| 180 |
0.008222 |
0.1751 |
bsu14560 |
def |
-9.11 |
0.436669 |
135 -- 145 |
75 -- 85 |
peptide deformylase |
|
_____________134_________146\n_____________|___________|\n5'-UGG...CAUUC___________CCUUU...AGC-3'\n______________GUUUCGUUGCA\n______________|:|||||||||\n______________CGAAGCAACGU\n3'-AUU...CUUAC___________UAGAA...CAA-5'\n_____________|___________|\n_____________86__________74\n |
139 -- 145 |
75 -- 81 |
-16.022 kcal/mol |
4.21993 kcal/mol |
4.54464 kcal/mol |
134 146@LB@ | |@LB@5'-UGG...CAUUC CCUUU...AGC-3'@LB@ GUUUCGUUGCA@LB@ |:|||||||||@LB@ CGAAGCAACGU@LB@3'-AUU...CUUAC UAGAA...CAA-5'@LB@ | |@LB@ 86 74@LB@@LB@@LB@Energy -9.11 kcal/mol@LB@Hybridization Energy -16.022 kcal/mol@LB@Unfolding Energy - mRNA 4.21993 kcal/mol@LB@Unfolding Energy - sRNA 4.54464 kcal/mol@LB@@LB@Position - mRNA 135 -- 145@LB@Position - sRNA 75 -- 85@LB@Position Seed - mRNA 139 -- 145@LB@Position Seed - sRNA 75 -- 81@LB@ |
| 181 |
0.008392 |
0.1751 |
bsu19600 |
yodH |
-10.70 |
0.236480 |
130 -- 154 |
156 -- 183 |
methyltransferase |
|
_____________129______________155\n_____________|________________|\n5'-AAC...CUUCU____________A___CUAUG...CCU-3'\n______________UUUGCUUUUCAU_AAC\n______________|||:||:|||||_|||\n______________AAAUGAGAAGUA_UUG\n3'-AUU...AAAAA____________G___UCCUG...CAA-5'\n_____________|________________|\n_____________184______________155\n |
144 -- 150 |
160 -- 166 |
-13.2566 kcal/mol |
3.14685 kcal/mol |
1.41519 kcal/mol |
129 155@LB@ | |@LB@5'-AAC...CUUCU A CUAUG...CCU-3'@LB@ UUUGCUUUUCAU AAC@LB@ |||:||:||||| |||@LB@ AAAUGAGAAGUA UUG@LB@3'-AUU...AAAAA G UCCUG...CAA-5'@LB@ | |@LB@ 184 155@LB@@LB@@LB@Energy -10.70 kcal/mol@LB@Hybridization Energy -13.2566 kcal/mol@LB@Unfolding Energy - mRNA 3.14685 kcal/mol@LB@Unfolding Energy - sRNA 1.41519 kcal/mol@LB@@LB@Position - mRNA 130 -- 154@LB@Position - sRNA 156 -- 183@LB@Position Seed - mRNA 144 -- 150@LB@Position Seed - sRNA 160 -- 166@LB@ |
| 182 |
0.008397 |
0.1751 |
bsu38410 |
sacX |
-16.96 |
0.012854 |
69 -- 151 |
101 -- 169 |
negative regulator of SacY activity |
|
_____________68_____________________________________________________________________________________152\n_____________|______________________________________________________________________________________|\n5'-ACA...UCUCA_____CG_________C_______U________AUUUU____C___AUUUCUCACUUUU_____UU____A______AC_______UUGAU...UAA-3'\n______________UGCUC__UCGUCGACG_GGGCAUU____UUGUC_____CAGC_GGU_____________UUCAU____UG_UUGUCA__UUUUCAU\n______________|:|||__||:||:||:_||:||||____|||||_____||||_:||_____________|:|||____||_||||||__||:||||\n______________AUGAG__AGUAGUUGU_CCUGUAA____AACAG_____GUCG_UCA_____________AGGUA____AC_AACAGU__AAGAGUA\n3'-AUU...AAAAA_____A__________________CUGU_____GC_______U_____________________UAUU_________GA_______GAAGU...CAA-5'\n_____________|______________________________________________________________________________________|\n_____________170____________________________________________________________________________________100\n |
143 -- 149 |
103 -- 109 |
-47.5037 kcal/mol |
18.4019 kcal/mol |
14.5039 kcal/mol |
68 152@LB@ | |@LB@5'-ACA...UCUCA CG C U AUUUU C AUUUCUCACUUUU UU A AC UUGAU...UAA-3'@LB@ UGCUC UCGUCGACG GGGCAUU UUGUC CAGC GGU UUCAU UG UUGUCA UUUUCAU@LB@ |:||| ||:||:||: ||:|||| ||||| |||| :|| |:||| || |||||| ||:||||@LB@ AUGAG AGUAGUUGU CCUGUAA AACAG GUCG UCA AGGUA AC AACAGU AAGAGUA@LB@3'-AUU...AAAAA A CUGU GC U UAUU GA GAAGU...CAA-5'@LB@ | |@LB@ 170 100@LB@@LB@@LB@Energy -16.96 kcal/mol@LB@Hybridization Energy -47.5037 kcal/mol@LB@Unfolding Energy - mRNA 18.4019 kcal/mol@LB@Unfolding Energy - sRNA 14.5039 kcal/mol@LB@@LB@Position - mRNA 69 -- 151@LB@Position - sRNA 101 -- 169@LB@Position Seed - mRNA 143 -- 149@LB@Position Seed - sRNA 103 -- 109@LB@ |
| 183 |
0.008402 |
0.1751 |
bsu03010 |
amhX |
-13.44 |
0.069669 |
23 -- 92 |
7 -- 86 |
amidohydrolase AmhX |
|
_____________22_______________________________________________________________________________________93\n_____________|________________________________________________________________________________________|\n5'-AAA...UCUUA____G____U______GC____________________AU___GAUCCA__________________________A______UA____GAAUA...CUU-3'\n______________GGCU_UGUU_CGG_CU__UGGCA________UACUCAU__UUC______UCCCC___UCU_____GUUUGAAAAU__UUAAU__UUCU\n______________||||_:|||_|::_||__|||||________|||:|||__:||______|||||___|||_____:||||||||:__|||||__||||\n______________CCGA_GCAA_GUU_GA__ACCGU________AUGGGUA__GAG______AGGGG___AGA_____UAAACUUUUG__AAUUA__AAGA\n3'-AUU...ACUUA____A____C___A_________UUGUUAGC____________AAUA_______UAA___AACUU__________CG___________AAACAA-5'\n_____________|________________________________________________________________________________________|\n_____________87_______________________________________________________________________________________6\n |
45 -- 51 |
51 -- 57 |
-41.3184 kcal/mol |
11.5757 kcal/mol |
17.8015 kcal/mol |
22 93@LB@ | |@LB@5'-AAA...UCUUA G U GC AU GAUCCA A UA GAAUA...CUU-3'@LB@ GGCU UGUU CGG CU UGGCA UACUCAU UUC UCCCC UCU GUUUGAAAAU UUAAU UUCU@LB@ |||| :||| |:: || ||||| |||:||| :|| ||||| ||| :||||||||: ||||| ||||@LB@ CCGA GCAA GUU GA ACCGU AUGGGUA GAG AGGGG AGA UAAACUUUUG AAUUA AAGA@LB@3'-AUU...ACUUA A C A UUGUUAGC AAUA UAA AACUU CG AAACAA-5'@LB@ | |@LB@ 87 6@LB@@LB@@LB@Energy -13.44 kcal/mol@LB@Hybridization Energy -41.3184 kcal/mol@LB@Unfolding Energy - mRNA 11.5757 kcal/mol@LB@Unfolding Energy - sRNA 17.8015 kcal/mol@LB@@LB@Position - mRNA 23 -- 92@LB@Position - sRNA 7 -- 86@LB@Position Seed - mRNA 45 -- 51@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 184 |
0.008461 |
0.1751 |
bsu09120 |
dgcK |
-13.04 |
0.083992 |
38 -- 184 |
37 -- 168 |
diguanylate cyclase |
|
_____________37______________________________________185\n_____________|_______________________________________|\n5'-CAU...AAGUC___AA_______AAACUCUCCCUUCAA____________UACUA...GCA-3'\n______________UCC__AGCAGGU________________AUUUUCUCAUU\n______________|||__||||:||________________|:||||||||:\n______________AGG__UCGUUCA________________UGAAAGAGUAG\n3'-AUU...GUAAC___CG_______AGGUAUAUUACAACAG___________AAGUU...CAA-5'\n_____________|_______________________________________|\n_____________169_____________________________________36\n |
55 -- 61 |
102 -- 108 |
-22.9941 kcal/mol |
2.75938 kcal/mol |
10.7301 kcal/mol |
37 185@LB@ | |@LB@5'-CAU...AAGUC AA AAACUCUCCCUUCAA UACUA...GCA-3'@LB@ UCC AGCAGGU AUUUUCUCAUU@LB@ ||| ||||:|| |:||||||||:@LB@ AGG UCGUUCA UGAAAGAGUAG@LB@3'-AUU...GUAAC CG AGGUAUAUUACAACAG AAGUU...CAA-5'@LB@ | |@LB@ 169 36@LB@@LB@@LB@Energy -13.04 kcal/mol@LB@Hybridization Energy -22.9941 kcal/mol@LB@Unfolding Energy - mRNA 2.75938 kcal/mol@LB@Unfolding Energy - sRNA 10.7301 kcal/mol@LB@@LB@Position - mRNA 38 -- 184@LB@Position - sRNA 37 -- 168@LB@Position Seed - mRNA 55 -- 61@LB@Position Seed - sRNA 102 -- 108@LB@ |
| 185 |
0.008526 |
0.1751 |
bsu02370 |
ybgA |
-10.25 |
0.283898 |
252 -- 276 |
59 -- 82 |
GntR family transcriptional regulator |
|
_____________251_________________________277\n_____________|___________________________|\n5'-GAU...UUAAA___G____AAU___A____________AGCUG...UUU-3'\n______________UCG__GCA___AUC__GGCGAAUGAUC\n______________|||__|||___|||__|||:||::|||\n______________AGC__CGU___UAG__CCGUUUGUUAG\n3'-AUU...ACCGA___AA_________AA___________CAUGG...CAA-5'\n_____________|___________________________|\n_____________83__________________________58\n |
266 -- 272 |
63 -- 69 |
-19.3785 kcal/mol |
3.33361 kcal/mol |
6.42004 kcal/mol |
251 277@LB@ | |@LB@5'-GAU...UUAAA G AAU A AGCUG...UUU-3'@LB@ UCG GCA AUC GGCGAAUGAUC@LB@ ||| ||| ||| |||:||::|||@LB@ AGC CGU UAG CCGUUUGUUAG@LB@3'-AUU...ACCGA AA AA CAUGG...CAA-5'@LB@ | |@LB@ 83 58@LB@@LB@@LB@Energy -10.25 kcal/mol@LB@Hybridization Energy -19.3785 kcal/mol@LB@Unfolding Energy - mRNA 3.33361 kcal/mol@LB@Unfolding Energy - sRNA 6.42004 kcal/mol@LB@@LB@Position - mRNA 252 -- 276@LB@Position - sRNA 59 -- 82@LB@Position Seed - mRNA 266 -- 272@LB@Position Seed - sRNA 63 -- 69@LB@ |
| 187 |
0.008608 |
0.1751 |
bsu17960 |
yneK |
-9.96 |
0.317804 |
143 -- 172 |
155 -- 184 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________142___________173\n_____________|_____________|\n5'-AGU...AAUCU________AU___AUAUG...UAA-3'\n______________CUCUUCGU__ACA\n______________||||||:|__|||\n______________GAGAAGUA__UGU\n3'-AUU...AAAAU________GU___CCUGU...CAA-5'\n_____________|_____________|\n_____________185___________154\n |
161 -- 167 |
160 -- 166 |
-12.096 kcal/mol |
1.39305 kcal/mol |
1.41024 kcal/mol |
142 173@LB@ | |@LB@5'-AGU...AAUCU AU AUAUG...UAA-3'@LB@ CUCUUCGU ACA@LB@ ||||||:| |||@LB@ GAGAAGUA UGU@LB@3'-AUU...AAAAU GU CCUGU...CAA-5'@LB@ | |@LB@ 185 154@LB@@LB@@LB@Energy -9.96 kcal/mol@LB@Hybridization Energy -12.096 kcal/mol@LB@Unfolding Energy - mRNA 1.39305 kcal/mol@LB@Unfolding Energy - sRNA 1.41024 kcal/mol@LB@@LB@Position - mRNA 143 -- 172@LB@Position - sRNA 155 -- 184@LB@Position Seed - mRNA 161 -- 167@LB@Position Seed - sRNA 160 -- 166@LB@ |
| 188 |
0.008618 |
0.1751 |
bsu31720 |
degQ |
-9.47 |
0.382925 |
276 -- 300 |
147 -- 170 |
degradation enzyme regulation protein DegQ |
|
_____________275______________301\n_____________|________________|\n5'-GAA...AUUCA____GAAA________AAAGC...UUG-3'\n______________UUAC____CAUUAACA\n______________||||____|||:||||\n______________AAUG____GUAGUUGU\n3'-AUU...AAAAA____AGAA________CCUGU...CAA-5'\n_____________|________________|\n_____________171______________146\n |
285 -- 291 |
155 -- 161 |
-9.46814 kcal/mol |
0.995164 kcal/mol |
1.41808 kcal/mol |
275 301@LB@ | |@LB@5'-GAA...AUUCA GAAA AAAGC...UUG-3'@LB@ UUAC CAUUAACA@LB@ |||| |||:||||@LB@ AAUG GUAGUUGU@LB@3'-AUU...AAAAA AGAA CCUGU...CAA-5'@LB@ | |@LB@ 171 146@LB@@LB@@LB@Energy -9.47 kcal/mol@LB@Hybridization Energy -9.46814 kcal/mol@LB@Unfolding Energy - mRNA 0.995164 kcal/mol@LB@Unfolding Energy - sRNA 1.41808 kcal/mol@LB@@LB@Position - mRNA 276 -- 300@LB@Position - sRNA 147 -- 170@LB@Position Seed - mRNA 285 -- 291@LB@Position Seed - sRNA 155 -- 161@LB@ |
| 189 |
0.008686 |
0.1751 |
bsu03110 |
ycgH |
-10.16 |
0.294825 |
102 -- 123 |
120 -- 141 |
transporter |
|
_____________101____________________124\n_____________|______________________|\n5'-UUU...UGAGC______UUCCUUC_________AAAGA...UCG-3'\n______________GUCUGC_______UCCAUGUAA\n______________|||:||_______|||||:|||\n______________CAGGCG_______AGGUAUAUU\n3'-AUU...UGUAA______UCGUUCA_________ACAAC...CAA-5'\n_____________|______________________|\n_____________142____________________119\n |
117 -- 123 |
120 -- 126 |
-19.5867 kcal/mol |
5.23504 kcal/mol |
6.76593 kcal/mol |
101 124@LB@ | |@LB@5'-UUU...UGAGC UUCCUUC AAAGA...UCG-3'@LB@ GUCUGC UCCAUGUAA@LB@ |||:|| |||||:|||@LB@ CAGGCG AGGUAUAUU@LB@3'-AUU...UGUAA UCGUUCA ACAAC...CAA-5'@LB@ | |@LB@ 142 119@LB@@LB@@LB@Energy -10.16 kcal/mol@LB@Hybridization Energy -19.5867 kcal/mol@LB@Unfolding Energy - mRNA 5.23504 kcal/mol@LB@Unfolding Energy - sRNA 6.76593 kcal/mol@LB@@LB@Position - mRNA 102 -- 123@LB@Position - sRNA 120 -- 141@LB@Position Seed - mRNA 117 -- 123@LB@Position Seed - sRNA 120 -- 126@LB@ |
| 190 |
0.008698 |
0.1751 |
bsu19130 |
yocA |
-15.61 |
0.024807 |
4 -- 94 |
40 -- 127 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; Product type h: extrachromosomal origin' |
|
_____________3___________________________________________________________________________________________________95\n_____________|___________________________________________________________________________________________________|\n________5'-CAG_______UA_______C_______UA_____U___UUUAUCUUAUAACAAA__________AGU______CA_________________A_________AAUCU...ACC-3'\n______________UCAUAUG______UCA_CUUUCUU___UUCA_AGU________________UGCG__CUUG___GCAAAC______GCCUG___CUUGU_UUCCAUUUC\n______________:|||||:______|||_||||||:___||||_|||________________|||:__||||___||||||______:||::___|||:|_::|||||||\n______________GGUAUAU______AGU_GAAAGAG___AAGU_UCA________________ACGU__GAAC___CGUUUG______UGGGU___GAAUA_GGGGUAAAG\n3'-AUU...UUCAA_______UACAAC___________UAG____U___UUACUUACCGAAGCA_____UA_____________UUAGCA_____AGA_____A_________AAACU...CAA-5'\n_____________|___________________________________________________________________________________________________|\n_____________128_________________________________________________________________________________________________39\n |
82 -- 88 |
34 -- 40 |
-43.0073 kcal/mol |
9.62595 kcal/mol |
23.221 kcal/mol |
3 95@LB@ | |@LB@ 5'-CAG UA C UA U UUUAUCUUAUAACAAA AGU CA A AAUCU...ACC-3'@LB@ UCAUAUG UCA CUUUCUU UUCA AGU UGCG CUUG GCAAAC GCCUG CUUGU UUCCAUUUC@LB@ :|||||: ||| ||||||: |||| ||| |||: |||| |||||| :||:: |||:| ::|||||||@LB@ GGUAUAU AGU GAAAGAG AAGU UCA ACGU GAAC CGUUUG UGGGU GAAUA GGGGUAAAG@LB@3'-AUU...UUCAA UACAAC UAG U UUACUUACCGAAGCA UA UUAGCA AGA A AAACU...CAA-5'@LB@ | |@LB@ 128 39@LB@@LB@@LB@Energy -15.61 kcal/mol@LB@Hybridization Energy -43.0073 kcal/mol@LB@Unfolding Energy - mRNA 9.62595 kcal/mol@LB@Unfolding Energy - sRNA 23.221 kcal/mol@LB@@LB@Position - mRNA 4 -- 94@LB@Position - sRNA 40 -- 127@LB@Position Seed - mRNA 82 -- 88@LB@Position Seed - sRNA 34 -- 40@LB@ |
