Input and runtime details for job 1229462 (precomputed example)

Sequence input

	sRNA sequences		[.fa]
	Putative target sequences (organism of interest)		[.fa]
	Extract sequences around		start codon
	nt up (1-300)		200
	nt down (1-300)		100

CopraRNA parameters

	Consensus prediction		off
	p-value combination		no
	p-value filtering (0=off)		0

IntaRNA parameters

	Target folding window size		150
	Target max. basepair distance		100

Job ID 1229462 (server version trunk)

	Job Submitted & Queued		@ Fri Feb 16 15:25:41 CET 2018
	CopraRNA Started		@ Fri Feb 16 15:25:59 CET 2018
	CopraRNA Finished & Post-Processing		@ Fri Feb 16 20:22:57 CET 2018
	Post-Processing Finished		@ Fri Feb 16 20:23:04 CET 2018
	Job Completed		@ Fri Feb 16 20:23:29 CET 2018

DIRECT ACCESS: http://rna.informatik.uni-freiburg.de/RetrieveResults.jsp?jobID=1229462&toolName=CopraRNA ( 30 days expiry )

Description of the job

MicF

Output download complete results [zip]

Downloadable files

	CopraRNA result table:		[csv]
	Functional enrichment file		[txt]
	Auxiliary enrichment file		[csv]
	mRNA regions plot		[png] [pdf] [ps]
	sRNA regions plot		[png] [pdf] [ps]
	Functional annotation chart		[html] [pdf]
	Phylogenetic conservation		[png] [pdf]
	16S rDNA tree		[txt] [svg]

mRNA region plot

sRNA region plot

Annot. chart

Conserved, identified interactions for NC_000913 Escherichia coli str. K-12 substr. MG1655

Select: 1-10 11-20 21-30 31-40 41-50 51-60 61-70 71-80 81-90 91-100 101-110 111-120 121-130 131-140 141-150 151-160 161-170 171-180 181-190 191-200 all

Sort by selecting a column name:

Rank	CopraRNA p-value	CopraRNA fdr value	Locus Tag	Gene Name	Energy [kcal/mol]	IntaRNA p-value	Position mRNA	Position sRNA	Annotation
8	0.0001978	0.08119	b3391	hofQ	-22.13	0.000045	16 -- 73	27 -- 88	DNA catabolic putative fimbrial transporter	_____________15________________________________________________________________74\n_____________\|_________________________________________________________________\|\n5'-CUA...AUGGU___G__________C_____AU____GU_____AA____________AA_________C______GUGCA...UAG-3'\n______________AGG_CGAG_GCGAG_GCAUC__CGGU___AAUA_____AGACGGGCA___AGAAAUGG__GACGG\n______________\|::_\|\|\|:_\|\|\|\|\|_\|\|\|\|\|__\|\|\|\|___\|\|\|\|_____\|:\|\|:\|:\|\|___\|\|\|\|\|\|\|:__\|\|\|\|\|\n______________UUU_GCUU_CGCUC_CGUAG__GCCA___UUAU_____UUUGUCUGU___UCUUUACU__CUGCC\n______3'-UUUUU___G____A_________________ACU____CCCCA_________AAG________UA_____AUUAU...UCG-5'\n_____________\|_________________________________________________________________\|\n_____________89________________________________________________________________26\n	60 -- 66	35 -- 41	-51.8767 kcal/mol	10.3742 kcal/mol	19.3742 kcal/mol	15 74@LB@ \| \|@LB@5'-CUA...AUGGU G C AU GU AA AA C GUGCA...UAG-3'@LB@ AGG CGAG GCGAG GCAUC CGGU AAUA AGACGGGCA AGAAAUGG GACGG@LB@ \|:: \|\|\|: \|\|\|\|\| \|\|\|\|\| \|\|\|\| \|\|\|\| \|:\|\|:\|:\|\| \|\|\|\|\|\|\|: \|\|\|\|\|@LB@ UUU GCUU CGCUC CGUAG GCCA UUAU UUUGUCUGU UCUUUACU CUGCC@LB@ 3'-UUUUU G A ACU CCCCA AAG UA AUUAU...UCG-5'@LB@ \| \|@LB@ 89 26@LB@@LB@@LB@Energy -22.13 kcal/mol@LB@Hybridization Energy -51.8767 kcal/mol@LB@Unfolding Energy - mRNA 10.3742 kcal/mol@LB@Unfolding Energy - sRNA 19.3742 kcal/mol@LB@@LB@Position - mRNA 16 -- 73@LB@Position - sRNA 27 -- 88@LB@Position Seed - mRNA 60 -- 66@LB@Position Seed - sRNA 35 -- 41@LB@
1	2.411e-07	0.0007914	b0889	lrp	-21.69	0.000065	168 -- 212	1 -- 64	leucine-responsive global transcriptional regulator	_____________167_______________________________________________________________213\n_____________\|_________________________________________________________________\|\n5'-GUG...AGACA_________AA_______AUA_____________________________________A______AAGAA...AGC-3'\n______________GGAGUAGGG______GGA____CAGAGA_____GAC_______AAUAA___UAAUGGU_GAUAGC\n______________\|:\|:\|\|\|\|\|______:\|\|____\|\|\|\|:\|_____\|\|\|_______\|\|\|\|\|___\|\|\|\|\|:\|_\|\|\|\|\|\|\n______________CUUUAUCCC______UCU____GUCUUU_____CUG_______UUAUU___AUUACUA_CUAUCG\n3'-UUU...GCCAA_________CAUUUG___GUAA______ACUUA___CCAUUAU_____UCA______________-5'\n_____________\|________________________________________________________________\|\n_____________65_______________________________________________________________1\n	199 -- 205	7 -- 13	-30.6118 kcal/mol	2.57614 kcal/mol	6.344 kcal/mol	167 213@LB@ \| \|@LB@5'-GUG...AGACA AA AUA A AAGAA...AGC-3'@LB@ GGAGUAGGG GGA CAGAGA GAC AAUAA UAAUGGU GAUAGC@LB@ \|:\|:\|\|\|\|\| :\|\| \|\|\|\|:\| \|\|\| \|\|\|\|\| \|\|\|\|\|:\| \|\|\|\|\|\|@LB@ CUUUAUCCC UCU GUCUUU CUG UUAUU AUUACUA CUAUCG@LB@3'-UUU...GCCAA CAUUUG GUAA ACUUA CCAUUAU UCA -5'@LB@ \| \|@LB@ 65 1@LB@@LB@@LB@Energy -21.69 kcal/mol@LB@Hybridization Energy -30.6118 kcal/mol@LB@Unfolding Energy - mRNA 2.57614 kcal/mol@LB@Unfolding Energy - sRNA 6.344 kcal/mol@LB@@LB@Position - mRNA 168 -- 212@LB@Position - sRNA 1 -- 64@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 7 -- 13@LB@
10	0.0003219	0.1057	b2727	hypB	-18.91	0.000562	181 -- 230	1 -- 53	GTP hydrolase involved in nickel liganding into hydrogenases	_____________180____________________________________________________231\n_____________\|______________________________________________________\|\n5'-GCC...GAUAG_____________________C____U___CAAC___C_____C______A___AACCU...CGG-3'\n______________AAAUAGAC___CAGGAGUGAG_GAUG_GUA____AUG_GGUUG__GGUGA_GGC\n______________\|\|\|:\|\|\|\|___\|\|\|:\|:\|\|\|:_\|\|:\|_\|\|\|____\|\|:_:\|\|\|:__\|:\|\|\|_:\|\|\n______________UUUGUCUG___GUCUUUACUU_CUGC_CAU____UAU_UCAAU__CUACU_UCG\n3'-UUU...CCCCA________UAA__________A________UAUU___U_____UA_____A___-5'\n_____________\|_____________________________________________________\|\n_____________54____________________________________________________1\n	182 -- 188	46 -- 52	-37.7845 kcal/mol	12.539 kcal/mol	6.33709 kcal/mol	180 231@LB@ \| \|@LB@5'-GCC...GAUAG C U CAAC C C A AACCU...CGG-3'@LB@ AAAUAGAC CAGGAGUGAG GAUG GUA AUG GGUUG GGUGA GGC@LB@ \|\|\|:\|\|\|\| \|\|\|:\|:\|\|\|: \|\|:\| \|\|\| \|\|: :\|\|\|: \|:\|\|\| :\|\|@LB@ UUUGUCUG GUCUUUACUU CUGC CAU UAU UCAAU CUACU UCG@LB@3'-UUU...CCCCA UAA A UAUU U UA A -5'@LB@ \| \|@LB@ 54 1@LB@@LB@@LB@Energy -18.91 kcal/mol@LB@Hybridization Energy -37.7845 kcal/mol@LB@Unfolding Energy - mRNA 12.539 kcal/mol@LB@Unfolding Energy - sRNA 6.33709 kcal/mol@LB@@LB@Position - mRNA 181 -- 230@LB@Position - sRNA 1 -- 53@LB@Position Seed - mRNA 182 -- 188@LB@Position Seed - sRNA 46 -- 52@LB@
23	0.001279	0.1825	b0199	metN	-18.57	0.000714	152 -- 205	7 -- 50	DL-methionine transporter subunit	_____________151_______________________________________________________206\n_____________\|_________________________________________________________\|\n5'-CGC...CGUUU________________CCACGACUAACUU_______A__________UC________AAAAC...UUU-3'\n______________CAGGCAUUC_GAGAUG_____________AAUGACG_UAAUAAAUAA____AAUGAU\n______________\|\|\|:\|\|\|\|\|_\|\|:\|\|\|_____________\|\|\|\|\|\|\|_\|\|\|\|\|\|\|\|\|\|____\|\|\|\|\|\|\n______________GUCUGUAAG_CUUUAC_____________UUACUGC_AUUAUUUAUU____UUACUA\n3'-UUU...CAUUU_________U__________________________C__________UCAA______CUAUCG-5'\n_____________\|_________________________________________________________\|\n_____________51________________________________________________________6\n	191 -- 197	17 -- 23	-35.1892 kcal/mol	10.2873 kcal/mol	6.33206 kcal/mol	151 206@LB@ \| \|@LB@5'-CGC...CGUUU CCACGACUAACUU A UC AAAAC...UUU-3'@LB@ CAGGCAUUC GAGAUG AAUGACG UAAUAAAUAA AAUGAU@LB@ \|\|\|:\|\|\|\|\| \|\|:\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|@LB@ GUCUGUAAG CUUUAC UUACUGC AUUAUUUAUU UUACUA@LB@3'-UUU...CAUUU U C UCAA CUAUCG-5'@LB@ \| \|@LB@ 51 6@LB@@LB@@LB@Energy -18.57 kcal/mol@LB@Hybridization Energy -35.1892 kcal/mol@LB@Unfolding Energy - mRNA 10.2873 kcal/mol@LB@Unfolding Energy - sRNA 6.33206 kcal/mol@LB@@LB@Position - mRNA 152 -- 205@LB@Position - sRNA 7 -- 50@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 17 -- 23@LB@
4	6.512e-06	0.005344	b0929	ompF	-18.50	0.000749	185 -- 210	1 -- 33	outer membrane porin 1a (Ia;b;F)	_____________184_______________________________211\n_____________\|_________________________________\|\n5'-GUU...AAACC____G____________________________GCAAU...UAG-3'\n______________AUGA_GGUAAUAAAUA______AUGAUGA_AGC\n______________\|\|\|\|_\|\|\|\|\|\|\|\|\|\|\|______\|\|\|\|\|\|\|_\|\|\|\n______________UACU_CCAUUAUUUAU______UACUACU_UCG\n3'-UUU...UUACU____G___________UUCAAU_______A___-5'\n_____________\|________________________________\|\n_____________34_______________________________1\n	201 -- 207	5 -- 11	-27.1062 kcal/mol	3.13427 kcal/mol	5.47105 kcal/mol	184 211@LB@ \| \|@LB@5'-GUU...AAACC G GCAAU...UAG-3'@LB@ AUGA GGUAAUAAAUA AUGAUGA AGC@LB@ \|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|@LB@ UACU CCAUUAUUUAU UACUACU UCG@LB@3'-UUU...UUACU G UUCAAU A -5'@LB@ \| \|@LB@ 34 1@LB@@LB@@LB@Energy -18.50 kcal/mol@LB@Hybridization Energy -27.1062 kcal/mol@LB@Unfolding Energy - mRNA 3.13427 kcal/mol@LB@Unfolding Energy - sRNA 5.47105 kcal/mol@LB@@LB@Position - mRNA 185 -- 210@LB@Position - sRNA 1 -- 33@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 5 -- 11@LB@
6	0.0001423	0.07172	b3183	obgE	-17.58	0.001399	174 -- 220	1 -- 51	GTPase involved in cell partioning and DNA repair	_____________173____________________________________________________221\n_____________\|______________________________________________________\|\n5'-UUU...CCCGC__________________UUU____AG___A__________UGU__________AUCGA...GCC-3'\n______________GCAGGC______GAAUGA___ACGG__AAU_AAAUGAAGUU___UGAUGA_AGC\n______________:\|\|\|:\|______:\|\|\|\|\|___\|\|\|\|__\|\|\|_\|\|\|\|:\|\|\|\|\|___\|\|\|\|\|\|_\|\|\|\n______________UGUCUG______UUUACU___UGCC__UUA_UUUAUUUCAA___ACUACU_UCG\n3'-UUU...CCAUU______UAAGUC______UAC____A_______________UU_______A___-5'\n_____________\|_____________________________________________________\|\n_____________52____________________________________________________1\n	202 -- 208	13 -- 19	-33.7182 kcal/mol	9.79823 kcal/mol	6.33528 kcal/mol	173 221@LB@ \| \|@LB@5'-UUU...CCCGC UUU AG A UGU AUCGA...GCC-3'@LB@ GCAGGC GAAUGA ACGG AAU AAAUGAAGUU UGAUGA AGC@LB@ :\|\|\|:\| :\|\|\|\|\| \|\|\|\| \|\|\| \|\|\|\|:\|\|\|\|\| \|\|\|\|\|\| \|\|\|@LB@ UGUCUG UUUACU UGCC UUA UUUAUUUCAA ACUACU UCG@LB@3'-UUU...CCAUU UAAGUC UAC A UU A -5'@LB@ \| \|@LB@ 52 1@LB@@LB@@LB@Energy -17.58 kcal/mol@LB@Hybridization Energy -33.7182 kcal/mol@LB@Unfolding Energy - mRNA 9.79823 kcal/mol@LB@Unfolding Energy - sRNA 6.33528 kcal/mol@LB@@LB@Position - mRNA 174 -- 220@LB@Position - sRNA 1 -- 51@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 13 -- 19@LB@
135	0.02191	0.526	b1342	ydaN	-17.19	0.001818	129 -- 197	1 -- 58	putative Zn(II) transporter	_____________128______________________________________________________________________198\n_____________\|________________________________________________________________________\|\n5'-CGU...GUAAU_______UG_______GCGUAACAGGGC______GCUA____UACA________UGC___________A___ACUGU...AUG-3'\n______________GGGGUGA__AGAUGUU____________CAGAAG_____GAC______AAAUAA___GUUGAUGAUGG_GGC\n______________\|\|\|\|\|:\|__\|\|\|::\|\|____________\|\|\|\|\|:_____\|\|\|______\|\|\|\|\|\|___\|\|\|:\|\|\|\|\|\|:_:\|\|\n______________CCCCAUU__UCUGUAA____________GUCUUU_____CUG______UUUAUU___CAAUUACUACU_UCG\n3'-UUU...UUUAU_______UG_________________________ACUUA___CCAUUA______U_____________A___-5'\n_____________\|_______________________________________________________________________\|\n_____________59______________________________________________________________________1\n	187 -- 193	5 -- 11	-40.4273 kcal/mol	16.9018 kcal/mol	6.33758 kcal/mol	128 198@LB@ \| \|@LB@5'-CGU...GUAAU UG GCGUAACAGGGC GCUA UACA UGC A ACUGU...AUG-3'@LB@ GGGGUGA AGAUGUU CAGAAG GAC AAAUAA GUUGAUGAUGG GGC@LB@ \|\|\|\|\|:\| \|\|\|::\|\| \|\|\|\|\|: \|\|\| \|\|\|\|\|\| \|\|\|:\|\|\|\|\|\|: :\|\|@LB@ CCCCAUU UCUGUAA GUCUUU CUG UUUAUU CAAUUACUACU UCG@LB@3'-UUU...UUUAU UG ACUUA CCAUUA U A -5'@LB@ \| \|@LB@ 59 1@LB@@LB@@LB@Energy -17.19 kcal/mol@LB@Hybridization Energy -40.4273 kcal/mol@LB@Unfolding Energy - mRNA 16.9018 kcal/mol@LB@Unfolding Energy - sRNA 6.33758 kcal/mol@LB@@LB@Position - mRNA 129 -- 197@LB@Position - sRNA 1 -- 58@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 5 -- 11@LB@
53	0.006355	0.3902	b2916	argP	-17.11	0.001913	217 -- 267	1 -- 51	transcriptional regulator for arginine transport and DNA replication genes; replication initiation inhibitor	_____________216____________________________________________________268\n_____________\|______________________________________________________\|\n5'-GGC...GGACU____A_____A____CAC_______________C_____CGAG_____UUG___GCGCG...CAG-3'\n______________ACAG_ACAUU_CAGG___UGGAUG_CGGUGAUA_GUGAA______GAU___AGC\n______________\|\|\|\|_\|\|\|\|\|_\|\|\|:___\|\|:\|\|\|_\|\|\|\|:\|\|\|_:\|:\|\|______\|\|\|___\|\|\|\n______________UGUC_UGUAA_GUCU___ACUUAC_GCCAUUAU_UAUUU______CUA___UCG\n3'-UUU...CCAUU_______________UU_______U________U_____CAAUUA___CUA___-5'\n_____________\|_____________________________________________________\|\n_____________52____________________________________________________1\n	242 -- 248	22 -- 28	-33.3201 kcal/mol	9.87503 kcal/mol	6.33528 kcal/mol	216 268@LB@ \| \|@LB@5'-GGC...GGACU A A CAC C CGAG UUG GCGCG...CAG-3'@LB@ ACAG ACAUU CAGG UGGAUG CGGUGAUA GUGAA GAU AGC@LB@ \|\|\|\| \|\|\|\|\| \|\|\|: \|\|:\|\|\| \|\|\|\|:\|\|\| :\|:\|\| \|\|\| \|\|\|@LB@ UGUC UGUAA GUCU ACUUAC GCCAUUAU UAUUU CUA UCG@LB@3'-UUU...CCAUU UU U U CAAUUA CUA -5'@LB@ \| \|@LB@ 52 1@LB@@LB@@LB@Energy -17.11 kcal/mol@LB@Hybridization Energy -33.3201 kcal/mol@LB@Unfolding Energy - mRNA 9.87503 kcal/mol@LB@Unfolding Energy - sRNA 6.33528 kcal/mol@LB@@LB@Position - mRNA 217 -- 267@LB@Position - sRNA 1 -- 51@LB@Position Seed - mRNA 242 -- 248@LB@Position Seed - sRNA 22 -- 28@LB@
19	0.0008973	0.1482	b3964	yijD	-17.08	0.001951	152 -- 223	2 -- 55	DUF1422 family inner membrane protein	_____________151______________________________________________________________________224\n_____________\|________________________________________________________________________\|\n5'-ACU...UCGCC______A___GAAAACCGCAAU_____CG_______UGAAG____A________AC___CA___CAA_____AGGUA...UGC-3'\n______________GUGAAC_AGA____________UAUUC__GGAAAUG_____GACG_GUAAUGAA__AAG__AAU___GAUAG\n______________\|\|:\|\|\|_\|\|\|____________:\|\|\|\|__:\|\|\|\|\|\|_____\|\|\|\|_\|\|\|\|\|:\|\|__\|\|\|__\|\|\|___\|\|\|\|\|\n______________CAUUUG_UCU____________GUAAG__UCUUUAC_____CUGC_CAUUAUUU__UUC__UUA___CUAUC\n3'-UUU...AUCCC____________________________________UUA_______________AU___AA___CUA_____G-5'\n_____________\|________________________________________________________________________\|\n_____________56_______________________________________________________________________1\n	199 -- 205	20 -- 26	-31.4266 kcal/mol	8.00944 kcal/mol	6.33752 kcal/mol	151 224@LB@ \| \|@LB@5'-ACU...UCGCC A GAAAACCGCAAU CG UGAAG A AC CA CAA AGGUA...UGC-3'@LB@ GUGAAC AGA UAUUC GGAAAUG GACG GUAAUGAA AAG AAU GAUAG@LB@ \|\|:\|\|\| \|\|\| :\|\|\|\| :\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|:\|\| \|\|\| \|\|\| \|\|\|\|\|@LB@ CAUUUG UCU GUAAG UCUUUAC CUGC CAUUAUUU UUC UUA CUAUC@LB@3'-UUU...AUCCC UUA AU AA CUA G-5'@LB@ \| \|@LB@ 56 1@LB@@LB@@LB@Energy -17.08 kcal/mol@LB@Hybridization Energy -31.4266 kcal/mol@LB@Unfolding Energy - mRNA 8.00944 kcal/mol@LB@Unfolding Energy - sRNA 6.33752 kcal/mol@LB@@LB@Position - mRNA 152 -- 223@LB@Position - sRNA 2 -- 55@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 20 -- 26@LB@
14	0.0005823	0.1358	b4348	hsdS	-17.02	0.002033	190 -- 210	27 -- 58	specificity determinant for hsdM and hsdR	_____________189______________________________211\n_____________\|________________________________\|\n5'-CUG...UUGGU________________________________GGAAA...UAA-3'\n______________GGGGUGA__________AGGAAUGAGUG_CGG\n______________\|\|\|\|\|:\|__________\|\|:\|\|\|\|\|:\|\|_\|\|\|\n______________CCCCAUU__________UCUUUACUUAC_GCC\n3'-UUU...UUUAU_______UGUCUGUAAG___________U___AUUAU...UCG-5'\n_____________\|________________________________\|\n_____________59_______________________________26\n	190 -- 196	52 -- 58	-27.0928 kcal/mol	3.78881 kcal/mol	6.28755 kcal/mol	189 211@LB@ \| \|@LB@5'-CUG...UUGGU GGAAA...UAA-3'@LB@ GGGGUGA AGGAAUGAGUG CGG@LB@ \|\|\|\|\|:\| \|\|:\|\|\|\|\|:\|\| \|\|\|@LB@ CCCCAUU UCUUUACUUAC GCC@LB@3'-UUU...UUUAU UGUCUGUAAG U AUUAU...UCG-5'@LB@ \| \|@LB@ 59 26@LB@@LB@@LB@Energy -17.02 kcal/mol@LB@Hybridization Energy -27.0928 kcal/mol@LB@Unfolding Energy - mRNA 3.78881 kcal/mol@LB@Unfolding Energy - sRNA 6.28755 kcal/mol@LB@@LB@Position - mRNA 190 -- 210@LB@Position - sRNA 27 -- 58@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 52 -- 58@LB@

Details of Selected Interaction Download Interaction Details

mRNA

sRNA

Energy

Hybridization Energy

Unfolding Energy - mRNA

Unfolding Energy - sRNA

Position - mRNA

Position - sRNA

Position Seed - mRNA

Position Seed - sRNA

Evolutionary conservation of mRNA targets (alignment generated with Jalview)

Evolutionary conservation of sRNA (alignment generated with Jalview)

Job resubmission

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When using CopraRNA please cite :

Patrick R. Wright, Jens Georg, Martin Mann, Dragos A. Sorescu, Andreas S. Richter, Steffen Lott, Robert Kleinkauf, Wolfgang R. Hess, and Rolf Backofen
CopraRNA and IntaRNA: predicting small RNA targets, networks and interaction domains
Nucleic Acids Research, 2014, 42 (W1), W119-W123.
Patrick R. Wright, Andreas S. Richter, Kai Papenfort, Martin Mann, Joerg Vogel, Wolfgang R. Hess, Rolf Backofen and Jens Georg
Comparative genomics boosts target prediction for bacterial small RNAs
Proc Natl Acad Sci USA, 2013, 110 (37), E3487-E3496.
Martin Raden, Syed M Ali, Omer S Alkhnbashi, Anke Busch, Fabrizio Costa, Jason A Davis, Florian Eggenhofer, Rick Gelhausen, Jens Georg, Steffen Heyne, Michael Hiller, Kousik Kundu, Robert Kleinkauf, Steffen C Lott, Mostafa M Mohamed, Alexander Mattheis, Milad Miladi, Andreas S Richter, Sebastian Will, Joachim Wolff, Patrick R Wright, and Rolf Backofen
Freiburg RNA tools: a central online resource for RNA-focused research and teaching
Nucleic Acids Research, 46(W1), W25-W29, 2018.

Results are computed with CopraRNA version 2.1.2

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