| 47 |
0.001488 |
0.1206 |
bsu18480 |
proH |
-12.75 |
0.095888 |
85 -- 112 |
155 -- 184 |
pyrroline-5-carboxylate reductase 1 |
bsu23800 |
_____________84_______________113\n_____________|________________|\n5'-AGC...UUUUC____________U___UAUUU...CAG-3'\n______________UGCUUUUCAUUA_ACA\n______________|:||:|||||:|_|||\n______________AUGAGAAGUAGU_UGU\n3'-AUU...AAAAA________________CCUGU...CAA-5'\n_____________|________________|\n_____________185______________154\n |
102 -- 108 |
158 -- 164 |
-13.4777 kcal/mol |
3.19807 kcal/mol |
1.41616 kcal/mol |
84 113@LB@ | |@LB@5'-AGC...UUUUC U UAUUU...CAG-3'@LB@ UGCUUUUCAUUA ACA@LB@ |:||:|||||:| |||@LB@ AUGAGAAGUAGU UGU@LB@3'-AUU...AAAAA CCUGU...CAA-5'@LB@ | |@LB@ 185 154@LB@@LB@@LB@Energy -12.75 kcal/mol@LB@Hybridization Energy -13.4777 kcal/mol@LB@Unfolding Energy - mRNA 3.19807 kcal/mol@LB@Unfolding Energy - sRNA 1.41616 kcal/mol@LB@@LB@Position - mRNA 85 -- 112@LB@Position - sRNA 155 -- 184@LB@Position Seed - mRNA 102 -- 108@LB@Position Seed - sRNA 158 -- 164@LB@ |
| 104 |
0.004338 |
0.1606 |
bsu08000 |
yfjQ |
-9.77 |
0.342120 |
136 -- 162 |
103 -- 137 |
metal ion transporter YfjQ |
bsu24740 |
_____________135_______________163\n_____________|_________________|\n5'-CAU...AUUAG____A____A_______CUUUU...AUU-3'\n______________GCAG_GAGU_CCGUAUA\n______________||||_:|||_||:||||\n______________CGUC_UUCA_GGUAUAU\n3'-AUU...ACAGG____G____A_______UACAA...CAA-5'\n_____________|_________________|\n_____________138_______________102\n |
146 -- 152 |
121 -- 127 |
-16.4629 kcal/mol |
4.99509 kcal/mol |
3.33887 kcal/mol |
135 163@LB@ | |@LB@5'-CAU...AUUAG A A CUUUU...AUU-3'@LB@ GCAG GAGU CCGUAUA@LB@ |||| :||| ||:||||@LB@ CGUC UUCA GGUAUAU@LB@3'-AUU...ACAGG G A UACAA...CAA-5'@LB@ | |@LB@ 138 102@LB@@LB@@LB@Energy -9.77 kcal/mol@LB@Hybridization Energy -16.4629 kcal/mol@LB@Unfolding Energy - mRNA 4.99509 kcal/mol@LB@Unfolding Energy - sRNA 3.33887 kcal/mol@LB@@LB@Position - mRNA 136 -- 162@LB@Position - sRNA 103 -- 137@LB@Position Seed - mRNA 146 -- 152@LB@Position Seed - sRNA 121 -- 127@LB@ |
| 70 |
0.00232 |
0.1242 |
bsu24010 |
bmr |
-11.41 |
0.174600 |
110 -- 147 |
39 -- 86 |
multidrug resistance protein |
bsu26590 |
_____________109_______148\n_____________|_________|\n5'-CAA...ACAUG_________GCAAA...UGA-3'\n______________CUUGUUCCC\n______________|||:|||||\n______________GAAUAAGGG\n3'-AUU...GUAGA_________GUAAA...CAA-5'\n_____________|_________|\n_____________87________38\n |
82 -- 88 |
40 -- 46 |
-12.1575 kcal/mol |
2.82835 kcal/mol |
0.440898 kcal/mol |
109 148@LB@ | |@LB@5'-CAA...ACAUG GCAAA...UGA-3'@LB@ CUUGUUCCC@LB@ |||:|||||@LB@ GAAUAAGGG@LB@3'-AUU...GUAGA GUAAA...CAA-5'@LB@ | |@LB@ 87 38@LB@@LB@@LB@Energy -11.41 kcal/mol@LB@Hybridization Energy -12.1575 kcal/mol@LB@Unfolding Energy - mRNA 2.82835 kcal/mol@LB@Unfolding Energy - sRNA 0.440898 kcal/mol@LB@@LB@Position - mRNA 110 -- 147@LB@Position - sRNA 39 -- 86@LB@Position Seed - mRNA 82 -- 88@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 42 |
0.001312 |
0.1206 |
bsu39060 |
citH |
-14.25 |
0.047679 |
3 -- 65 |
120 -- 184 |
citrate transporter |
bsu26860 bsu07610 |
_____________2___________________________________________________________66\n_____________|___________________________________________________________|\n5'-GUC...UCCCC_______AAACGAAACAU__U____C_____U_______________UUC_________ACUGC...UUG-3'\n______________CUUUUUA___________UC_ACAG_ACAUU_AC_____CCGUGGCG___UUCAUAUAA\n______________||:||:|___________||_||||_|||||_||_____|||::||:___|:|||||||\n______________GAGAAGU___________AG_UGUC_UGUAA_UG_____GGCGUCGU___AGGUAUAUU\n3'-AUU...AAAAU____________________U____C_____C__UAACA________UCA_________ACAAC...CAA-5'\n_____________|___________________________________________________________|\n_____________185_________________________________________________________119\n |
59 -- 65 |
120 -- 126 |
-29.4475 kcal/mol |
5.73383 kcal/mol |
10.5645 kcal/mol |
2 66@LB@ | |@LB@5'-GUC...UCCCC AAACGAAACAU U C U UUC ACUGC...UUG-3'@LB@ CUUUUUA UC ACAG ACAUU AC CCGUGGCG UUCAUAUAA@LB@ ||:||:| || |||| ||||| || |||::||: |:|||||||@LB@ GAGAAGU AG UGUC UGUAA UG GGCGUCGU AGGUAUAUU@LB@3'-AUU...AAAAU U C C UAACA UCA ACAAC...CAA-5'@LB@ | |@LB@ 185 119@LB@@LB@@LB@Energy -14.25 kcal/mol@LB@Hybridization Energy -29.4475 kcal/mol@LB@Unfolding Energy - mRNA 5.73383 kcal/mol@LB@Unfolding Energy - sRNA 10.5645 kcal/mol@LB@@LB@Position - mRNA 3 -- 65@LB@Position - sRNA 120 -- 184@LB@Position Seed - mRNA 59 -- 65@LB@Position Seed - sRNA 120 -- 126@LB@ |
| 178 |
0.008149 |
0.1751 |
bsu39610 |
yxeB |
-9.68 |
0.354141 |
1 -- 23 |
37 -- 58 |
iron(3+)-hydroxamate-binding protein YxeB |
bsu33320 |
_____________0_______24\n_____________|_______|\n5'-GCA...UGUAA_______AUUUU...CUG-3'\n______________UUCCCAU\n______________|:|||||\n______________AGGGGUA\n3'-AUU...GAAUA_______AAGAA...CAA-5'\n_____________|_______|\n_____________59______36\n |
17 -- 23 |
37 -- 43 |
-9.25042 kcal/mol |
0.0358808 kcal/mol |
2.53706 kcal/mol |
0 24@LB@ | |@LB@5'-GCA...UGUAA AUUUU...CUG-3'@LB@ UUCCCAU@LB@ |:|||||@LB@ AGGGGUA@LB@3'-AUU...GAAUA AAGAA...CAA-5'@LB@ | |@LB@ 59 36@LB@@LB@@LB@Energy -9.68 kcal/mol@LB@Hybridization Energy -9.25042 kcal/mol@LB@Unfolding Energy - mRNA 0.0358808 kcal/mol@LB@Unfolding Energy - sRNA 2.53706 kcal/mol@LB@@LB@Position - mRNA 1 -- 23@LB@Position - sRNA 37 -- 58@LB@Position Seed - mRNA 17 -- 23@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 48 |
0.001494 |
0.1206 |
bsu33660 |
rghRA |
-13.24 |
0.076349 |
28 -- 146 |
39 -- 166 |
HTH-type transcriptional repressor RghR |
bsu33670 |
_____________27_________________________________________________147\n_____________|__________________________________________________|\n5'-UAU...AUUAC_____A____AAC______U___U___U_______A____A_C_______UUUAG...UCU-3'\n______________GGCUU_UGUU____UUUUG_CAA_ACA_UU___CC_GUCU_C_UAUUCCC\n______________|||||_:|||____|:|||_|||_|||_|:___||_:|||_|_|||||||\n______________CCGAA_GCAA____AGAAC_GUU_UGU_AG___GG_UAGA_G_AUAAGGG\n3'-AUU...ACUUA__________CGUU_____C_______U__CAU__G______A_______GUAAA...CAA-5'\n_____________|__________________________________________________|\n_____________167________________________________________________38\n |
139 -- 145 |
40 -- 46 |
-27.8785 kcal/mol |
6.21563 kcal/mol |
10.9223 kcal/mol |
27 147@LB@ | |@LB@5'-UAU...AUUAC A AAC U U U A A C UUUAG...UCU-3'@LB@ GGCUU UGUU UUUUG CAA ACA UU CC GUCU C UAUUCCC@LB@ ||||| :||| |:||| ||| ||| |: || :||| | |||||||@LB@ CCGAA GCAA AGAAC GUU UGU AG GG UAGA G AUAAGGG@LB@3'-AUU...ACUUA CGUU C U CAU G A GUAAA...CAA-5'@LB@ | |@LB@ 167 38@LB@@LB@@LB@Energy -13.24 kcal/mol@LB@Hybridization Energy -27.8785 kcal/mol@LB@Unfolding Energy - mRNA 6.21563 kcal/mol@LB@Unfolding Energy - sRNA 10.9223 kcal/mol@LB@@LB@Position - mRNA 28 -- 146@LB@Position - sRNA 39 -- 166@LB@Position Seed - mRNA 139 -- 145@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 93 |
0.003652 |
0.1515 |
bsu03060 |
lctP |
-13.96 |
0.054584 |
161 -- 227 |
49 -- 115 |
L-lactate permease |
bsu34190 |
_____________160_______________________________________________________________________228\n_____________|_________________________________________________________________________|\n5'-CGG...AAAAA___A___AACCG__A___________AG_______GA____U____G_______________AUG________GGAAA...UGA-3'\n______________GUC_ACU_____CA_CUUUAGAGUAA_____GGCU___UUG_CAAU__UGG_GAGCAGUUGU___AUCCGUUU\n______________|||_|||_____||_|||:|:|||||_____||||___|||_||||__|||_:|:||:|:||___|:||:|:|\n______________CAG_UGA_____GU_GAAGUUUCAUU_____CCGA___AAC_GUUA__ACC_UUUGUUAGCA___UGGGUAGA\n3'-AUU...UACAA_______AAGA___A___________ACUUA____AGC________GA___G_____________________GAAUA...CAA-5'\n_____________|_________________________________________________________________________|\n_____________116_______________________________________________________________________48\n |
220 -- 226 |
50 -- 56 |
-45.5058 kcal/mol |
15.3983 kcal/mol |
19.8755 kcal/mol |
160 228@LB@ | |@LB@5'-CGG...AAAAA A AACCG A AG GA U G AUG GGAAA...UGA-3'@LB@ GUC ACU CA CUUUAGAGUAA GGCU UUG CAAU UGG GAGCAGUUGU AUCCGUUU@LB@ ||| ||| || |||:|:||||| |||| ||| |||| ||| :|:||:|:|| |:||:|:|@LB@ CAG UGA GU GAAGUUUCAUU CCGA AAC GUUA ACC UUUGUUAGCA UGGGUAGA@LB@3'-AUU...UACAA AAGA A ACUUA AGC GA G GAAUA...CAA-5'@LB@ | |@LB@ 116 48@LB@@LB@@LB@Energy -13.96 kcal/mol@LB@Hybridization Energy -45.5058 kcal/mol@LB@Unfolding Energy - mRNA 15.3983 kcal/mol@LB@Unfolding Energy - sRNA 19.8755 kcal/mol@LB@@LB@Position - mRNA 161 -- 227@LB@Position - sRNA 49 -- 115@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 50 -- 56@LB@ |
| 28 |
0.0008121 |
0.1059 |
bsu37450 |
ywhK |
-15.95 |
0.020994 |
89 -- 155 |
41 -- 105 |
Evidence 1a: Function experimentally demonstrated in the studied strain; PubMedId: 12073041; Product type f: factor |
bsu37440 |
_____________88_______________________________________156\n_____________|________________________________________|\n5'-UAU...CCUCA_______GUA_______ACA__U_____U____A______GUUAU...UUC-3'\n______________GCAAUUU___CAAGCAA___CG_UACCC_UC_C_UAUUCU\n______________|||||:|___|||:|||___||_|||||_||_|_|||||:\n______________CGUUAGA___GUUUGUU___GC_AUGGG_AG_G_AUAAGG\n3'-AUU...AGCAA_______ACC_______A__________U__A_A______GGUAA...CAA-5'\n_____________|________________________________________|\n_____________106______________________________________40\n |
127 -- 133 |
61 -- 67 |
-28.9674 kcal/mol |
4.84834 kcal/mol |
9.64723 kcal/mol |
88 156@LB@ | |@LB@5'-UAU...CCUCA GUA ACA U U A GUUAU...UUC-3'@LB@ GCAAUUU CAAGCAA CG UACCC UC C UAUUCU@LB@ |||||:| |||:||| || ||||| || | |||||:@LB@ CGUUAGA GUUUGUU GC AUGGG AG G AUAAGG@LB@3'-AUU...AGCAA ACC A U A A GGUAA...CAA-5'@LB@ | |@LB@ 106 40@LB@@LB@@LB@Energy -15.95 kcal/mol@LB@Hybridization Energy -28.9674 kcal/mol@LB@Unfolding Energy - mRNA 4.84834 kcal/mol@LB@Unfolding Energy - sRNA 9.64723 kcal/mol@LB@@LB@Position - mRNA 89 -- 155@LB@Position - sRNA 41 -- 105@LB@Position Seed - mRNA 127 -- 133@LB@Position Seed - sRNA 61 -- 67@LB@ |
| 141 |
0.006569 |
0.1741 |
bsu19520 |
yojA |
-12.26 |
0.119762 |
158 -- 180 |
120 -- 146 |
permease YojA |
bsu40070 |
_____________157_________________________________________________________181\n_____________|___________________________________________________________|\n5'-GGU...GCUUU__G________________GAAAAGCGCCAAA_________________AA________AACAC...UUU-3'\n______________CU_UUCAUC__UAGG_CAU_____________ACAUUGUC____GCGAG__UCAUAUAA\n______________||_||||||__:|||_|||_____________||||||||____||:||__:|||||||\n______________GA_AAGUAG__GUCC_GUA_____________UGUAACAG____CGUUC__GGUAUAUU\n3'-AUU...AAAAU__G______UU____U___AC___________________GCGU_____AA________ACAAC...CAA-5'\n_____________|___________________________________________________________|\n_____________147_________________________________________________________119\n |
174 -- 180 |
120 -- 126 |
-32.1826 kcal/mol |
10.1468 kcal/mol |
10.5645 kcal/mol |
157 181@LB@ | |@LB@5'-GGU...GCUUU G GAAAAGCGCCAAA AA AACAC...UUU-3'@LB@ CU UUCAUC UAGG CAU ACAUUGUC GCGAG UCAUAUAA@LB@ || |||||| :||| ||| |||||||| ||:|| :|||||||@LB@ GA AAGUAG GUCC GUA UGUAACAG CGUUC GGUAUAUU@LB@3'-AUU...AAAAU G UU U AC GCGU AA ACAAC...CAA-5'@LB@ | |@LB@ 147 119@LB@@LB@@LB@Energy -12.26 kcal/mol@LB@Hybridization Energy -32.1826 kcal/mol@LB@Unfolding Energy - mRNA 10.1468 kcal/mol@LB@Unfolding Energy - sRNA 10.5645 kcal/mol@LB@@LB@Position - mRNA 158 -- 180@LB@Position - sRNA 120 -- 146@LB@Position Seed - mRNA 174 -- 180@LB@Position Seed - sRNA 120 -- 126@LB@ |
| 2 |
6.323e-05 |
0.08823 |
bsu13370 |
ykoQ |
-21.23 |
0.001523 |
8 -- 146 |
40 -- 170 |
metallophosphoesterase |
|
_____________7_______________________________________________________________________________________________________________________________________________________147\n_____________|_______________________________________________________________________________________________________________________________________________________|\n____5'-CGUAACA______ACA____C__UUGU___UC____________U_____U_____GCCUC_________AAA_______A__CCUUUUCC__________CAAAU__U__AUCAUAU______C___UUUUCA__________ACCCAUUA______GCUAU...CAA-3'\n______________UUGCUU___CAUC_AU____UAU__UGAC____UCCG_CGGCA_GUUCU_____AUG_UGUCA____UUUAUU_UC______________CUUC_____CA_UC_______GACAAU_CGU______ACCUGUCUCU________AUUCCC\n______________||:||:___||||_|:____:||__||||____||||_|:|||_||||:_____|||_|||||____:|:||:_||______________||||_____||_||_______:|||||_|||______|||::|||||________||||||\n______________AAUGAG___GUAG_UG____GUA__ACUG____AGGC_GUCGU_CAAGG_____UAC_ACAGU____GAGUAG_AG______________GAAG_____GU_AG_______UUGUUA_GCA______UGGGUAGAGA________UAAGGG\n3'-AUU...AAAAA______AA_____U__UCCU_________UAAC__________U_____UAUAU___A_____GAAA______A__UUUCAUUACUUACC____CAAC___U__AACCGU___________________________A_____________GUAAA...CAA-5'\n_____________|_______________________________________________________________________________________________________________________________________________________|\n_____________171_____________________________________________________________________________________________________________________________________________________39\n |
126 -- 132 |
47 -- 53 |
-61.8379 kcal/mol |
13.5948 kcal/mol |
30.7766 kcal/mol |
7 147@LB@ | |@LB@ 5'-CGUAACA ACA C UUGU UC U U GCCUC AAA A CCUUUUCC CAAAU U AUCAUAU C UUUUCA ACCCAUUA GCUAU...CAA-3'@LB@ UUGCUU CAUC AU UAU UGAC UCCG CGGCA GUUCU AUG UGUCA UUUAUU UC CUUC CA UC GACAAU CGU ACCUGUCUCU AUUCCC@LB@ ||:||: |||| |: :|| |||| |||| |:||| ||||: ||| ||||| :|:||: || |||| || || :||||| ||| |||::||||| ||||||@LB@ AAUGAG GUAG UG GUA ACUG AGGC GUCGU CAAGG UAC ACAGU GAGUAG AG GAAG GU AG UUGUUA GCA UGGGUAGAGA UAAGGG@LB@3'-AUU...AAAAA AA U UCCU UAAC U UAUAU A GAAA A UUUCAUUACUUACC CAAC U AACCGU A GUAAA...CAA-5'@LB@ | |@LB@ 171 39@LB@@LB@@LB@Energy -21.23 kcal/mol@LB@Hybridization Energy -61.8379 kcal/mol@LB@Unfolding Energy - mRNA 13.5948 kcal/mol@LB@Unfolding Energy - sRNA 30.7766 kcal/mol@LB@@LB@Position - mRNA 8 -- 146@LB@Position - sRNA 40 -- 170@LB@Position Seed - mRNA 126 -- 132@LB@Position Seed - sRNA 47 -- 53@LB@ |
