| 87 |
0.01323 |
0.4992 |
b1951 |
rcsA |
-11.40 |
0.049597 |
149 -- 196 |
25 -- 65 |
transcriptional regulator of colanic acid capsular biosynthesis |
|
_____________148______________________________________________197\n_____________|________________________________________________|\n5'-GUU...CAUGA_______UUCA______G___AUUAU____ACGCAU_______G____UGCCA...UUG-3'\n______________UGAAAUA____GGUAAG_GGA_____CGUU______UGAGUGA_GGUA\n______________|||||||____|||||:_:||_____|:||______|||:|||_||||\n______________ACUUUAU____CCAUUU_UCU_____GUAA______ACUUACU_CCAU\n3'-UUU...GGCCA_______CC________G____________GUCUUU_______G____UAUUU...UCG-5'\n_____________|________________________________________________|\n_____________66_______________________________________________24\n |
149 -- 155 |
59 -- 65 |
-29.5865 kcal/mol |
10.9819 kcal/mol |
7.2015 kcal/mol |
148 197@LB@ | |@LB@5'-GUU...CAUGA UUCA G AUUAU ACGCAU G UGCCA...UUG-3'@LB@ UGAAAUA GGUAAG GGA CGUU UGAGUGA GGUA@LB@ ||||||| |||||: :|| |:|| |||:||| ||||@LB@ ACUUUAU CCAUUU UCU GUAA ACUUACU CCAU@LB@3'-UUU...GGCCA CC G GUCUUU G UAUUU...UCG-5'@LB@ | |@LB@ 66 24@LB@@LB@@LB@Energy -11.40 kcal/mol@LB@Hybridization Energy -29.5865 kcal/mol@LB@Unfolding Energy - mRNA 10.9819 kcal/mol@LB@Unfolding Energy - sRNA 7.2015 kcal/mol@LB@@LB@Position - mRNA 149 -- 196@LB@Position - sRNA 25 -- 65@LB@Position Seed - mRNA 149 -- 155@LB@Position Seed - sRNA 59 -- 65@LB@ |
| 19 |
0.0008973 |
0.1482 |
b3964 |
yijD |
-17.08 |
0.001951 |
152 -- 223 |
2 -- 55 |
DUF1422 family inner membrane protein |
|
_____________151______________________________________________________________________224\n_____________|________________________________________________________________________|\n5'-ACU...UCGCC______A___GAAAACCGCAAU_____CG_______UGAAG____A________AC___CA___CAA_____AGGUA...UGC-3'\n______________GUGAAC_AGA____________UAUUC__GGAAAUG_____GACG_GUAAUGAA__AAG__AAU___GAUAG\n______________||:|||_|||____________:||||__:||||||_____||||_|||||:||__|||__|||___|||||\n______________CAUUUG_UCU____________GUAAG__UCUUUAC_____CUGC_CAUUAUUU__UUC__UUA___CUAUC\n3'-UUU...AUCCC____________________________________UUA_______________AU___AA___CUA_____G-5'\n_____________|________________________________________________________________________|\n_____________56_______________________________________________________________________1\n |
199 -- 205 |
20 -- 26 |
-31.4266 kcal/mol |
8.00944 kcal/mol |
6.33752 kcal/mol |
151 224@LB@ | |@LB@5'-ACU...UCGCC A GAAAACCGCAAU CG UGAAG A AC CA CAA AGGUA...UGC-3'@LB@ GUGAAC AGA UAUUC GGAAAUG GACG GUAAUGAA AAG AAU GAUAG@LB@ ||:||| ||| :|||| :|||||| |||| |||||:|| ||| ||| |||||@LB@ CAUUUG UCU GUAAG UCUUUAC CUGC CAUUAUUU UUC UUA CUAUC@LB@3'-UUU...AUCCC UUA AU AA CUA G-5'@LB@ | |@LB@ 56 1@LB@@LB@@LB@Energy -17.08 kcal/mol@LB@Hybridization Energy -31.4266 kcal/mol@LB@Unfolding Energy - mRNA 8.00944 kcal/mol@LB@Unfolding Energy - sRNA 6.33752 kcal/mol@LB@@LB@Position - mRNA 152 -- 223@LB@Position - sRNA 2 -- 55@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 20 -- 26@LB@ |
| 23 |
0.001279 |
0.1825 |
b0199 |
metN |
-18.57 |
0.000714 |
152 -- 205 |
7 -- 50 |
DL-methionine transporter subunit |
|
_____________151_______________________________________________________206\n_____________|_________________________________________________________|\n5'-CGC...CGUUU________________CCACGACUAACUU_______A__________UC________AAAAC...UUU-3'\n______________CAGGCAUUC_GAGAUG_____________AAUGACG_UAAUAAAUAA____AAUGAU\n______________|||:|||||_||:|||_____________|||||||_||||||||||____||||||\n______________GUCUGUAAG_CUUUAC_____________UUACUGC_AUUAUUUAUU____UUACUA\n3'-UUU...CAUUU_________U__________________________C__________UCAA______CUAUCG-5'\n_____________|_________________________________________________________|\n_____________51________________________________________________________6\n |
191 -- 197 |
17 -- 23 |
-35.1892 kcal/mol |
10.2873 kcal/mol |
6.33206 kcal/mol |
151 206@LB@ | |@LB@5'-CGC...CGUUU CCACGACUAACUU A UC AAAAC...UUU-3'@LB@ CAGGCAUUC GAGAUG AAUGACG UAAUAAAUAA AAUGAU@LB@ |||:||||| ||:||| ||||||| |||||||||| ||||||@LB@ GUCUGUAAG CUUUAC UUACUGC AUUAUUUAUU UUACUA@LB@3'-UUU...CAUUU U C UCAA CUAUCG-5'@LB@ | |@LB@ 51 6@LB@@LB@@LB@Energy -18.57 kcal/mol@LB@Hybridization Energy -35.1892 kcal/mol@LB@Unfolding Energy - mRNA 10.2873 kcal/mol@LB@Unfolding Energy - sRNA 6.33206 kcal/mol@LB@@LB@Position - mRNA 152 -- 205@LB@Position - sRNA 7 -- 50@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 17 -- 23@LB@ |
| 31 |
0.00291 |
0.3081 |
b1205 |
ychH |
-11.03 |
0.059536 |
152 -- 163 |
53 -- 64 |
DUF2583 family putative inner membrane protein |
|
_____________151__________164\n_____________|____________|\n5'-CAA...CAUAA____G_______UUCCC...UAC-3'\n______________GGAA_AGGGGUA\n______________|:||_|||||||\n______________CUUU_UCCCCAU\n3'-UUU...GCCAA____A_______UUGUC...UCG-5'\n_____________|____________|\n_____________65___________52\n |
157 -- 163 |
53 -- 59 |
-13.5677 kcal/mol |
2.46117 kcal/mol |
0.0747267 kcal/mol |
151 164@LB@ | |@LB@5'-CAA...CAUAA G UUCCC...UAC-3'@LB@ GGAA AGGGGUA@LB@ |:|| |||||||@LB@ CUUU UCCCCAU@LB@3'-UUU...GCCAA A UUGUC...UCG-5'@LB@ | |@LB@ 65 52@LB@@LB@@LB@Energy -11.03 kcal/mol@LB@Hybridization Energy -13.5677 kcal/mol@LB@Unfolding Energy - mRNA 2.46117 kcal/mol@LB@Unfolding Energy - sRNA 0.0747267 kcal/mol@LB@@LB@Position - mRNA 152 -- 163@LB@Position - sRNA 53 -- 64@LB@Position Seed - mRNA 157 -- 163@LB@Position Seed - sRNA 53 -- 59@LB@ |
| 47 |
0.005156 |
0.3601 |
b2614 |
grpE |
-12.03 |
0.036099 |
152 -- 179 |
1 -- 26 |
heat shock protein |
|
_____________151__________________________180\n_____________|____________________________|\n5'-GAG...CCCCA_______C________CGA_____AU__GAAAA...CUG-3'\n______________UAAUAAG_GAAGUUAG___GAUGA__GC\n______________||||||:_:||||||:___|||||__||\n______________AUUAUUU_UUUCAAUU___CUACU__CG\n3'-UUU...CUGCC_______A________A_______AU__-5'\n_____________|___________________________|\n_____________27__________________________1\n |
161 -- 167 |
11 -- 17 |
-17.6467 kcal/mol |
5.03361 kcal/mol |
0.580494 kcal/mol |
151 180@LB@ | |@LB@5'-GAG...CCCCA C CGA AU GAAAA...CUG-3'@LB@ UAAUAAG GAAGUUAG GAUGA GC@LB@ ||||||: :||||||: ||||| ||@LB@ AUUAUUU UUUCAAUU CUACU CG@LB@3'-UUU...CUGCC A A AU -5'@LB@ | |@LB@ 27 1@LB@@LB@@LB@Energy -12.03 kcal/mol@LB@Hybridization Energy -17.6467 kcal/mol@LB@Unfolding Energy - mRNA 5.03361 kcal/mol@LB@Unfolding Energy - sRNA 0.580494 kcal/mol@LB@@LB@Position - mRNA 152 -- 179@LB@Position - sRNA 1 -- 26@LB@Position Seed - mRNA 161 -- 167@LB@Position Seed - sRNA 11 -- 17@LB@ |
| 83 |
0.0117 |
0.4626 |
b1071 |
flgM |
-8.58 |
0.180603 |
153 -- 179 |
1 -- 25 |
anti-sigma factor for FliA (sigma 28) |
|
_____________152_________________________180\n_____________|___________________________|\n5'-CCA...UUGCC__________CAACAC_____AAA___GCCCU...CAA-3'\n______________GAUAAAUAAG______AUGAU___AGC\n______________:||||||||:______|||||___|||\n______________UUAUUUAUUU______UACUA___UCG\n3'-UUU...UGCCA__________CAAU_______CUA___-5'\n_____________|__________________________|\n_____________26_________________________1\n |
156 -- 162 |
16 -- 22 |
-10.1551 kcal/mol |
1.46038 kcal/mol |
0.112205 kcal/mol |
152 180@LB@ | |@LB@5'-CCA...UUGCC CAACAC AAA GCCCU...CAA-3'@LB@ GAUAAAUAAG AUGAU AGC@LB@ :||||||||: ||||| |||@LB@ UUAUUUAUUU UACUA UCG@LB@3'-UUU...UGCCA CAAU CUA -5'@LB@ | |@LB@ 26 1@LB@@LB@@LB@Energy -8.58 kcal/mol@LB@Hybridization Energy -10.1551 kcal/mol@LB@Unfolding Energy - mRNA 1.46038 kcal/mol@LB@Unfolding Energy - sRNA 0.112205 kcal/mol@LB@@LB@Position - mRNA 153 -- 179@LB@Position - sRNA 1 -- 25@LB@Position Seed - mRNA 156 -- 162@LB@Position Seed - sRNA 16 -- 22@LB@ |
| 111 |
0.01748 |
0.5155 |
b4012 |
yjaB |
-9.42 |
0.126217 |
155 -- 212 |
1 -- 59 |
GNAT-family putative N-acetyltransferase; acetyl coenzyme A-binding protein |
|
_____________154_____________________________________________________________213\n_____________|_______________________________________________________________|\n5'-AAG...UUUCA___AAA____U___________UAUAA____________A________AA______UAU____AUUCG...CAG-3'\n______________AGG___AGAC__ACG_UUAGAA_____GAAUGAC__UAA_AGG_AGAG__AAUGGU___UAGU\n______________|||___|:||__||:_|:||||_____|||||||__|||_|::_|:||__||||:|___|||:\n______________UCC___UUUG__UGU_AGUCUU_____CUUACUG__AUU_UUU_UUUC__UUACUA___AUCG\n3'-UUU...CUUUA___CCA____UC___A______UA__________CC___A___A____AA______CU_____-5'\n_____________|______________________________________________________________|\n_____________60_____________________________________________________________1\n |
180 -- 186 |
29 -- 35 |
-23.4815 kcal/mol |
7.7268 kcal/mol |
6.33764 kcal/mol |
154 213@LB@ | |@LB@5'-AAG...UUUCA AAA U UAUAA A AA UAU AUUCG...CAG-3'@LB@ AGG AGAC ACG UUAGAA GAAUGAC UAA AGG AGAG AAUGGU UAGU@LB@ ||| |:|| ||: |:|||| ||||||| ||| |:: |:|| ||||:| |||:@LB@ UCC UUUG UGU AGUCUU CUUACUG AUU UUU UUUC UUACUA AUCG@LB@3'-UUU...CUUUA CCA UC A UA CC A A AA CU -5'@LB@ | |@LB@ 60 1@LB@@LB@@LB@Energy -9.42 kcal/mol@LB@Hybridization Energy -23.4815 kcal/mol@LB@Unfolding Energy - mRNA 7.7268 kcal/mol@LB@Unfolding Energy - sRNA 6.33764 kcal/mol@LB@@LB@Position - mRNA 155 -- 212@LB@Position - sRNA 1 -- 59@LB@Position Seed - mRNA 180 -- 186@LB@Position Seed - sRNA 29 -- 35@LB@ |
| 97 |
0.01584 |
0.5059 |
b0116 |
lpd |
-10.63 |
0.072174 |
157 -- 204 |
5 -- 49 |
dihydrolipoyl dehydrogenase; E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes; glycine cleavage system L protein; dihydrolipoamide dehydrogenase |
|
_____________156_______________________________________________205\n_____________|_________________________________________________|\n5'-CCG...CUGAA_____A_____U____CC_C___A________UAUA___GUC_______GUACU...UAA-3'\n______________AGACG__CGGG_AUGA__G_CGG_GAUAAAUA____GAG___AUGAUGA\n______________||||:__|:|:_||||__|_|||_:|||||||____:||___|||||||\n______________UCUGU__GUCU_UACU__C_GCC_UUAUUUAU____UUC___UACUACU\n3'-UUU...AUUUG_____AA____U____UA_U___A_______________AAU_______AUCG-5'\n_____________|_________________________________________________|\n_____________50________________________________________________4\n |
198 -- 204 |
5 -- 11 |
-27.6335 kcal/mol |
10.6788 kcal/mol |
6.32229 kcal/mol |
156 205@LB@ | |@LB@5'-CCG...CUGAA A U CC C A UAUA GUC GUACU...UAA-3'@LB@ AGACG CGGG AUGA G CGG GAUAAAUA GAG AUGAUGA@LB@ ||||: |:|: |||| | ||| :||||||| :|| |||||||@LB@ UCUGU GUCU UACU C GCC UUAUUUAU UUC UACUACU@LB@3'-UUU...AUUUG AA U UA U A AAU AUCG-5'@LB@ | |@LB@ 50 4@LB@@LB@@LB@Energy -10.63 kcal/mol@LB@Hybridization Energy -27.6335 kcal/mol@LB@Unfolding Energy - mRNA 10.6788 kcal/mol@LB@Unfolding Energy - sRNA 6.32229 kcal/mol@LB@@LB@Position - mRNA 157 -- 204@LB@Position - sRNA 5 -- 49@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 5 -- 11@LB@ |
| 45 |
0.005107 |
0.3601 |
b0435 |
bolA |
-10.01 |
0.096403 |
160 -- 209 |
3 -- 59 |
stationary-phase morphogene transcriptional repressor for mreB; also regulator for dacA dacC and ampC |
|
_____________159________________________________________________________210\n_____________|__________________________________________________________|\n5'-UGA...UUUAA____A___________C____CGU______U___AGG______UUUC___________CGUGA...CCG-3'\n______________AGGG_UGGAU_GACAU_UCAG_______UG_CGG____AGAUA______AUGAUGAUA\n______________||||_|::|:_|||||_||||_______||_|||____|:|||______|||||||||\n______________UCCC_AUUUG_CUGUA_AGUC_______AC_GCC____UUUAU______UACUACUAU\n3'-UUU...CUUUA____C_____U__________UUUACUU__U___AUUA_____UUCAAU_________CG-5'\n_____________|__________________________________________________________|\n_____________60_________________________________________________________2\n |
203 -- 209 |
3 -- 9 |
-31.3101 kcal/mol |
14.9582 kcal/mol |
6.33762 kcal/mol |
159 210@LB@ | |@LB@5'-UGA...UUUAA A C CGU U AGG UUUC CGUGA...CCG-3'@LB@ AGGG UGGAU GACAU UCAG UG CGG AGAUA AUGAUGAUA@LB@ |||| |::|: ||||| |||| || ||| |:||| |||||||||@LB@ UCCC AUUUG CUGUA AGUC AC GCC UUUAU UACUACUAU@LB@3'-UUU...CUUUA C U UUUACUU U AUUA UUCAAU CG-5'@LB@ | |@LB@ 60 2@LB@@LB@@LB@Energy -10.01 kcal/mol@LB@Hybridization Energy -31.3101 kcal/mol@LB@Unfolding Energy - mRNA 14.9582 kcal/mol@LB@Unfolding Energy - sRNA 6.33762 kcal/mol@LB@@LB@Position - mRNA 160 -- 209@LB@Position - sRNA 3 -- 59@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 3 -- 9@LB@ |
| 172 |
0.02805 |
0.531 |
b1912 |
pgsA |
-10.33 |
0.083391 |
160 -- 169 |
52 -- 61 |
phosphatidylglycerophosphate synthetase |
|
_____________159________170\n_____________|__________|\n5'-GUC...GCAAC__________UCUUA...UUG-3'\n______________AUAGGGGUAA\n______________||||||||||\n______________UAUCCCCAUU\n3'-UUU...AACUU__________UGUCU...UCG-5'\n_____________|__________|\n_____________62_________51\n |
163 -- 169 |
52 -- 58 |
-13.9577 kcal/mol |
3.55629 kcal/mol |
0.0747282 kcal/mol |
159 170@LB@ | |@LB@5'-GUC...GCAAC UCUUA...UUG-3'@LB@ AUAGGGGUAA@LB@ ||||||||||@LB@ UAUCCCCAUU@LB@3'-UUU...AACUU UGUCU...UCG-5'@LB@ | |@LB@ 62 51@LB@@LB@@LB@Energy -10.33 kcal/mol@LB@Hybridization Energy -13.9577 kcal/mol@LB@Unfolding Energy - mRNA 3.55629 kcal/mol@LB@Unfolding Energy - sRNA 0.0747282 kcal/mol@LB@@LB@Position - mRNA 160 -- 169@LB@Position - sRNA 52 -- 61@LB@Position Seed - mRNA 163 -- 169@LB@Position Seed - sRNA 52 -- 58@LB@ |
