115 |
0.005245 |
0.1741 |
bsu07690 |
yflG |
-14.30 |
0.046489 |
29 -- 56 |
32 -- 57 |
methionine aminopeptidase 2 |
|
_____________28___________________________57\n_____________|____________________________|\n5'-UUC...AAGCA________CCC__C__A____U______CAAAU...GCA-3'\n______________UACCCAUC___CU_AU_CCCU_UUUUUU\n______________||||||||___||_||_|||:_|||:||\n______________AUGGGUAG___GA_UA_GGGG_AAAGAA\n3'-AUU...UUAGC________A____A__A____U______ACUUU...CAA-5'\n_____________|____________________________|\n_____________58___________________________31\n |
30 -- 36 |
50 -- 56 |
-21.2542 kcal/mol |
0.575621 kcal/mol |
9.1585 kcal/mol |
28 57@LB@ | |@LB@5'-UUC...AAGCA CCC C A U CAAAU...GCA-3'@LB@ UACCCAUC CU AU CCCU UUUUUU@LB@ |||||||| || || |||: |||:||@LB@ AUGGGUAG GA UA GGGG AAAGAA@LB@3'-AUU...UUAGC A A A U ACUUU...CAA-5'@LB@ | |@LB@ 58 31@LB@@LB@@LB@Energy -14.30 kcal/mol@LB@Hybridization Energy -21.2542 kcal/mol@LB@Unfolding Energy - mRNA 0.575621 kcal/mol@LB@Unfolding Energy - sRNA 9.1585 kcal/mol@LB@@LB@Position - mRNA 29 -- 56@LB@Position - sRNA 32 -- 57@LB@Position Seed - mRNA 30 -- 36@LB@Position Seed - sRNA 50 -- 56@LB@ |
116 |
0.005334 |
0.1741 |
bsu30510 |
ytpA |
-10.58 |
0.247824 |
123 -- 177 |
35 -- 87 |
phospholipase YtpA |
|
_____________122______________________________________________________178\n_____________|________________________________________________________|\n5'-AUU...AUAUC______G____C_UUAUAAG_______C__AAG___________CU__________AAAUU...GGC-3'\n______________UGGCUU_UGUU_C_______GGUAGAU_AU___AUUCAUC_CUU__UUCUCUAUUU\n______________||||||_:|||_|_______||:|:|:_||___|::||||_|||__|||:|:||||\n______________ACCGAA_GCAA_G_______CCGUUUG_UA___UGGGUAG_GAA__AAGGGGUAAA\n3'-AUU...UACUU___________C_UUAGAA________U__GCA_______A___U___________GAAAC...CAA-5'\n_____________|________________________________________________________|\n_____________88_______________________________________________________34\n |
171 -- 177 |
35 -- 41 |
-35.4104 kcal/mol |
13.324 kcal/mol |
14.1583 kcal/mol |
122 178@LB@ | |@LB@5'-AUU...AUAUC G C UUAUAAG C AAG CU AAAUU...GGC-3'@LB@ UGGCUU UGUU C GGUAGAU AU AUUCAUC CUU UUCUCUAUUU@LB@ |||||| :||| | ||:|:|: || |::|||| ||| |||:|:||||@LB@ ACCGAA GCAA G CCGUUUG UA UGGGUAG GAA AAGGGGUAAA@LB@3'-AUU...UACUU C UUAGAA U GCA A U GAAAC...CAA-5'@LB@ | |@LB@ 88 34@LB@@LB@@LB@Energy -10.58 kcal/mol@LB@Hybridization Energy -35.4104 kcal/mol@LB@Unfolding Energy - mRNA 13.324 kcal/mol@LB@Unfolding Energy - sRNA 14.1583 kcal/mol@LB@@LB@Position - mRNA 123 -- 177@LB@Position - sRNA 35 -- 87@LB@Position Seed - mRNA 171 -- 177@LB@Position Seed - sRNA 35 -- 41@LB@ |
117 |
0.005342 |
0.1741 |
bsu33050 |
gerAA |
-9.34 |
0.402150 |
52 -- 63 |
38 -- 49 |
spore germination protein A1 |
|
_____________51___________64\n_____________|____________|\n5'-UAA...UUUCU____________GCUAG...UGC-3'\n______________UCUUGUUUUCCA\n______________||||:||::|||\n______________AGAAUAAGGGGU\n3'-AUU...GGUAG____________AAAGA...CAA-5'\n_____________|____________|\n_____________50___________37\n |
57 -- 63 |
38 -- 44 |
-12.8318 kcal/mol |
1.31908 kcal/mol |
4.13482 kcal/mol |
51 64@LB@ | |@LB@5'-UAA...UUUCU GCUAG...UGC-3'@LB@ UCUUGUUUUCCA@LB@ ||||:||::|||@LB@ AGAAUAAGGGGU@LB@3'-AUU...GGUAG AAAGA...CAA-5'@LB@ | |@LB@ 50 37@LB@@LB@@LB@Energy -9.34 kcal/mol@LB@Hybridization Energy -12.8318 kcal/mol@LB@Unfolding Energy - mRNA 1.31908 kcal/mol@LB@Unfolding Energy - sRNA 4.13482 kcal/mol@LB@@LB@Position - mRNA 52 -- 63@LB@Position - sRNA 38 -- 49@LB@Position Seed - mRNA 57 -- 63@LB@Position Seed - sRNA 38 -- 44@LB@ |
118 |
0.005364 |
0.1741 |
bsu21980 |
ypdP |
-14.81 |
0.036422 |
190 -- 236 |
72 -- 112 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; PubMedId: 15849754 16850406; Product type pm: membrane component' |
|
_____________189_______________________________________________237\n_____________|_________________________________________________|\n5'-AAC...AGGAA_____________GUUUAAUAAUUC__UU___________U________AUUCA...GGA-3'\n______________GCUUUUUCAUCUU____________GU__UGGAU__CUUU_UUGCGAUC\n______________:||||:|||||||____________||__||:||__|||:_||||:|||\n______________UGAAAGAGUAGAA____________CA__ACUUA__GAAG_AACGUUAG\n3'-AUU...AACAG_____________GUUU__________UU_____CC____C________AACCG...CAA-5'\n_____________|_________________________________________________|\n_____________113_______________________________________________71\n |
230 -- 236 |
72 -- 78 |
-29.9578 kcal/mol |
5.88063 kcal/mol |
12.3236 kcal/mol |
189 237@LB@ | |@LB@5'-AAC...AGGAA GUUUAAUAAUUC UU U AUUCA...GGA-3'@LB@ GCUUUUUCAUCUU GU UGGAU CUUU UUGCGAUC@LB@ :||||:||||||| || ||:|| |||: ||||:|||@LB@ UGAAAGAGUAGAA CA ACUUA GAAG AACGUUAG@LB@3'-AUU...AACAG GUUU UU CC C AACCG...CAA-5'@LB@ | |@LB@ 113 71@LB@@LB@@LB@Energy -14.81 kcal/mol@LB@Hybridization Energy -29.9578 kcal/mol@LB@Unfolding Energy - mRNA 5.88063 kcal/mol@LB@Unfolding Energy - sRNA 12.3236 kcal/mol@LB@@LB@Position - mRNA 190 -- 236@LB@Position - sRNA 72 -- 112@LB@Position Seed - mRNA 230 -- 236@LB@Position Seed - sRNA 72 -- 78@LB@ |
119 |
0.005369 |
0.1741 |
bsu33250 |
yvrL |
-8.38 |
0.555183 |
10 -- 36 |
76 -- 105 |
membrane-bound negative regulator YvrL |
|
_____________9__________37\n_____________|__________|\n5'-AUG...CCUUC__________UUGCG...AUA-3'\n______________AAAACGCUUA\n______________||||||||||\n______________UUUUGCGAAU\n3'-AUU...UAAAC__________UAAAG...CAA-5'\n_____________|__________|\n_____________106________75\n |
224 -- 230 |
13 -- 19 |
-10.8458 kcal/mol |
2.09283 kcal/mol |
3.31287 kcal/mol |
9 37@LB@ | |@LB@5'-AUG...CCUUC UUGCG...AUA-3'@LB@ AAAACGCUUA@LB@ ||||||||||@LB@ UUUUGCGAAU@LB@3'-AUU...UAAAC UAAAG...CAA-5'@LB@ | |@LB@ 106 75@LB@@LB@@LB@Energy -8.38 kcal/mol@LB@Hybridization Energy -10.8458 kcal/mol@LB@Unfolding Energy - mRNA 2.09283 kcal/mol@LB@Unfolding Energy - sRNA 3.31287 kcal/mol@LB@@LB@Position - mRNA 10 -- 36@LB@Position - sRNA 76 -- 105@LB@Position Seed - mRNA 224 -- 230@LB@Position Seed - sRNA 13 -- 19@LB@ |
120 |
0.005453 |
0.1741 |
bsu38750 |
cydB |
-16.17 |
0.018868 |
36 -- 121 |
37 -- 136 |
cytochrome d ubiquinol oxidase subunit 2 |
|
_____________35____________________________________________________________________________________________________________122\n_____________|_____________________________________________________________________________________________________________|\n5'-AAU...CGUAA___________________________C__AA_____GCA_____U______UAC___AU__________________________________U________A_____GAGAU...CCC-3'\n______________CAGCGGGUUCC________UUGUUAUU_UC__UCAUC___UUCGG_GUGAUG___AUG____________UCUUGGU__GCA__C_UGCUUGUC_UCUUGUUU_UCCGU\n______________||||::|||||________||||:|:|_||__|||||___|||::_||:|||___|||____________||||||:__:||__|_|:|:::||_||||:||:_:||:|\n______________GUCGUUCAAGG________AACAGUGA_AG__AGUAG___AAGUU_CAUUAC___UAC____________AGAACCG__UGU__G_AUGGGUAG_AGAAUAAG_GGGUA\n3'-AUU...CAGGC___________UAUAUUAC________A_________________U______U_____CGAAGCAACGUU_______UU___UA_C_______________________AAGAA...CAA-5'\n_____________|_____________________________________________________________________________________________________________|\n_____________137___________________________________________________________________________________________________________36\n |
109 -- 115 |
42 -- 48 |
-60.5971 kcal/mol |
23.6183 kcal/mol |
24.7809 kcal/mol |
35 122@LB@ | |@LB@5'-AAU...CGUAA C AA GCA U UAC AU U A GAGAU...CCC-3'@LB@ CAGCGGGUUCC UUGUUAUU UC UCAUC UUCGG GUGAUG AUG UCUUGGU GCA C UGCUUGUC UCUUGUUU UCCGU@LB@ ||||::||||| ||||:|:| || ||||| |||:: ||:||| ||| ||||||: :|| | |:|:::|| ||||:||: :||:|@LB@ GUCGUUCAAGG AACAGUGA AG AGUAG AAGUU CAUUAC UAC AGAACCG UGU G AUGGGUAG AGAAUAAG GGGUA@LB@3'-AUU...CAGGC UAUAUUAC A U U CGAAGCAACGUU UU UA C AAGAA...CAA-5'@LB@ | |@LB@ 137 36@LB@@LB@@LB@Energy -16.17 kcal/mol@LB@Hybridization Energy -60.5971 kcal/mol@LB@Unfolding Energy - mRNA 23.6183 kcal/mol@LB@Unfolding Energy - sRNA 24.7809 kcal/mol@LB@@LB@Position - mRNA 36 -- 121@LB@Position - sRNA 37 -- 136@LB@Position Seed - mRNA 109 -- 115@LB@Position Seed - sRNA 42 -- 48@LB@ |
121 |
0.005491 |
0.1741 |
bsu40190 |
fbp |
-16.50 |
0.016068 |
67 -- 83 |
53 -- 69 |
fructose-1 6-bisphosphatase |
|
_____________66________________84\n_____________|_________________|\n5'-AAA...AAUGA___________U_____UAAAC...GCA-3'\n______________GGCAAACAAUC_UACCC\n______________|||||||||||_|||||\n______________CCGUUUGUUAG_AUGGG\n3'-AUU...UAGAA___________C_____UAGAG...CAA-5'\n_____________|_________________|\n_____________70________________52\n |
71 -- 77 |
59 -- 65 |
-25.6398 kcal/mol |
2.55798 kcal/mol |
7.79863 kcal/mol |
66 84@LB@ | |@LB@5'-AAA...AAUGA U UAAAC...GCA-3'@LB@ GGCAAACAAUC UACCC@LB@ ||||||||||| |||||@LB@ CCGUUUGUUAG AUGGG@LB@3'-AUU...UAGAA C UAGAG...CAA-5'@LB@ | |@LB@ 70 52@LB@@LB@@LB@Energy -16.50 kcal/mol@LB@Hybridization Energy -25.6398 kcal/mol@LB@Unfolding Energy - mRNA 2.55798 kcal/mol@LB@Unfolding Energy - sRNA 7.79863 kcal/mol@LB@@LB@Position - mRNA 67 -- 83@LB@Position - sRNA 53 -- 69@LB@Position Seed - mRNA 71 -- 77@LB@Position Seed - sRNA 59 -- 65@LB@ |
122 |
0.005613 |
0.1741 |
bsu19770 |
cgeC |
-14.56 |
0.041162 |
73 -- 119 |
6 -- 59 |
spore maturation protein CgeC |
|
_____________72_______________________________________________________120\n_____________|________________________________________________________|\n5'-CAC...AACGC_______G____AUUU___A_______AAG__________________________AAUGG...AAG-3'\n______________CGUACCU_AUCU____UUC_UCUAUUU___________GAAAAUGCU_GAUUUUUU\n______________||||||:_||||____|||_:|:||||___________|||||:|||_:||||:||\n______________GCAUGGG_UAGA____AAG_GGGUAAA___________CUUUUGCGA_UUAAAGAA\n3'-AUU...UGUUA____________GAAU___________GAAACUUUAAA_________A________AACAA-5'\n_____________|________________________________________________________|\n_____________60_______________________________________________________5\n |
105 -- 111 |
15 -- 21 |
-32.5895 kcal/mol |
8.55003 kcal/mol |
11.8347 kcal/mol |
72 120@LB@ | |@LB@5'-CAC...AACGC G AUUU A AAG AAUGG...AAG-3'@LB@ CGUACCU AUCU UUC UCUAUUU GAAAAUGCU GAUUUUUU@LB@ ||||||: |||| ||| :|:|||| |||||:||| :||||:||@LB@ GCAUGGG UAGA AAG GGGUAAA CUUUUGCGA UUAAAGAA@LB@3'-AUU...UGUUA GAAU GAAACUUUAAA A AACAA-5'@LB@ | |@LB@ 60 5@LB@@LB@@LB@Energy -14.56 kcal/mol@LB@Hybridization Energy -32.5895 kcal/mol@LB@Unfolding Energy - mRNA 8.55003 kcal/mol@LB@Unfolding Energy - sRNA 11.8347 kcal/mol@LB@@LB@Position - mRNA 73 -- 119@LB@Position - sRNA 6 -- 59@LB@Position Seed - mRNA 105 -- 111@LB@Position Seed - sRNA 15 -- 21@LB@ |
123 |
0.005649 |
0.1741 |
bsu37530 |
ywhC |
-10.56 |
0.250674 |
18 -- 29 |
105 -- 116 |
zinc metalloprotease YwhC |
|
_____________17___________30\n_____________|____________|\n5'-GUU...GCUUC____________GACAA...UCG-3'\n______________UGUUACUUUCUC\n______________|||:||||||||\n______________ACAGUGAAAGAG\n3'-AUU...UUACA____________UAGAA...CAA-5'\n_____________|____________|\n_____________117__________104\n |
23 -- 29 |
105 -- 111 |
-16.5612 kcal/mol |
1.98074 kcal/mol |
5.11978 kcal/mol |
17 30@LB@ | |@LB@5'-GUU...GCUUC GACAA...UCG-3'@LB@ UGUUACUUUCUC@LB@ |||:||||||||@LB@ ACAGUGAAAGAG@LB@3'-AUU...UUACA UAGAA...CAA-5'@LB@ | |@LB@ 117 104@LB@@LB@@LB@Energy -10.56 kcal/mol@LB@Hybridization Energy -16.5612 kcal/mol@LB@Unfolding Energy - mRNA 1.98074 kcal/mol@LB@Unfolding Energy - sRNA 5.11978 kcal/mol@LB@@LB@Position - mRNA 18 -- 29@LB@Position - sRNA 105 -- 116@LB@Position Seed - mRNA 23 -- 29@LB@Position Seed - sRNA 105 -- 111@LB@ |
124 |
0.005654 |
0.1741 |
bsu24680 |
comGF |
-17.71 |
0.008856 |
105 -- 249 |
40 -- 187 |
ComG operon protein 6 |
|
_____________104_____________________________________250\n_____________|_______________________________________|\n5'-UGU...UUUUG______A_______A_________GUU__A_A_______AAUGG...UAG-3'\n______________UC_UCG_CAGCAGG_ACA_UGACG___UC_C_CAGCAGG\n______________||_||:_||:||||_|||_||||:___||_|_|||||:|\n______________AG_AGU_GUUGUCC_UGU_ACUGU___AG_G_GUCGUUC\n3'-AUU...AAAUG__A___A___________A_____AAC____C_______AAGGU...CAA-5'\n_____________|_______________________________________|\n_____________188_____________________________________39\n |
276 -- 282 |
130 -- 136 |
-32.8645 kcal/mol |
8.22307 kcal/mol |
10.1234 kcal/mol |
104 250@LB@ | |@LB@5'-UGU...UUUUG A A GUU A A AAUGG...UAG-3'@LB@ UC UCG CAGCAGG ACA UGACG UC C CAGCAGG@LB@ || ||: ||:|||| ||| ||||: || | |||||:|@LB@ AG AGU GUUGUCC UGU ACUGU AG G GUCGUUC@LB@3'-AUU...AAAUG A A A AAC C AAGGU...CAA-5'@LB@ | |@LB@ 188 39@LB@@LB@@LB@Energy -17.71 kcal/mol@LB@Hybridization Energy -32.8645 kcal/mol@LB@Unfolding Energy - mRNA 8.22307 kcal/mol@LB@Unfolding Energy - sRNA 10.1234 kcal/mol@LB@@LB@Position - mRNA 105 -- 249@LB@Position - sRNA 40 -- 187@LB@Position Seed - mRNA 276 -- 282@LB@Position Seed - sRNA 130 -- 136@LB@ |