNA 4.25175 kcal/mol@LB@Unfolding Energy - sRNA 0.0638423 kcal/mol@LB@@LB@Position - mRNA 189 -- 207@LB@Position - sRNA 1 -- 19@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 9 -- 15@LB@ |
50 |
0.005695 |
0.3739 |
b1086 |
rluC |
-13.13 |
0.020232 |
139 -- 168 |
28 -- 55 |
23S rRNA pseudouridine(955 2504 2580) synthase |
|
_____________138____________________________169\n_____________|______________________________|\n5'-UCC...CAAAA_______UAA____AG_A____________CGAAU...UAC-3'\n______________GUAAAUA___GCAU__A_AAAUGAGUGGCG\n______________|||||:|___:|||__|_||||||:||:||\n______________CAUUUGU___UGUA__U_UUUACUUACUGC\n3'-UUU...AUCCC_______C______AG_C____________CAUUA...UCG-5'\n_____________|______________________________|\n_____________56_____________________________27\n |
161 -- 167 |
29 -- 35 |
-21.8911 kcal/mol |
2.47099 kcal/mol |
6.28725 kcal/mol |
138 169@LB@ | |@LB@5'-UCC...CAAAA UAA AG A CGAAU...UAC-3'@LB@ GUAAAUA GCAU A AAAUGAGUGGCG@LB@ |||||:| :||| | ||||||:||:||@LB@ CAUUUGU UGUA U UUUACUUACUGC@LB@3'-UUU...AUCCC C AG C CAUUA...UCG-5'@LB@ | |@LB@ 56 27@LB@@LB@@LB@Energy -13.13 kcal/mol@LB@Hybridization Energy -21.8911 kcal/mol@LB@Unfolding Energy - mRNA 2.47099 kcal/mol@LB@Unfolding Energy - sRNA 6.28725 kcal/mol@LB@@LB@Position - mRNA 139 -- 168@LB@Position - sRNA 28 -- 55@LB@Position Seed - mRNA 161 -- 167@LB@Position Seed - sRNA 29 -- 35@LB@ |
43 |
0.004693 |
0.3568 |
b1395 |
paaH |
-8.91 |
0.157263 |
246 -- 258 |
49 -- 61 |
3-hydroxyadipyl-CoA dehydrogenase NAD+-dependent |
|
_____________245___________259\n_____________|_____________|\n5'-GGC...GCACC_______C_____UUGCU...UGU-3'\n______________AUGGGGG_AGGCA\n______________||:||||_|::||\n______________UAUCCCC_UUUGU\n3'-UUU...AACUU_______A_____CUGUA...UCG-5'\n_____________|_____________|\n_____________62____________48\n |
246 -- 252 |
55 -- 61 |
-14.1165 kcal/mol |
4.46726 kcal/mol |
0.738192 kcal/mol |
245 259@LB@ | |@LB@5'-GGC...GCACC C UUGCU...UGU-3'@LB@ AUGGGGG AGGCA@LB@ ||:|||| |::||@LB@ UAUCCCC UUUGU@LB@3'-UUU...AACUU A CUGUA...UCG-5'@LB@ | |@LB@ 62 48@LB@@LB@@LB@Energy -8.91 kcal/mol@LB@Hybridization Energy -14.1165 kcal/mol@LB@Unfolding Energy - mRNA 4.46726 kcal/mol@LB@Unfolding Energy - sRNA 0.738192 kcal/mol@LB@@LB@Position - mRNA 246 -- 258@LB@Position - sRNA 49 -- 61@LB@Position Seed - mRNA 246 -- 252@LB@Position Seed - sRNA 55 -- 61@LB@ |
160 |
0.02589 |
0.526 |
b3297 |
rpsK |
-10.33 |
0.083340 |
178 -- 193 |
52 -- 64 |
30S ribosomal subunit protein S11 |
|
_____________177______________194\n_____________|________________|\n5'-CGA...AUCAA______AUC_______UUGAA...CUA-3'\n______________GAAAUA___GGGGUGA\n______________||||||___|||||:|\n______________CUUUAU___CCCCAUU\n3'-UUU...GCCAA________________UGUCU...UCG-5'\n_____________|________________|\n_____________65_______________51\n |
187 -- 193 |
52 -- 58 |
-13.1856 kcal/mol |
2.77978 kcal/mol |
0.0778991 kcal/mol |
177 194@LB@ | |@LB@5'-CGA...AUCAA AUC UUGAA...CUA-3'@LB@ GAAAUA GGGGUGA@LB@ |||||| |||||:|@LB@ CUUUAU CCCCAUU@LB@3'-UUU...GCCAA UGUCU...UCG-5'@LB@ | |@LB@ 65 51@LB@@LB@@LB@Energy -10.33 kcal/mol@LB@Hybridization Energy -13.1856 kcal/mol@LB@Unfolding Energy - mRNA 2.77978 kcal/mol@LB@Unfolding Energy - sRNA 0.0778991 kcal/mol@LB@@LB@Position - mRNA 178 -- 193@LB@Position - sRNA 52 -- 64@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 52 -- 58@LB@ |
102 |
0.01618 |
0.5059 |
b3306 |
rpsH |
-10.04 |
0.095208 |
179 -- 210 |
1 -- 36 |
30S ribosomal subunit protein S8 |
|
_____________178____________________________________211\n_____________|______________________________________|\n5'-AGC...CCAAU_____C________________ACA_______GCAU__AAGAU...AAG-3'\n______________UGAAU_ACGG____GAGUAAAG_____GAUGA____GC\n______________|||||_||||____:|:|||||_____|||||____||\n______________ACUUA_UGCC____UUUAUUUC_____CUACU____CG\n3'-UUU...UCUUU_____C____AUUA________AAUUA_____AU____-5'\n_____________|_____________________________________|\n_____________37____________________________________1\n |
190 -- 196 |
15 -- 21 |
-20.3749 kcal/mol |
4.57112 kcal/mol |
5.76239 kcal/mol |
178 211@LB@ | |@LB@5'-AGC...CCAAU C ACA GCAU AAGAU...AAG-3'@LB@ UGAAU ACGG GAGUAAAG GAUGA GC@LB@ ||||| |||| :|:||||| ||||| ||@LB@ ACUUA UGCC UUUAUUUC CUACU CG@LB@3'-UUU...UCUUU C AUUA AAUUA AU -5'@LB@ | |@LB@ 37 1@LB@@LB@@LB@Energy -10.04 kcal/mol@LB@Hybridization Energy -20.3749 kcal/mol@LB@Unfolding Energy - mRNA 4.57112 kcal/mol@LB@Unfolding Energy - sRNA 5.76239 kcal/mol@LB@@LB@Position - mRNA 179 -- 210@LB@Position - sRNA 1 -- 36@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 15 -- 21@LB@ |
113 |
0.01802 |
0.5155 |
b3910 |
yiiM |
-13.90 |
0.013248 |
191 -- 239 |
40 -- 92 |
6-N-hydroxylaminopurine resistance protein |
|
_____________190______________________________________________________240\n_____________|________________________________________________________|\n5'-UAA...GUGGA________A_____________________U_________C_______AGA_____GCUUA...UGC-3'\n______________GAGGGAAC__GAUGCGA__UAUCCGGUUGA_GUA____UA_ACAGGCA___UUCAG\n______________:|:::|||__:||||||__:||||||||||_:||____||_||||:||___|||||\n______________UUUUUUUG__UUACGCU__GUAGGCCAACU_UAU____AU_UGUCUGU___AAGUC\n__________3'-U________GC_______CC___________U___CCCC__U_______________UUUAC...UCG-5'\n_____________|________________________________________________________|\n_____________93_______________________________________________________39\n |
225 -- 231 |
45 -- 51 |
-43.4237 kcal/mol |
10.1845 kcal/mol |
19.3361 kcal/mol |
190 240@LB@ | |@LB@5'-UAA...GUGGA A U C AGA GCUUA...UGC-3'@LB@ GAGGGAAC GAUGCGA UAUCCGGUUGA GUA UA ACAGGCA UUCAG@LB@ :|:::||| :|||||| :|||||||||| :|| || ||||:|| |||||@LB@ UUUUUUUG UUACGCU GUAGGCCAACU UAU AU UGUCUGU AAGUC@LB@ 3'-U GC CC U CCCC U UUUAC...UCG-5'@LB@ | |@LB@ 93 39@LB@@LB@@LB@Energy -13.90 kcal/mol@LB@Hybridization Energy -43.4237 kcal/mol@LB@Unfolding Energy - mRNA 10.1845 kcal/mol@LB@Unfolding Energy - sRNA 19.3361 kcal/mol@LB@@LB@Position - mRNA 191 -- 239@LB@Position - sRNA 40 -- 92@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 45 -- 51@LB@ |
55 |
0.006796 |
0.4056 |
b3192 |
mlaC |
-12.17 |
0.033659 |
167 -- 226 |
1 -- 57 |
ABC transporter maintaining OM lipid asymmetry periplasmic binding protein |
|
_____________166_______________________________________________________________227\n_____________|_________________________________________________________________|\n5'-GGA...CCUGU_____C______AAUAAU____________CC____C_____UU____C_U___________C__UUUGC...AGG-3'\n______________GGGUA_AAC_GA______UUCAGGA__GAA__GACG___AUG__UAAA_G_UUAAUGAUGGU_GC\n______________|||||_|||_||______|||||:|__|||__||||___||:__||||_|_|||||||||:|_||\n______________CCCAU_UUG_CU______AAGUCUU__CUU__CUGC___UAU__AUUU_C_AAUUACUACUA_CG\n3'-UUU...UUAUC_________U__GU___________UA___A_____CAU___UU__________________U__-5'\n_____________|________________________________________________________________|\n_____________58_______________________________________________________________1\n |
217 -- 223 |
4 -- 10 |
-32.157 kcal/mol |
13.6506 kcal/mol |
6.33758 kcal/mol |
166 227@LB@ | |@LB@5'-GGA...CCUGU C AAUAAU CC C UU C U C UUUGC...AGG-3'@LB@ GGGUA AAC GA UUCAGGA GAA GACG AUG UAAA G UUAAUGAUGGU GC@LB@ ||||| ||| || |||||:| ||| |||| ||: |||| | |||||||||:| ||@LB@ CCCAU UUG CU AAGUCUU CUU CUGC UAU AUUU C AAUUACUACUA CG@LB@3'-UUU...UUAUC U GU UA A CAU UU U -5'@LB@ | |@LB@ 58 1@LB@@LB@@LB@Energy -12.17 kcal/mol@LB@Hybridization Energy -32.157 kcal/mol@LB@Unfolding Energy - mRNA 13.6506 kcal/mol@LB@Unfolding Energy - sRNA 6.33758 kcal/mol@LB@@LB@Position - mRNA 167 -- 226@LB@Position - sRNA 1 -- 57@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 4 -- 10@LB@ |