| 74 |
0.0107 |
0.4523 |
b3385 |
gph |
-12.85 |
0.023515 |
41 -- 77 |
8 -- 48 |
phosphoglycolate phosphatase |
|
_____________40____________________________________________78\n_____________|_____________________________________________|\n5'-ACU...GCUUU_______GACU__________________C_______________ACAAC...UGU-3'\n______________GACAUUC____AGAAGUG___GACGGUGG___GUGAAG___GUGA\n______________|||||||____||||:||___||||||::___:|:|||___:|||\n______________CUGUAAG____UCUUUAC___CUGCCAUU___UAUUUC___UACU\n3'-UUU...UUUGU__________________UUA________AUU______AAU____ACUAUCG-5'\n_____________|_____________________________________________|\n_____________49____________________________________________7\n |
60 -- 66 |
24 -- 30 |
-29.3756 kcal/mol |
10.2075 kcal/mol |
6.31567 kcal/mol |
40 78@LB@ | |@LB@5'-ACU...GCUUU GACU C ACAAC...UGU-3'@LB@ GACAUUC AGAAGUG GACGGUGG GUGAAG GUGA@LB@ ||||||| ||||:|| ||||||:: :|:||| :|||@LB@ CUGUAAG UCUUUAC CUGCCAUU UAUUUC UACU@LB@3'-UUU...UUUGU UUA AUU AAU ACUAUCG-5'@LB@ | |@LB@ 49 7@LB@@LB@@LB@Energy -12.85 kcal/mol@LB@Hybridization Energy -29.3756 kcal/mol@LB@Unfolding Energy - mRNA 10.2075 kcal/mol@LB@Unfolding Energy - sRNA 6.31567 kcal/mol@LB@@LB@Position - mRNA 41 -- 77@LB@Position - sRNA 8 -- 48@LB@Position Seed - mRNA 60 -- 66@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 200 |
0.03384 |
0.5555 |
b0316 |
yahB |
-11.86 |
0.039401 |
41 -- 57 |
47 -- 61 |
putative DNA-bindng transcriptional regulator |
b0504 |
_____________40________________58\n_____________|_________________|\n5'-CUG...ACUGC__________UUU____AUAUG...CUU-3'\n______________GUGGGGGUAA___CAGA\n______________:|:|||||||___||||\n______________UAUCCCCAUU___GUCU\n3'-UUU...AACUU__________U______GUAAG...UCG-5'\n_____________|_________________|\n_____________62________________46\n |
44 -- 50 |
52 -- 58 |
-17.391 kcal/mol |
3.44789 kcal/mol |
2.08204 kcal/mol |
40 58@LB@ | |@LB@5'-CUG...ACUGC UUU AUAUG...CUU-3'@LB@ GUGGGGGUAA CAGA@LB@ :|:||||||| ||||@LB@ UAUCCCCAUU GUCU@LB@3'-UUU...AACUU U GUAAG...UCG-5'@LB@ | |@LB@ 62 46@LB@@LB@@LB@Energy -11.86 kcal/mol@LB@Hybridization Energy -17.391 kcal/mol@LB@Unfolding Energy - mRNA 3.44789 kcal/mol@LB@Unfolding Energy - sRNA 2.08204 kcal/mol@LB@@LB@Position - mRNA 41 -- 57@LB@Position - sRNA 47 -- 61@LB@Position Seed - mRNA 44 -- 50@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 49 |
0.00563 |
0.3739 |
b2239 |
glpQ |
-9.17 |
0.140723 |
61 -- 103 |
1 -- 49 |
periplasmic glycerophosphodiester phosphodiesterase |
|
_____________60__________________________________________________104\n_____________|___________________________________________________|\n5'-CGG...ACCGU____UUC_____CUG__________CUU______U________________GGCAG...UCA-3'\n______________GGAC___UUCGG____GGAUGGCGG_______UA_GG_UAAUGAU__UGGC\n______________:|||___|||:|____|:|||:|||_______||_:|_|||||||__|:||\n______________UCUG___AAGUC____CUUACUGCC_______AU_UC_AUUACUA__AUCG\n3'-UUU...AUUUG____U_______UUUA_________AUUAUUU__U__A_______CU____-5'\n_____________|__________________________________________________|\n_____________50_________________________________________________1\n |
93 -- 99 |
7 -- 13 |
-28.1898 kcal/mol |
12.697 kcal/mol |
6.32371 kcal/mol |
60 104@LB@ | |@LB@5'-CGG...ACCGU UUC CUG CUU U GGCAG...UCA-3'@LB@ GGAC UUCGG GGAUGGCGG UA GG UAAUGAU UGGC@LB@ :||| |||:| |:|||:||| || :| ||||||| |:||@LB@ UCUG AAGUC CUUACUGCC AU UC AUUACUA AUCG@LB@3'-UUU...AUUUG U UUUA AUUAUUU U A CU -5'@LB@ | |@LB@ 50 1@LB@@LB@@LB@Energy -9.17 kcal/mol@LB@Hybridization Energy -28.1898 kcal/mol@LB@Unfolding Energy - mRNA 12.697 kcal/mol@LB@Unfolding Energy - sRNA 6.32371 kcal/mol@LB@@LB@Position - mRNA 61 -- 103@LB@Position - sRNA 1 -- 49@LB@Position Seed - mRNA 93 -- 99@LB@Position Seed - sRNA 7 -- 13@LB@ |
| 173 |
0.02817 |
0.531 |
b0952 |
pqiC |
-7.60 |
0.267291 |
63 -- 71 |
1 -- 9 |
DUF330 family putative lipoprotein |
|
_____________62________72\n_____________|_________|\n5'-ACG...AACAA_________GGAUA...GCG-3'\n______________GAUGGUGGC\n______________||||:|:||\n______________CUACUAUCG\n3'-UUU...AAUUA_________-5'\n_____________|________|\n_____________10_______1\n |
65 -- 71 |
1 -- 7 |
-13.4268 kcal/mol |
5.80912 kcal/mol |
0.0200155 kcal/mol |
62 72@LB@ | |@LB@5'-ACG...AACAA GGAUA...GCG-3'@LB@ GAUGGUGGC@LB@ ||||:|:||@LB@ CUACUAUCG@LB@3'-UUU...AAUUA -5'@LB@ | |@LB@ 10 1@LB@@LB@@LB@Energy -7.60 kcal/mol@LB@Hybridization Energy -13.4268 kcal/mol@LB@Unfolding Energy - mRNA 5.80912 kcal/mol@LB@Unfolding Energy - sRNA 0.0200155 kcal/mol@LB@@LB@Position - mRNA 63 -- 71@LB@Position - sRNA 1 -- 9@LB@Position Seed - mRNA 65 -- 71@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 82 |
0.0113 |
0.4523 |
b3747 |
kup |
-9.05 |
0.148352 |
64 -- 70 |
53 -- 59 |
potassium transporter |
|
_____________63______71\n_____________|_______|\n5'-AAA...AAAGG_______UUUUU...GUG-3'\n______________GGGGGUA\n______________:||||||\n______________UCCCCAU\n3'-UUU...CUUUA_______UUGUC...UCG-5'\n_____________|_______|\n_____________60______52\n |
64 -- 70 |
53 -- 59 |
-11.6233 kcal/mol |
2.51972 kcal/mol |
0.0564539 kcal/mol |
63 71@LB@ | |@LB@5'-AAA...AAAGG UUUUU...GUG-3'@LB@ GGGGGUA@LB@ :||||||@LB@ UCCCCAU@LB@3'-UUU...CUUUA UUGUC...UCG-5'@LB@ | |@LB@ 60 52@LB@@LB@@LB@Energy -9.05 kcal/mol@LB@Hybridization Energy -11.6233 kcal/mol@LB@Unfolding Energy - mRNA 2.51972 kcal/mol@LB@Unfolding Energy - sRNA 0.0564539 kcal/mol@LB@@LB@Position - mRNA 64 -- 70@LB@Position - sRNA 53 -- 59@LB@Position Seed - mRNA 64 -- 70@LB@Position Seed - sRNA 53 -- 59@LB@ |
| 56 |
0.007094 |
0.4159 |
b1242 |
ychE |
-10.14 |
0.091024 |
67 -- 90 |
1 -- 23 |
UPF0056 family inner membrane protein |
|
_____________66_______________________91\n_____________|________________________|\n5'-CAU...ACAAC_______CAA___C_A________AAUUU...GCA-3'\n______________UAGAUAA___UAA_G_AUGAUAGC\n______________||:||||___|||_|_||||||||\n______________AUUUAUU___AUU_C_UACUAUCG\n3'-UUU...CCAUU_______UCA___A__________-5'\n_____________|_______________________|\n_____________24______________________1\n |
84 -- 90 |
1 -- 7 |
-13.9916 kcal/mol |
3.74778 kcal/mol |
0.105066 kcal/mol |
66 91@LB@ | |@LB@5'-CAU...ACAAC CAA C A AAUUU...GCA-3'@LB@ UAGAUAA UAA G AUGAUAGC@LB@ ||:|||| ||| | ||||||||@LB@ AUUUAUU AUU C UACUAUCG@LB@3'-UUU...CCAUU UCA A -5'@LB@ | |@LB@ 24 1@LB@@LB@@LB@Energy -10.14 kcal/mol@LB@Hybridization Energy -13.9916 kcal/mol@LB@Unfolding Energy - mRNA 3.74778 kcal/mol@LB@Unfolding Energy - sRNA 0.105066 kcal/mol@LB@@LB@Position - mRNA 67 -- 90@LB@Position - sRNA 1 -- 23@LB@Position Seed - mRNA 84 -- 90@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 141 |
0.0236 |
0.526 |
b3339 |
tufA |
-10.69 |
0.070202 |
69 -- 84 |
1 -- 19 |
translation elongation factor EF-Tu 1 |
b3980 |
_____________68__________________85\n_____________|___________________|\n5'-AAU...AUUCC___________________GCCGA...CCA-3'\n______________UGAAGU__AUGAUGA_AGC\n______________|:||||__|||||||_|||\n______________AUUUCA__UACUACU_UCG\n3'-UUU...UAUUU______AU_______A___-5'\n_____________|__________________|\n_____________20_________________1\n |
75 -- 81 |
5 -- 11 |
-13.5879 kcal/mol |
2.83361 kcal/mol |
0.0638423 kcal/mol |
68 85@LB@ | |@LB@5'-AAU...AUUCC GCCGA...CCA-3'@LB@ UGAAGU AUGAUGA AGC@LB@ |:|||| ||||||| |||@LB@ AUUUCA UACUACU UCG@LB@3'-UUU...UAUUU AU A -5'@LB@ | |@LB@ 20 1@LB@@LB@@LB@Energy -10.69 kcal/mol@LB@Hybridization Energy -13.5879 kcal/mol@LB@Unfolding Energy - mRNA 2.83361 kcal/mol@LB@Unfolding Energy - sRNA 0.0638423 kcal/mol@LB@@LB@Position - mRNA 69 -- 84@LB@Position - sRNA 1 -- 19@LB@Position Seed - mRNA 75 -- 81@LB@Position Seed - sRNA 5 -- 11@LB@ |
| 24 |
0.001422 |
0.1946 |
b0065 |
yabI |
-15.22 |
0.006192 |
70 -- 99 |
1 -- 29 |
DedA family inner membrane protein |
|
_____________69______________________________100\n_____________|_______________________________|\n5'-UGA...CGUGC____U_____GAA_____G____________CGUCA...GUU-3'\n______________CGGU_GUGAA___AAAGU_AAUGAUG_UAGC\n______________||||_:|:||___|||||_|||||||_||||\n______________GCCA_UAUUU___UUUCA_UUACUAC_AUCG\n3'-UUU...UUACU____U_____A_______A_______U____-5'\n_____________|______________________________|\n_____________30_____________________________1\n |
89 -- 95 |
6 -- 12 |
-22.6746 kcal/mol |
5.32597 kcal/mol |
2.12711 kcal/mol |
69 100@LB@ | |@LB@5'-UGA...CGUGC U GAA G CGUCA...GUU-3'@LB@ CGGU GUGAA AAAGU AAUGAUG UAGC@LB@ |||| :|:|| ||||| ||||||| ||||@LB@ GCCA UAUUU UUUCA UUACUAC AUCG@LB@3'-UUU...UUACU U A A U -5'@LB@ | |@LB@ 30 1@LB@@LB@@LB@Energy -15.22 kcal/mol@LB@Hybridization Energy -22.6746 kcal/mol@LB@Unfolding Energy - mRNA 5.32597 kcal/mol@LB@Unfolding Energy - sRNA 2.12711 kcal/mol@LB@@LB@Position - mRNA 70 -- 99@LB@Position - sRNA 1 -- 29@LB@Position Seed - mRNA 89 -- 95@LB@Position Seed - sRNA 6 -- 12@LB@ |
| 61 |
0.008575 |
0.4523 |
b3464 |
ftsY |
-13.38 |
0.017655 |
71 -- 119 |
2 -- 50 |
Signal Recognition Particle (SRP) receptor |
|
_____________70__________________________________________________120\n_____________|___________________________________________________|\n5'-CCC...UCCGC______ACACAUACUUGCA_______AU______U________________ACUAU...CGG-3'\n______________CAGAUA_____________GGCGGUG__GUGAAU_AAGUUAA__GUGAUAG\n______________||||:|_____________|:||||:__:|:|||_|||||||__:||||||\n______________GUCUGU_____________CUGCCAU__UAUUUA_UUCAAUU__UACUAUC\n3'-UUU...CAUUU______AAGUCUUUACUUA_______________U_______AC_______G-5'\n_____________|___________________________________________________|\n_____________51__________________________________________________1\n |
113 -- 119 |
2 -- 8 |
-30.4135 kcal/mol |
10.695 kcal/mol |
6.33478 kcal/mol |
70 120@LB@ | |@LB@5'-CCC...UCCGC ACACAUACUUGCA AU U ACUAU...CGG-3'@LB@ CAGAUA GGCGGUG GUGAAU AAGUUAA GUGAUAG@LB@ ||||:| |:||||: :|:||| ||||||| :||||||@LB@ GUCUGU CUGCCAU UAUUUA UUCAAUU UACUAUC@LB@3'-UUU...CAUUU AAGUCUUUACUUA U AC G-5'@LB@ | |@LB@ 51 1@LB@@LB@@LB@Energy -13.38 kcal/mol@LB@Hybridization Energy -30.4135 kcal/mol@LB@Unfolding Energy - mRNA 10.695 kcal/mol@LB@Unfolding Energy - sRNA 6.33478 kcal/mol@LB@@LB@Position - mRNA 71 -- 119@LB@Position - sRNA 2 -- 50@LB@Position Seed - mRNA 113 -- 119@LB@Position Seed - sRNA 2 -- 8@LB@ |
| 66 |
0.009484 |
0.4523 |
b4034 |
malE |
-12.98 |
0.021943 |
73 -- 123 |
2 -- 55 |
maltose transporter subunit |
|
_____________72_____________________________________________________124\n_____________|______________________________________________________|\n5'-AGG...AUUCU_________G_____CACAAAGC_________GGC______GC__G__G_____AAAGA...UGG-3'\n______________GU_AACAGA_A_UCA_________GACGGUGG___GUAGGG__AA_GA_GAUGG\n______________||_||||||_|_|||_________||||||::___:||::|__||_||_|||:|\n______________CA_UUGUCU_U_AGU_________CUGCCAUU___UAUUUC__UU_CU_CUAUC\n3'-UUU...AUCCC__U______G_A___CUUUACUUA________AUU______AA__A__A_____G-5'\n_____________|______________________________________________________|\n_____________56_____________________________________________________1\n |
95 -- 101 |
24 -- 30 |
-30.2337 kcal/mol |
10.9143 kcal/mol |
6.33752 kcal/mol |
72 124@LB@ | |@LB@5'-AGG...AUUCU G CACAAAGC GGC GC G G AAAGA...UGG-3'@LB@ GU AACAGA A UCA GACGGUGG GUAGGG AA GA GAUGG@LB@ || |||||| | ||| ||||||:: :||::| || || |||:|@LB@ CA UUGUCU U AGU CUGCCAUU UAUUUC UU CU CUAUC@LB@3'-UUU...AUCCC U G A CUUUACUUA AUU AA A A G-5'@LB@ | |@LB@ 56 1@LB@@LB@@LB@Energy -12.98 kcal/mol@LB@Hybridization Energy -30.2337 kcal/mol@LB@Unfolding Energy - mRNA 10.9143 kcal/mol@LB@Unfolding Energy - sRNA 6.33752 kcal/mol@LB@@LB@Position - mRNA 73 -- 123@LB@Position - sRNA 2 -- 55@LB@Position Seed - mRNA 95 -- 101@LB@Position Seed - sRNA 24 -- 30@LB@ |
