169 |
0.02775 |
0.531 |
b2110 |
yehC |
-5.87 |
0.481945 |
191 -- 199 |
20 -- 28 |
putative periplasmic pilin chaperone |
|
_____________190_______200\n_____________|_________|\n5'-CAG...CUCCA_________CAUGG...CCG-3'\n______________GGUAAUAAA\n______________|||||||||\n______________CCAUUAUUU\n3'-UUU...UACUG_________AUUUC...UCG-5'\n_____________|_________|\n_____________29________19\n |
193 -- 199 |
20 -- 26 |
-7.96952 kcal/mol |
1.36589 kcal/mol |
0.737257 kcal/mol |
190 200@LB@ | |@LB@5'-CAG...CUCCA CAUGG...CCG-3'@LB@ GGUAAUAAA@LB@ |||||||||@LB@ CCAUUAUUU@LB@3'-UUU...UACUG AUUUC...UCG-5'@LB@ | |@LB@ 29 19@LB@@LB@@LB@Energy -5.87 kcal/mol@LB@Hybridization Energy -7.96952 kcal/mol@LB@Unfolding Energy - mRNA 1.36589 kcal/mol@LB@Unfolding Energy - sRNA 0.737257 kcal/mol@LB@@LB@Position - mRNA 191 -- 199@LB@Position - sRNA 20 -- 28@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 20 -- 26@LB@ |
51 |
0.006039 |
0.3887 |
b3822 |
recQ |
-9.34 |
0.130811 |
192 -- 200 |
50 -- 58 |
ATP-dependent DNA helicase |
|
_____________191_______201\n_____________|_________|\n5'-CGC...CAAUC_________GUGGC...UUA-3'\n______________GGGGUGAAU\n______________|||||:||:\n______________CCCCAUUUG\n3'-UUU...UUUAU_________UCUGU...UCG-5'\n_____________|_________|\n_____________59________49\n |
194 -- 200 |
50 -- 56 |
-13.8974 kcal/mol |
3.8337 kcal/mol |
0.72763 kcal/mol |
191 201@LB@ | |@LB@5'-CGC...CAAUC GUGGC...UUA-3'@LB@ GGGGUGAAU@LB@ |||||:||:@LB@ CCCCAUUUG@LB@3'-UUU...UUUAU UCUGU...UCG-5'@LB@ | |@LB@ 59 49@LB@@LB@@LB@Energy -9.34 kcal/mol@LB@Hybridization Energy -13.8974 kcal/mol@LB@Unfolding Energy - mRNA 3.8337 kcal/mol@LB@Unfolding Energy - sRNA 0.72763 kcal/mol@LB@@LB@Position - mRNA 192 -- 200@LB@Position - sRNA 50 -- 58@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 50 -- 56@LB@ |
88 |
0.01388 |
0.5059 |
b3809 |
dapF |
-7.53 |
0.274407 |
192 -- 207 |
1 -- 17 |
diaminopimelate epimerase |
|
_____________191_______________208\n_____________|_________________|\n5'-UCU...GAUUG____A_______C____UCUCG...UGG-3'\n______________GAGU_AAUGAUG__AGU\n______________:|||_|||||||__||:\n______________UUCA_UUACUAC__UCG\n3'-UUU...UUUAU____A_______UA___-5'\n_____________|________________|\n_____________18_______________1\n |
197 -- 203 |
6 -- 12 |
-9.99588 kcal/mol |
2.41483 kcal/mol |
0.0529402 kcal/mol |
191 208@LB@ | |@LB@5'-UCU...GAUUG A C UCUCG...UGG-3'@LB@ GAGU AAUGAUG AGU@LB@ :||| ||||||| ||:@LB@ UUCA UUACUAC UCG@LB@3'-UUU...UUUAU A UA -5'@LB@ | |@LB@ 18 1@LB@@LB@@LB@Energy -7.53 kcal/mol@LB@Hybridization Energy -9.99588 kcal/mol@LB@Unfolding Energy - mRNA 2.41483 kcal/mol@LB@Unfolding Energy - sRNA 0.0529402 kcal/mol@LB@@LB@Position - mRNA 192 -- 207@LB@Position - sRNA 1 -- 17@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 6 -- 12@LB@ |
119 |
0.019 |
0.5155 |
b0904 |
focA |
-10.20 |
0.088413 |
192 -- 208 |
1 -- 18 |
formate channel |
|
_____________191________________209\n_____________|__________________|\n5'-GAG...AAGAG______________A___UGACA...AGA-3'\n______________AGAGUUAGUG_UGA_AGC\n______________|:|||||:||_|||_|||\n______________UUUCAAUUAC_ACU_UCG\n3'-UUU...AUUUA__________U___A___-5'\n_____________|_________________|\n_____________19________________1\n |
195 -- 201 |
9 -- 15 |
-16.1977 kcal/mol |
5.93514 kcal/mol |
0.0611543 kcal/mol |
191 209@LB@ | |@LB@5'-GAG...AAGAG A UGACA...AGA-3'@LB@ AGAGUUAGUG UGA AGC@LB@ |:|||||:|| ||| |||@LB@ UUUCAAUUAC ACU UCG@LB@3'-UUU...AUUUA U A -5'@LB@ | |@LB@ 19 1@LB@@LB@@LB@Energy -10.20 kcal/mol@LB@Hybridization Energy -16.1977 kcal/mol@LB@Unfolding Energy - mRNA 5.93514 kcal/mol@LB@Unfolding Energy - sRNA 0.0611543 kcal/mol@LB@@LB@Position - mRNA 192 -- 208@LB@Position - sRNA 1 -- 18@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 9 -- 15@LB@ |
124 |
0.01977 |
0.5155 |
b1920 |
fliY |
-11.21 |
0.054671 |
192 -- 201 |
49 -- 58 |
cystine transporter subunit |
|
_____________191________202\n_____________|__________|\n5'-CCA...CAUUC__________UGAAA...UGC-3'\n______________GGGGUGAAUA\n______________|||||:||:|\n______________CCCCAUUUGU\n3'-UUU...UUUAU__________CUGUA...UCG-5'\n_____________|__________|\n_____________59_________48\n |
195 -- 201 |
49 -- 55 |
-14.4557 kcal/mol |
2.52037 kcal/mol |
0.729386 kcal/mol |
191 202@LB@ | |@LB@5'-CCA...CAUUC UGAAA...UGC-3'@LB@ GGGGUGAAUA@LB@ |||||:||:|@LB@ CCCCAUUUGU@LB@3'-UUU...UUUAU CUGUA...UCG-5'@LB@ | |@LB@ 59 48@LB@@LB@@LB@Energy -11.21 kcal/mol@LB@Hybridization Energy -14.4557 kcal/mol@LB@Unfolding Energy - mRNA 2.52037 kcal/mol@LB@Unfolding Energy - sRNA 0.729386 kcal/mol@LB@@LB@Position - mRNA 192 -- 201@LB@Position - sRNA 49 -- 58@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 49 -- 55@LB@ |
181 |
0.02995 |
0.5424 |
b0601 |
ybdM |
-11.52 |
0.046768 |
198 -- 207 |
55 -- 64 |
Spo0J family protein ParB-like nuclease domain |
|
_____________197________208\n_____________|__________|\n5'-UUG...CGUCA__________AUACU...GCA-3'\n______________GGAAUGGGGG\n______________|:|||:||||\n______________CUUUAUCCCC\n3'-UUU...GCCAA__________AUUUG...UCG-5'\n_____________|__________|\n_____________65_________54\n |
201 -- 207 |
55 -- 61 |
-14.9628 kcal/mol |
3.4127 kcal/mol |
0.0291912 kcal/mol |
197 208@LB@ | |@LB@5'-UUG...CGUCA AUACU...GCA-3'@LB@ GGAAUGGGGG@LB@ |:|||:||||@LB@ CUUUAUCCCC@LB@3'-UUU...GCCAA AUUUG...UCG-5'@LB@ | |@LB@ 65 54@LB@@LB@@LB@Energy -11.52 kcal/mol@LB@Hybridization Energy -14.9628 kcal/mol@LB@Unfolding Energy - mRNA 3.4127 kcal/mol@LB@Unfolding Energy - sRNA 0.0291912 kcal/mol@LB@@LB@Position - mRNA 198 -- 207@LB@Position - sRNA 55 -- 64@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 55 -- 61@LB@ |
137 |
0.02279 |
0.526 |
b1739 |
osmE |
-8.84 |
0.162198 |
202 -- 246 |
21 -- 65 |
osmotically-inducible lipoprotein |
|
_____________201____________________________________________247\n_____________|______________________________________________|\n5'-GAA...GAAUA____CA__AAUAU______A____U______C__C_______U___CCAUG...AGC-3'\n______________UGAA__AG_____GGCAGG_AUUC__GAGUG_AG_GGCGGUA_UAA\n______________||||__||_____::|||:_||||__:|:||_|:_|:|||||_|||\n______________ACUU__UC_____UUGUCU_UAAG__UUUAC_UU_CUGCCAU_AUU\n3'-UUU...GGCCA____UA__CCCAU______G____UC________A_______U___UAUUU...UCG-5'\n_____________|______________________________________________|\n_____________66_____________________________________________20\n |
236 -- 242 |
25 -- 31 |
-25.0909 kcal/mol |
9.03477 kcal/mol |
7.21767 kcal/mol |
201 247@LB@ | |@LB@5'-GAA...GAAUA CA AAUAU A U C C U CCAUG...AGC-3'@LB@ UGAA AG GGCAGG AUUC GAGUG AG GGCGGUA UAA@LB@ |||| || ::|||: |||| :|:|| |: |:||||| |||@LB@ ACUU UC UUGUCU UAAG UUUAC UU CUGCCAU AUU@LB@3'-UUU...GGCCA UA CCCAU G UC A U UAUUU...UCG-5'@LB@ | |@LB@ 66 20@LB@@LB@@LB@Energy -8.84 kcal/mol@LB@Hybridization Energy -25.0909 kcal/mol@LB@Unfolding Energy - mRNA 9.03477 kcal/mol@LB@Unfolding Energy - sRNA 7.21767 kcal/mol@LB@@LB@Position - mRNA 202 -- 246@LB@Position - sRNA 21 -- 65@LB@Position Seed - mRNA 236 -- 242@LB@Position Seed - sRNA 25 -- 31@LB@ |
147 |
0.02463 |
0.526 |
b2830 |
rppH |
-8.72 |
0.170707 |
205 -- 218 |
1 -- 14 |
RNA pyrophosphohydrolase |
|
_____________204____________219\n_____________|______________|\n5'-UUC...GGUGA_______C______UACCG...GGC-3'\n______________UUGAUGA_GAUGGC\n______________||:||||_|||:||\n______________AAUUACU_CUAUCG\n3'-UUU...AUUUC_______A______-5'\n_____________|_____________|\n_____________15____________1\n |
205 -- 211 |
8 -- 14 |
-13.7427 kcal/mol |
4.97796 kcal/mol |
0.0473494 kcal/mol |
204 219@LB@ | |@LB@5'-UUC...GGUGA C UACCG...GGC-3'@LB@ UUGAUGA GAUGGC@LB@ ||:|||| |||:||@LB@ AAUUACU CUAUCG@LB@3'-UUU...AUUUC A -5'@LB@ | |@LB@ 15 1@LB@@LB@@LB@Energy -8.72 kcal/mol@LB@Hybridization Energy -13.7427 kcal/mol@LB@Unfolding Energy - mRNA 4.97796 kcal/mol@LB@Unfolding Energy - sRNA 0.0473494 kcal/mol@LB@@LB@Position - mRNA 205 -- 218@LB@Position - sRNA 1 -- 14@LB@Position Seed - mRNA 205 -- 211@LB@Position Seed - sRNA 8 -- 14@LB@ |
122 |
0.01943 |
0.5155 |
b1842 |
holE |
-10.27 |
0.085496 |
209 -- 257 |
4 -- 63 |
DNA polymerase III theta subunit |
|
_____________208____________________________________________________________258\n_____________|______________________________________________________________|\n5'-GUC...CUGAA____CU__C_____U___U__AA_____________________________G____UC___UUGGC...UGC-3'\n______________GAAU__GG_UAAAC_GGA_CA__CAGAAAUG_____________GAUAAAGU_AAUG__GAU\n______________:|||__||_|||||_:||_||__||||||||_____________:|||||||_||||__|||\n______________UUUA__CC_AUUUG_UCU_GU__GUCUUUAC_____________UUAUUUCA_UUAC__CUA\n3'-UUU...CCAAC____UC__C____________AA________UUACUGCCAUUAU________A____UA___UCG-5'\n_____________|______________________________________________________________|\n_____________64_____________________________________________________________3\n |
241 -- 247 |
14 -- 20 |
-26.5551 kcal/mol |
9.93779 kcal/mol |
6.34398 kcal/mol |
208 258@LB@ | |@LB@5'-GUC...CUGAA CU C U U AA G UC UUGGC...UGC-3'@LB@ GAAU GG UAAAC GGA CA CAGAAAUG GAUAAAGU AAUG GAU@LB@ :||| || ||||| :|| || |||||||| :||||||| |||| |||@LB@ UUUA CC AUUUG UCU GU GUCUUUAC UUAUUUCA UUAC CUA@LB@3'-UUU...CCAAC UC C AA UUACUGCCAUUAU A UA UCG-5'@LB@ | |@LB@ 64 3@LB@@LB@@LB@Energy -10.27 kcal/mol@LB@Hybridization Energy -26.5551 kcal/mol@LB@Unfolding Energy - mRNA 9.93779 kcal/mol@LB@Unfolding Energy - sRNA 6.34398 kcal/mol@LB@@LB@Position - mRNA 209 -- 257@LB@Position - sRNA 4 -- 63@LB@Position Seed - mRNA 241 -- 247@LB@Position Seed - sRNA 14 -- 20@LB@ |
179 |
0.02973 |
0.5424 |
b2812 |
tcdA |
-11.60 |
0.044907 |
209 -- 228 |
1 -- 28 |
tRNA threonylcarbamoyladenosine dehydratase; sulfur acceptor for CsdA |
|
_____________208___________________________229\n_____________|_____________________________|\n5'-GUG...UCUGU_______________________C_____GUCAG...UUU-3'\n______________GGUAAU_________UAGUGAUG_AUGGC\n______________||||||_________||:|||||_||:||\n______________CCAUUA_________AUUACUAC_UAUCG\n3'-UUU...UACUG______UUUAUUUCA______________-5'\n_____________|____________________________|\n_____________29___________________________1\n |
216 -- 222 |
6 -- 12 |
-16.3639 kcal/mol |
3.995 kcal/mol |
0.766821 kcal/mol |
208 229@LB@ | |@LB@5'-GUG...UCUGU C GUCAG...UUU-3'@LB@ GGUAAU UAGUGAUG AUGGC@LB@ |||||| ||:||||| ||:||@LB@ CCAUUA AUUACUAC UAUCG@LB@3'-UUU...UACUG UUUAUUUCA -5'@LB@ | |@LB@ 29 1@LB@@LB@@LB@Energy -11.60 kcal/mol@LB@Hybridization Energy -16.3639 kcal/mol@LB@Unfolding Energy - mRNA 3.995 kcal/mol@LB@Unfolding Energy - sRNA 0.766821 kcal/mol@LB@@LB@Position - mRNA 209 -- 228@LB@Position - sRNA 1 -- 28@LB@Position Seed - mRNA 216 -- 222@LB@Position Seed - sRNA 6 -- 12@LB@ |