26 |
0.0007049 |
0.1051 |
bsu24750 |
yqhB |
-20.67 |
0.002015 |
266 -- 294 |
134 -- 164 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; Product type pm: membrane component' |
|
_____________265_____________________________295\n_____________|_______________________________|\n5'-UUC...CUCAU______________UUUU_____________AAUUUU-3'\n______________UUUGUUAACAGGAU_____CGUUG_CCGUAG\n______________||::|:|||||||:_____|:|||_|||:||\n______________AAGUAGUUGUCCUG_____GUAAC_GGCGUC\n3'-AUU...AUGAG______________UAACU_____A______GUUCA...CAA-5'\n_____________|_______________________________|\n_____________165_____________________________133\n |
273 -- 279 |
151 -- 157 |
-31.5872 kcal/mol |
2.9023 kcal/mol |
8.693 kcal/mol |
265 295@LB@ | |@LB@5'-UUC...CUCAU UUUU AAUUUU-3'@LB@ UUUGUUAACAGGAU CGUUG CCGUAG@LB@ ||::|:|||||||: |:||| |||:||@LB@ AAGUAGUUGUCCUG GUAAC GGCGUC@LB@3'-AUU...AUGAG UAACU A GUUCA...CAA-5'@LB@ | |@LB@ 165 133@LB@@LB@@LB@Energy -20.67 kcal/mol@LB@Hybridization Energy -31.5872 kcal/mol@LB@Unfolding Energy - mRNA 2.9023 kcal/mol@LB@Unfolding Energy - sRNA 8.693 kcal/mol@LB@@LB@Position - mRNA 266 -- 294@LB@Position - sRNA 134 -- 164@LB@Position Seed - mRNA 273 -- 279@LB@Position Seed - sRNA 151 -- 157@LB@ |
27 |
0.0007779 |
0.1059 |
bsu31480 |
yuxJ |
-17.06 |
0.012234 |
48 -- 110 |
4 -- 55 |
MFS transporter |
|
_____________47______________________________________________________________111\n_____________|_______________________________________________________________|\n5'-UGC...AAUUC___U____GACAU___________CUAA____AA____UUUUCCCAGC_____C_________AAAUU...UUG-3'\n______________CCC_UCUC_____UUCUUCAUUUU____AAAU__UGAA__________CGCUU_GUUUCUUUU\n______________|||_||||_____|||::|||||:____||||__||||__________|||||_:||||||||\n______________GGG_AGAG_____AAGGGGUAAAG____UUUA__ACUU__________GCGAA_UAAAGAAAA\n3'-AUU...AGCAU___U____AAU_____________AAAC____A_____UU_____________U_________CAA-5'\n_____________|_______________________________________________________________|\n_____________56______________________________________________________________3\n |
104 -- 110 |
4 -- 10 |
-33.1771 kcal/mol |
7.88293 kcal/mol |
11.7347 kcal/mol |
47 111@LB@ | |@LB@5'-UGC...AAUUC U GACAU CUAA AA UUUUCCCAGC C AAAUU...UUG-3'@LB@ CCC UCUC UUCUUCAUUUU AAAU UGAA CGCUU GUUUCUUUU@LB@ ||| |||| |||::|||||: |||| |||| ||||| :||||||||@LB@ GGG AGAG AAGGGGUAAAG UUUA ACUU GCGAA UAAAGAAAA@LB@3'-AUU...AGCAU U AAU AAAC A UU U CAA-5'@LB@ | |@LB@ 56 3@LB@@LB@@LB@Energy -17.06 kcal/mol@LB@Hybridization Energy -33.1771 kcal/mol@LB@Unfolding Energy - mRNA 7.88293 kcal/mol@LB@Unfolding Energy - sRNA 11.7347 kcal/mol@LB@@LB@Position - mRNA 48 -- 110@LB@Position - sRNA 4 -- 55@LB@Position Seed - mRNA 104 -- 110@LB@Position Seed - sRNA 4 -- 10@LB@ |
29 |
0.000814 |
0.1059 |
bsu35860 |
pgdS |
-7.84 |
0.648005 |
23 -- 34 |
130 -- 140 |
gamma-dl-glutamyl hydrolase |
|
______________23________________________________35\n______________|_________________________________|\n___________5'-________GGAAAUGAAUAAAA___A________AAGAA...AUA-3'\n______________AUUGAUAU______________UCC_GCAGCAGG\n______________|||||:||______________|||_||||||:|\n______________UAACUGUA______________AGG_CGUCGUUC\n3'-AUU...UCCUG________AC________________________AAGGU...CAA-5'\n_____________|__________________________________|\n_____________141________________________________129\n |
28 -- 34 |
130 -- 136 |
-20.8842 kcal/mol |
7.79874 kcal/mol |
6.50607 kcal/mol |
23 35@LB@ | |@LB@ 5'- GGAAAUGAAUAAAA A AAGAA...AUA-3'@LB@ AUUGAUAU UCC GCAGCAGG@LB@ |||||:|| ||| ||||||:|@LB@ UAACUGUA AGG CGUCGUUC@LB@3'-AUU...UCCUG AC AAGGU...CAA-5'@LB@ | |@LB@ 141 129@LB@@LB@@LB@Energy -7.84 kcal/mol@LB@Hybridization Energy -20.8842 kcal/mol@LB@Unfolding Energy - mRNA 7.79874 kcal/mol@LB@Unfolding Energy - sRNA 6.50607 kcal/mol@LB@@LB@Position - mRNA 23 -- 34@LB@Position - sRNA 130 -- 140@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 130 -- 136@LB@ |
30 |
0.0008394 |
0.1059 |
bsu25600 |
comER |
-17.70 |
0.008924 |
72 -- 169 |
82 -- 187 |
ComE operon protein 4 |
|
_____________71__________________________________________________170\n_____________|___________________________________________________|\n5'-AGC...AAUAA____UU____AU__U___UCAACCA_______GUGCA_________C____GUCAU...CAA-3'\n______________UUGC__UCUU__GC_GAU_______AUUCAUC_____UGUUCCCCG_UUUC\n______________||||__||||__||_:|:_______|::||||_____|:||||||:_||||\n______________AACG__AGAA__CG_UUG_______UGGGUAG_____AUAAGGGGU_AAAG\n3'-AUU...GAAGC____UU____C___U___UUAGCA________AGA________________AAACU...CAA-5'\n_____________|___________________________________________________|\n_____________188_________________________________________________81\n |
126 -- 132 |
38 -- 44 |
-31.3225 kcal/mol |
7.58891 kcal/mol |
13.8007 kcal/mol |
71 170@LB@ | |@LB@5'-AGC...AAUAA UU AU U UCAACCA GUGCA C GUCAU...CAA-3'@LB@ UUGC UCUU GC GAU AUUCAUC UGUUCCCCG UUUC@LB@ |||| |||| || :|: |::|||| |:||||||: ||||@LB@ AACG AGAA CG UUG UGGGUAG AUAAGGGGU AAAG@LB@3'-AUU...GAAGC UU C U UUAGCA AGA AAACU...CAA-5'@LB@ | |@LB@ 188 81@LB@@LB@@LB@Energy -17.70 kcal/mol@LB@Hybridization Energy -31.3225 kcal/mol@LB@Unfolding Energy - mRNA 7.58891 kcal/mol@LB@Unfolding Energy - sRNA 13.8007 kcal/mol@LB@@LB@Position - mRNA 72 -- 169@LB@Position - sRNA 82 -- 187@LB@Position Seed - mRNA 126 -- 132@LB@Position Seed - sRNA 38 -- 44@LB@ |
31 |
0.0008564 |
0.1059 |
bsu10290 |
yhfN |
-10.46 |
0.260955 |
32 -- 88 |
131 -- 186 |
metalloprotease YhfN |
|
_____________31__________________89\n_____________|___________________|\n5'-AUG...GCAAG__________G________ACUUG...AAG-3'\n______________UGG_AUUG_C_GCAGCAGG\n______________||:_||||_|_||||||:|\n______________ACU_UAAC_G_CGUCGUUC\n3'-AUU...CUGUA___G____A_G________AAGGU...CAA-5'\n_____________|___________________|\n_____________187_________________130\n |
220 -- 226 |
130 -- 136 |
-18.5522 kcal/mol |
5.78917 kcal/mol |
6.22375 kcal/mol |
31 89@LB@ | |@LB@5'-AUG...GCAAG G ACUUG...AAG-3'@LB@ UGG AUUG C GCAGCAGG@LB@ ||: |||| | ||||||:|@LB@ ACU UAAC G CGUCGUUC@LB@3'-AUU...CUGUA G A G AAGGU...CAA-5'@LB@ | |@LB@ 187 130@LB@@LB@@LB@Energy -10.46 kcal/mol@LB@Hybridization Energy -18.5522 kcal/mol@LB@Unfolding Energy - mRNA 5.78917 kcal/mol@LB@Unfolding Energy - sRNA 6.22375 kcal/mol@LB@@LB@Position - mRNA 32 -- 88@LB@Position - sRNA 131 -- 186@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 130 -- 136@LB@ |
32 |
0.0008744 |
0.1059 |
bsu09430 |
citR |
-15.39 |
0.027619 |
23 -- 103 |
39 -- 111 |
LysR family transcriptional regulator |
|
_____________22______________________________________________________________________________________104\n_____________|_______________________________________________________________________________________|\n5'-UGU...ACGCC________C_A____UAU__C______________UACACA_______CCCUU________CGUAAU__________G_________CUAUC...CCG-3'\n______________CUUUUUCA_C_UCAA___GG_UGAUGGAU_GUUUC______UGUAAUU________UAAUC______GUA_CCAUUU__UAUUCCCC\n______________||||:|||_|_||||___:|_|:|||:||_|:|||______||:|||:________:||||______|||_||||:|__||||||||\n______________GAAAGAGU_G_AGUU___UC_AUUACUUA_CGAAG______ACGUUAG________GUUAG______CAU_GGUAGA__AUAAGGGG\n3'-AUU...ACAGU________A_A__________________C_____CA___________AACCGUUU______________G______GA________UAAAG...CAA-5'\n_____________|_______________________________________________________________________________________|\n_____________112_____________________________________________________________________________________38\n |
97 -- 103 |
39 -- 45 |
-43.1846 kcal/mol |
11.0009 kcal/mol |
20.821 kcal/mol |
22 104@LB@ | |@LB@5'-UGU...ACGCC C A UAU C UACACA CCCUU CGUAAU G CUAUC...CCG-3'@LB@ CUUUUUCA C UCAA GG UGAUGGAU GUUUC UGUAAUU UAAUC GUA CCAUUU UAUUCCCC@LB@ ||||:||| | |||| :| |:|||:|| |:||| ||:|||: :|||| ||| ||||:| ||||||||@LB@ GAAAGAGU G AGUU UC AUUACUUA CGAAG ACGUUAG GUUAG CAU GGUAGA AUAAGGGG@LB@3'-AUU...ACAGU A A C CA AACCGUUU G GA UAAAG...CAA-5'@LB@ | |@LB@ 112 38@LB@@LB@@LB@Energy -15.39 kcal/mol@LB@Hybridization Energy -43.1846 kcal/mol@LB@Unfolding Energy - mRNA 11.0009 kcal/mol@LB@Unfolding Energy - sRNA 20.821 kcal/mol@LB@@LB@Position - mRNA 23 -- 103@LB@Position - sRNA 39 -- 111@LB@Position Seed - mRNA 97 -- 103@LB@Position Seed - sRNA 39 -- 45@LB@ |
33 |
0.0009705 |
0.114 |
bsu20780 |
yopS |
-12.53 |
0.106187 |
15 -- 36 |
34 -- 54 |
XRE family transcriptional regulator |
|
_____________14_______________37\n_____________|________________|\n5'-GUU...ACCUG________C_______UAUGU...AAC-3'\n______________CCAUC_CU_AUUCUCC\n______________|||||_||_||||:||\n______________GGUAG_GA_UAAGGGG\n3'-AUU...GCAUG_____A__A_______UAAAG...CAA-5'\n_____________|________________|\n_____________55_______________33\n |
23 -- 29 |
39 -- 45 |
-17.4753 kcal/mol |
0.463886 kcal/mol |
7.9005 kcal/mol |
14 37@LB@ | |@LB@5'-GUU...ACCUG C UAUGU...AAC-3'@LB@ CCAUC CU AUUCUCC@LB@ ||||| || ||||:||@LB@ GGUAG GA UAAGGGG@LB@3'-AUU...GCAUG A A UAAAG...CAA-5'@LB@ | |@LB@ 55 33@LB@@LB@@LB@Energy -12.53 kcal/mol@LB@Hybridization Energy -17.4753 kcal/mol@LB@Unfolding Energy - mRNA 0.463886 kcal/mol@LB@Unfolding Energy - sRNA 7.9005 kcal/mol@LB@@LB@Position - mRNA 15 -- 36@LB@Position - sRNA 34 -- 54@LB@Position Seed - mRNA 23 -- 29@LB@Position Seed - sRNA 39 -- 45@LB@ |
34 |
0.001006 |
0.1147 |
bsu37620 |
rsfA |
-13.01 |
0.085239 |
64 -- 106 |
124 -- 165 |
prespore-specific transcriptional regulator RsfA |
|
_____________63_________________________________________________107\n_____________|__________________________________________________|\n5'-UUC...ACAUC__A_______UU__A_____UC_____________U_____CCGC_____CCUUC...ACG-3'\n______________AC_CUUCAUU__AC_AGGAU___GAC__UGUUC_C_GCAAG____UCCAU\n______________||_||||||:__||_||||:___|||__|||:|_|_|||||____|||||\n______________UG_GAAGUAG__UG_UCCUG___CUG__ACAGG_G_CGUUC____AGGUA\n3'-AUU...AAAAA__A_______U_________UAA___UA_____C_U_____A________UAUUA...CAA-5'\n_____________|__________________________________________________|\n_____________166________________________________________________123\n |
64 -- 70 |
159 -- 165 |
-31.4528 kcal/mol |
7.34844 kcal/mol |
10.3728 kcal/mol |
63 107@LB@ | |@LB@5'-UUC...ACAUC A UU A UC U CCGC CCUUC...ACG-3'@LB@ AC CUUCAUU AC AGGAU GAC UGUUC C GCAAG UCCAU@LB@ || ||||||: || ||||: ||| |||:| | ||||| |||||@LB@ UG GAAGUAG UG UCCUG CUG ACAGG G CGUUC AGGUA@LB@3'-AUU...AAAAA A U UAA UA C U A UAUUA...CAA-5'@LB@ | |@LB@ 166 123@LB@@LB@@LB@Energy -13.01 kcal/mol@LB@Hybridization Energy -31.4528 kcal/mol@LB@Unfolding Energy - mRNA 7.34844 kcal/mol@LB@Unfolding Energy - sRNA 10.3728 kcal/mol@LB@@LB@Position - mRNA 64 -- 106@LB@Position - sRNA 124 -- 165@LB@Position Seed - mRNA 64 -- 70@LB@Position Seed - sRNA 159 -- 165@LB@ |
35 |
0.001083 |
0.1199 |
bsu38140 |
qoxD |
-14.68 |
0.038800 |
80 -- 211 |
61 -- 193 |
quinol oxidase subunit 4 |
|
_____________79_________________212\n_____________|__________________|\n5'-UUU...GGGUC_____AA___________AUCUG...CAG-3'\n______________UGUAA___UGGCAAACAA\n______________||:||___||||||||||\n______________ACGUU___ACCGUUUGUU\n3'-AUU...AAGCA_____AGA__________AGCAU...CAA-5'\n_____________|__________________|\n_____________194________________60\n |
204 -- 210 |
62 -- 68 |
-16.9019 kcal/mol |
4.29892 kcal/mol |
4.69882 kcal/mol |
79 212@LB@ | |@LB@5'-UUU...GGGUC AA AUCUG...CAG-3'@LB@ UGUAA UGGCAAACAA@LB@ ||:|| ||||||||||@LB@ ACGUU ACCGUUUGUU@LB@3'-AUU...AAGCA AGA AGCAU...CAA-5'@LB@ | |@LB@ 194 60@LB@@LB@@LB@Energy -14.68 kcal/mol@LB@Hybridization Energy -16.9019 kcal/mol@LB@Unfolding Energy - mRNA 4.29892 kcal/mol@LB@Unfolding Energy - sRNA 4.69882 kcal/mol@LB@@LB@Position - mRNA 80 -- 211@LB@Position - sRNA 61 -- 193@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 62 -- 68@LB@ |
36 |
0.001118 |
0.1204 |
bsu17650 |
yncE |
-8.56 |
0.524973 |
291 -- 300 |
61 -- 70 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; Product type h: extrachromosomal origin' |
|
_____________290_______300\n_____________|_________|\n5'-GUA...AUAGG__________-3'\n______________UGGCAAACGA\n______________||||||||:|\n______________ACCGUUUGUU\n3'-AUU...UUAGA__________AGCAU...CAA-5'\n_____________|__________|\n_____________71_________60\n |
294 -- 300 |
61 -- 67 |
-13.5985 kcal/mol |
0.387687 kcal/mol |
4.67716 kcal/mol |
290 300@LB@ | |@LB@5'-GUA...AUAGG -3'@LB@ UGGCAAACGA@LB@ ||||||||:|@LB@ ACCGUUUGUU@LB@3'-AUU...UUAGA AGCAU...CAA-5'@LB@ | |@LB@ 71 60@LB@@LB@@LB@Energy -8.56 kcal/mol@LB@Hybridization Energy -13.5985 kcal/mol@LB@Unfolding Energy - mRNA 0.387687 kcal/mol@LB@Unfolding Energy - sRNA 4.67716 kcal/mol@LB@@LB@Position - mRNA 291 -- 300@LB@Position - sRNA 61 -- 70@LB@Position Seed - mRNA 294 -- 300@LB@Position Seed - sRNA 61 -- 67@LB@ |