15 |
0.0004798 |
0.1011 |
bsu04380 |
ydaT |
-18.00 |
0.007663 |
13 -- 34 |
33 -- 57 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________12________________________35\n_____________|_________________________|\n5'-AAC...CUUUU____G____________________CUAUC...AAG-3'\n______________UGCU_AUCUU___UUUCCCAUUUCU\n______________|:|:_||||:___||:|||||||||\n______________AUGG_UAGAG___AAGGGGUAAAGA\n3'-AUU...UUAGC____G_____AAU____________AACUU...CAA-5'\n_____________|_________________________|\n_____________58________________________32\n |
28 -- 34 |
33 -- 39 |
-24.9146 kcal/mol |
0.801206 kcal/mol |
9.08864 kcal/mol |
12 35@LB@ | |@LB@5'-AAC...CUUUU G CUAUC...AAG-3'@LB@ UGCU AUCUU UUUCCCAUUUCU@LB@ |:|: ||||: ||:|||||||||@LB@ AUGG UAGAG AAGGGGUAAAGA@LB@3'-AUU...UUAGC G AAU AACUU...CAA-5'@LB@ | |@LB@ 58 32@LB@@LB@@LB@Energy -18.00 kcal/mol@LB@Hybridization Energy -24.9146 kcal/mol@LB@Unfolding Energy - mRNA 0.801206 kcal/mol@LB@Unfolding Energy - sRNA 9.08864 kcal/mol@LB@@LB@Position - mRNA 13 -- 34@LB@Position - sRNA 33 -- 57@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 33 -- 39@LB@ |
16 |
0.0004911 |
0.1011 |
bsu34650 |
yvdC |
-21.31 |
0.001462 |
17 -- 94 |
101 -- 185 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; Product type pe: enzyme' |
|
_____________16_______________________________________________________________________95\n_____________|________________________________________________________________________|\n5'-AUA...UUUUA___G_______UCCCC_____U______C_________AAUACA____A________U____C__G______CCGCA...AGG-3'\n______________UAC_CUUCAUU_____CAGGG__UUGAU_____CCGCA________CA_AUG__GUU_UCAU_UU_UCAUCU\n______________|||_||||||:_____||||:__||||:_____|||||________||_||:__|||_|||:_||_||||||\n______________AUG_GAAGUAG_____GUCCU__AACUG_____GGCGU________GU_UAU__CAA_AGUG_AA_AGUAGA\n3'-AUU...AAAAA___A_______UU________GU_____UAACA_____CGUUCAAG__A___UA___C____A__G______AGUUU...CAA-5'\n_____________|________________________________________________________________________|\n_____________186______________________________________________________________________100\n |
36 -- 42 |
159 -- 165 |
-36.2616 kcal/mol |
8.0324 kcal/mol |
15.7762 kcal/mol |
16 95@LB@ | |@LB@5'-AUA...UUUUA G UCCCC U C AAUACA A U C G CCGCA...AGG-3'@LB@ UAC CUUCAUU CAGGG UUGAU CCGCA CA AUG GUU UCAU UU UCAUCU@LB@ ||| ||||||: ||||: ||||: ||||| || ||: ||| |||: || ||||||@LB@ AUG GAAGUAG GUCCU AACUG GGCGU GU UAU CAA AGUG AA AGUAGA@LB@3'-AUU...AAAAA A UU GU UAACA CGUUCAAG A UA C A G AGUUU...CAA-5'@LB@ | |@LB@ 186 100@LB@@LB@@LB@Energy -21.31 kcal/mol@LB@Hybridization Energy -36.2616 kcal/mol@LB@Unfolding Energy - mRNA 8.0324 kcal/mol@LB@Unfolding Energy - sRNA 15.7762 kcal/mol@LB@@LB@Position - mRNA 17 -- 94@LB@Position - sRNA 101 -- 185@LB@Position Seed - mRNA 36 -- 42@LB@Position Seed - sRNA 159 -- 165@LB@ |
17 |
0.0005293 |
0.1011 |
bsu19390 |
yojN |
-14.35 |
0.045317 |
34 -- 87 |
125 -- 170 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; PubMedId: 15491156; Product type pe : enzyme' |
|
_____________33_______________________________________________________88\n_____________|________________________________________________________|\n5'-AAC...UGCAU_____A_____G____AGC_____AUUAUC_____AAC___AA_____________GUGCG...CUA-3'\n______________UUAUU_UUCAU_AACA___GGACG______UGACA____CC__GCGGCAA_UUCCG\n______________|||:|_|||||_||||___||||:______|||||____||__||:||||_||||:\n______________AAUGA_AAGUA_UUGU___CCUGU______ACUGU____GG__CGUCGUU_AAGGU\n3'-AUU...AAAAA_____G_____G____________A__________AACA___________C_____AUAUU...CAA-5'\n_____________|________________________________________________________|\n_____________171______________________________________________________124\n |
76 -- 82 |
131 -- 137 |
-33.3587 kcal/mol |
7.78061 kcal/mol |
10.3745 kcal/mol |
33 88@LB@ | |@LB@5'-AAC...UGCAU A G AGC AUUAUC AAC AA GUGCG...CUA-3'@LB@ UUAUU UUCAU AACA GGACG UGACA CC GCGGCAA UUCCG@LB@ |||:| ||||| |||| ||||: ||||| || ||:|||| ||||:@LB@ AAUGA AAGUA UUGU CCUGU ACUGU GG CGUCGUU AAGGU@LB@3'-AUU...AAAAA G G A AACA C AUAUU...CAA-5'@LB@ | |@LB@ 171 124@LB@@LB@@LB@Energy -14.35 kcal/mol@LB@Hybridization Energy -33.3587 kcal/mol@LB@Unfolding Energy - mRNA 7.78061 kcal/mol@LB@Unfolding Energy - sRNA 10.3745 kcal/mol@LB@@LB@Position - mRNA 34 -- 87@LB@Position - sRNA 125 -- 170@LB@Position Seed - mRNA 76 -- 82@LB@Position Seed - sRNA 131 -- 137@LB@ |
18 |
0.0005418 |
0.1011 |
bsu07080 |
yesZ |
-22.48 |
0.000806 |
260 -- 300 |
118 -- 160 |
beta-galactosidase YesZ |
|
_____________259_______________301\n_____________|_________________|\n5'-GAU...ACGAU_________________UCAUG...AUG-3'\n______________UCAGCAGGACAUUGACA\n______________|||:|||||||||||||\n______________AGUUGUCCUGUAACUGU\n3'-AUU...GAAGU_________________AACAG...CAA-5'\n_____________|_________________|\n_____________161_______________117\n |
270 -- 276 |
144 -- 150 |
-28.5551 kcal/mol |
3.65993 kcal/mol |
6.86594 kcal/mol |
259 301@LB@ | |@LB@5'-GAU...ACGAU UCAUG...AUG-3'@LB@ UCAGCAGGACAUUGACA@LB@ |||:|||||||||||||@LB@ AGUUGUCCUGUAACUGU@LB@3'-AUU...GAAGU AACAG...CAA-5'@LB@ | |@LB@ 161 117@LB@@LB@@LB@Energy -22.48 kcal/mol@LB@Hybridization Energy -28.5551 kcal/mol@LB@Unfolding Energy - mRNA 3.65993 kcal/mol@LB@Unfolding Energy - sRNA 6.86594 kcal/mol@LB@@LB@Position - mRNA 260 -- 300@LB@Position - sRNA 118 -- 160@LB@Position Seed - mRNA 270 -- 276@LB@Position Seed - sRNA 144 -- 150@LB@ |
20 |
0.0005654 |
0.1011 |
bsu03960 |
ycnK |
-22.14 |
0.000955 |
26 -- 173 |
12 -- 134 |
DeoR family transcriptional regulator |
|
_____________25________________________________________________________________________________________________________________________________________________________174\n_____________|_________________________________________________________________________________________________________________________________________________________|\n5'-AGG...GUUUC_______GGGUAUUCC_________AUUC_____GUCUAUUAUAC______CCCUUC__UU_C__________U__________C___UUUUCACAUUUUUU__________C__A____________C___A______CCUCU_________AUAGA...AAA-3'\n______________UUUCAUA_________UCACUUUCU____CAUCU___________CAGAGU______UG__U_GUUUUGUUGC_GUU____CAA_ACA______________AUC__AUCCA_UU_CUUG_UCUCCGU_UCU___AAAU______ACGCUUAA\n______________||:||||_________|||||||||____|||||___________||:|||______||__|_|:||:|||||_:|:____|||_|||______________|||__|:|||_:|_|||:_||:||:|_|||___||||______||||||||\n______________AAGGUAU_________AGUGAAAGA____GUAGA___________GUUUCA______AC__A_CGAAGCAACG_UAG____GUU_UGU______________UAG__UGGGU_GA_GAAU_AGGGGUA_AGA___UUUA______UGCGAAUU\n3'-AUU...CGUUC_______AUUACAAC___________________A________________UU______UU_C__________U___AACC________________________CA_____A_______A_______A___AAC____AACUUU________AAAGA...CAA-5'\n_____________|_________________________________________________________________________________________________________________________________________________________|\n_____________135_______________________________________________________________________________________________________________________________________________________11\n |
167 -- 173 |
12 -- 18 |
-57.1101 kcal/mol |
10.5528 kcal/mol |
25.6552 kcal/mol |
25 174@LB@ | |@LB@5'-AGG...GUUUC GGGUAUUCC AUUC GUCUAUUAUAC CCCUUC UU C U C UUUUCACAUUUUUU C A C A CCUCU AUAGA...AAA-3'@LB@ UUUCAUA UCACUUUCU CAUCU CAGAGU UG U GUUUUGUUGC GUU CAA ACA AUC AUCCA UU CUUG UCUCCGU UCU AAAU ACGCUUAA@LB@ ||:|||| ||||||||| ||||| ||:||| || | |:||:||||| :|: ||| ||| ||| |:||| :| |||: ||:||:| ||| |||| ||||||||@LB@ AAGGUAU AGUGAAAGA GUAGA GUUUCA AC A CGAAGCAACG UAG GUU UGU UAG UGGGU GA GAAU AGGGGUA AGA UUUA UGCGAAUU@LB@3'-AUU...CGUUC AUUACAAC A UU UU C U AACC CA A A A AAC AACUUU AAAGA...CAA-5'@LB@ | |@LB@ 135 11@LB@@LB@@LB@Energy -22.14 kcal/mol@LB@Hybridization Energy -57.1101 kcal/mol@LB@Unfolding Energy - mRNA 10.5528 kcal/mol@LB@Unfolding Energy - sRNA 25.6552 kcal/mol@LB@@LB@Position - mRNA 26 -- 173@LB@Position - sRNA 12 -- 134@LB@Position Seed - mRNA 167 -- 173@LB@Position Seed - sRNA 12 -- 18@LB@ |
21 |
0.0005858 |
0.1011 |
bsu27120 |
sigV |
-13.38 |
0.071859 |
12 -- 26 |
38 -- 54 |
RNA polymerase sigma factor SigV |
|
______________12__________________________27\n______________|___________________________|\n___________5'-______GUUUG_________________AAAAC...AAG-3'\n______________AAUAAU_____UCAUCUCUUA__CCCCA\n______________||:|||_____:|||||||||__|||||\n______________UUGUUA_____GGUAGAGAAU__GGGGU\n3'-AUU...ACCGU______GCAUG__________AA_____AAAGA...CAA-5'\n_____________|____________________________|\n_____________55___________________________37\n |
15 -- 21 |
45 -- 51 |
-23.0819 kcal/mol |
1.75763 kcal/mol |
10.671 kcal/mol |
12 27@LB@ | |@LB@ 5'- GUUUG AAAAC...AAG-3'@LB@ AAUAAU UCAUCUCUUA CCCCA@LB@ ||:||| :||||||||| |||||@LB@ UUGUUA GGUAGAGAAU GGGGU@LB@3'-AUU...ACCGU GCAUG AA AAAGA...CAA-5'@LB@ | |@LB@ 55 37@LB@@LB@@LB@Energy -13.38 kcal/mol@LB@Hybridization Energy -23.0819 kcal/mol@LB@Unfolding Energy - mRNA 1.75763 kcal/mol@LB@Unfolding Energy - sRNA 10.671 kcal/mol@LB@@LB@Position - mRNA 12 -- 26@LB@Position - sRNA 38 -- 54@LB@Position Seed - mRNA 15 -- 21@LB@Position Seed - sRNA 45 -- 51@LB@ |
22 |
0.0005922 |
0.1011 |
bsu09965 |
yhaJ |
-9.39 |
0.394896 |
264 -- 275 |
174 -- 185 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; PubMedId: 16845009; Product type pf : factor' |
|
_____________263___________276\n_____________|_____________|\n5'-ACU...AACCC___AU________UUGUU...CCU-3'\n______________CAU__UUCGCAGU\n______________|||__|:|||||:\n______________GUA__AGGCGUCG\n3'-AUU...UAACU___AC________UUCAA...CAA-5'\n_____________|_____________|\n_____________186___________173\n |
68 -- 74 |
133 -- 139 |
-12.4018 kcal/mol |
1.72698 kcal/mol |
5.12932 kcal/mol |
263 276@LB@ | |@LB@5'-ACU...AACCC AU UUGUU...CCU-3'@LB@ CAU UUCGCAGU@LB@ ||| |:|||||:@LB@ GUA AGGCGUCG@LB@3'-AUU...UAACU AC UUCAA...CAA-5'@LB@ | |@LB@ 186 173@LB@@LB@@LB@Energy -9.39 kcal/mol@LB@Hybridization Energy -12.4018 kcal/mol@LB@Unfolding Energy - mRNA 1.72698 kcal/mol@LB@Unfolding Energy - sRNA 5.12932 kcal/mol@LB@@LB@Position - mRNA 264 -- 275@LB@Position - sRNA 174 -- 185@LB@Position Seed - mRNA 68 -- 74@LB@Position Seed - sRNA 133 -- 139@LB@ |
23 |
0.0006135 |
0.1011 |
bsu23610 |
nudF |
-13.21 |
0.077687 |
6 -- 79 |
37 -- 88 |
adp-ribose pyrophosphatase |
|
_____________5__________________________________________________________________________80\n_____________|__________________________________________________________________________|\n______5'-CUUUU_________AGAUC_______UCA__UAUUG__A_____GU____A_____UUAACUUCGCUCGA_________GCUUU...AAG-3'\n______________AUGGCUUUG_____CAAUCUU___CA_____AA_UGUGC__CCAU_CUCUU______________AUUUCCCAU\n______________|||||||:|_____|||||||___||_____||_:||:|__||||_|||||______________|||:|||||\n______________UACCGAAGC_____GUUAGAA___GU_____UU_GCAUG__GGUA_GAGAA______________UAAGGGGUA\n3'-AUU...UUACU_________AAC_________CC___UUG____A________________________________________AAGAA...CAA-5'\n_____________|__________________________________________________________________________|\n_____________89_________________________________________________________________________36\n |
73 -- 79 |
37 -- 43 |
-36.6547 kcal/mol |
11.779 kcal/mol |
14.1528 kcal/mol |
5 80@LB@ | |@LB@ 5'-CUUUU AGAUC UCA UAUUG A GU A UUAACUUCGCUCGA GCUUU...AAG-3'@LB@ AUGGCUUUG CAAUCUU CA AA UGUGC CCAU CUCUU AUUUCCCAU@LB@ |||||||:| ||||||| || || :||:| |||| ||||| |||:|||||@LB@ UACCGAAGC GUUAGAA GU UU GCAUG GGUA GAGAA UAAGGGGUA@LB@3'-AUU...UUACU AAC CC UUG A AAGAA...CAA-5'@LB@ | |@LB@ 89 36@LB@@LB@@LB@Energy -13.21 kcal/mol@LB@Hybridization Energy -36.6547 kcal/mol@LB@Unfolding Energy - mRNA 11.779 kcal/mol@LB@Unfolding Energy - sRNA 14.1528 kcal/mol@LB@@LB@Position - mRNA 6 -- 79@LB@Position - sRNA 37 -- 88@LB@Position Seed - mRNA 73 -- 79@LB@Position Seed - sRNA 37 -- 43@LB@ |
24 |
0.0006259 |
0.1011 |
bsu03380 |
yckB |
-16.82 |
0.013754 |
20 -- 129 |
16 -- 148 |
ABC transporter substrate-binding protein |
|
_____________19_________________________________________________________________________________________________________________________________________________130\n_____________|__________________________________________________________________________________________________________________________________________________|\n5'-UGC...UCCUU__U____C_______CA___U___A________UUUUUUCA_______C_____CC_____U__AC_______________________________CCC________G_____UGUAUA_A__A___GAACUU____________GAUCA...CCA-3'\n______________GG_ACGU_UGGCAUU__UCC_UGG_CAA_UUCC___________UCAC__UCUU__CUUCA_AG_________GCUUU_____________UAAACA_____ACCCAU_CUUUU______C_CA_UUC_______UUUGAAAACGC\n______________||_||:|_||:||||__|||_::|_|||_||||___________||||__|||:__|||||_||_________||||:_____________:|||||_____||||||_||:||______|_||_|||_______|||||||||||\n______________CC_UGUA_ACUGUAA__AGG_GUC_GUU_AAGG___________AGUG__AGAG__GAAGU_UC_________CGAAG_____________GUUUGU_____UGGGUA_GAGAA______G_GU_AAG_______AAACUUUUGCG\n3'-AUU...GUUGU_______________C____C_______C____UAUAUUACAAC____AA____UA_____U__AUUACUUAC_____CAACGUUAGAACC______UAGCA____________UAAGG_____A___AAACUUU___________AAUUA...CAA-5'\n_____________|__________________________________________________________________________________________________________________________________________________|\n_____________149________________________________________________________________________________________________________________________________________________15\n |
123 -- 129 |
16 -- 22 |
-61.2162 kcal/mol |
13.3554 kcal/mol |
33.3199 kcal/mol |
19 130@LB@ | |@LB@5'-UGC...UCCUU U C CA U A UUUUUUCA C CC U AC CCC G UGUAUA A A GAACUU GAUCA...CCA-3'@LB@ GG ACGU UGGCAUU UCC UGG CAA UUCC UCAC UCUU CUUCA AG GCUUU UAAACA ACCCAU CUUUU C CA UUC UUUGAAAACGC@LB@ || ||:| ||:|||| ||| ::| ||| |||| |||| |||: ||||| || ||||: :||||| |||||| ||:|| | || ||| |||||||||||@LB@ CC UGUA ACUGUAA AGG GUC GUU AAGG AGUG AGAG GAAGU UC CGAAG GUUUGU UGGGUA GAGAA G GU AAG AAACUUUUGCG@LB@3'-AUU...GUUGU C C C UAUAUUACAAC AA UA U AUUACUUAC CAACGUUAGAACC UAGCA UAAGG A AAACUUU AAUUA...CAA-5'@LB@ | |@LB@ 149 15@LB@@LB@@LB@Energy -16.82 kcal/mol@LB@Hybridization Energy -61.2162 kcal/mol@LB@Unfolding Energy - mRNA 13.3554 kcal/mol@LB@Unfolding Energy - sRNA 33.3199 kcal/mol@LB@@LB@Position - mRNA 20 -- 129@LB@Position - sRNA 16 -- 148@LB@Position Seed - mRNA 123 -- 129@LB@Position Seed - sRNA 16 -- 22@LB@ |
25 |
0.0006626 |
0.1027 |
bsu07955 |
yfkA |
-14.87 |
0.035327 |
3 -- 70 |
36 -- 108 |
radical SAM protein YfkA |
|
_____________2______________71\n_____________|______________|\n5'-AGU...GCUAC______________AAUCA...ACG-3'\n______________UUGCGAUCUUGGCA\n______________||||:|||||||||\n______________AACGUUAGAACCGU\n3'-AUU...GAAGC______________UUGUU...CAA-5'\n_____________|______________|\n_____________109____________35\n |
130 -- 136 |
66 -- 72 |
-22.3996 kcal/mol |
5.8798 kcal/mol |
4.6863 kcal/mol |
2 71@LB@ | |@LB@5'-AGU...GCUAC AAUCA...ACG-3'@LB@ UUGCGAUCUUGGCA@LB@ ||||:|||||||||@LB@ AACGUUAGAACCGU@LB@3'-AUU...GAAGC UUGUU...CAA-5'@LB@ | |@LB@ 109 35@LB@@LB@@LB@Energy -14.87 kcal/mol@LB@Hybridization Energy -22.3996 kcal/mol@LB@Unfolding Energy - mRNA 5.8798 kcal/mol@LB@Unfolding Energy - sRNA 4.6863 kcal/mol@LB@@LB@Position - mRNA 3 -- 70@LB@Position - sRNA 36 -- 108@LB@Position Seed - mRNA 130 -- 136@LB@Position Seed - sRNA 66 -- 72@LB@ |