| 2 |
6.323e-05 |
0.08823 |
bsu13370 |
ykoQ |
-21.23 |
0.001523 |
8 -- 146 |
40 -- 170 |
metallophosphoesterase |
|
_____________7_______________________________________________________________________________________________________________________________________________________147\n_____________|_______________________________________________________________________________________________________________________________________________________|\n____5'-CGUAACA______ACA____C__UUGU___UC____________U_____U_____GCCUC_________AAA_______A__CCUUUUCC__________CAAAU__U__AUCAUAU______C___UUUUCA__________ACCCAUUA______GCUAU...CAA-3'\n______________UUGCUU___CAUC_AU____UAU__UGAC____UCCG_CGGCA_GUUCU_____AUG_UGUCA____UUUAUU_UC______________CUUC_____CA_UC_______GACAAU_CGU______ACCUGUCUCU________AUUCCC\n______________||:||:___||||_|:____:||__||||____||||_|:|||_||||:_____|||_|||||____:|:||:_||______________||||_____||_||_______:|||||_|||______|||::|||||________||||||\n______________AAUGAG___GUAG_UG____GUA__ACUG____AGGC_GUCGU_CAAGG_____UAC_ACAGU____GAGUAG_AG______________GAAG_____GU_AG_______UUGUUA_GCA______UGGGUAGAGA________UAAGGG\n3'-AUU...AAAAA______AA_____U__UCCU_________UAAC__________U_____UAUAU___A_____GAAA______A__UUUCAUUACUUACC____CAAC___U__AACCGU___________________________A_____________GUAAA...CAA-5'\n_____________|_______________________________________________________________________________________________________________________________________________________|\n_____________171_____________________________________________________________________________________________________________________________________________________39\n |
126 -- 132 |
47 -- 53 |
-61.8379 kcal/mol |
13.5948 kcal/mol |
30.7766 kcal/mol |
7 147@LB@ | |@LB@ 5'-CGUAACA ACA C UUGU UC U U GCCUC AAA A CCUUUUCC CAAAU U AUCAUAU C UUUUCA ACCCAUUA GCUAU...CAA-3'@LB@ UUGCUU CAUC AU UAU UGAC UCCG CGGCA GUUCU AUG UGUCA UUUAUU UC CUUC CA UC GACAAU CGU ACCUGUCUCU AUUCCC@LB@ ||:||: |||| |: :|| |||| |||| |:||| ||||: ||| ||||| :|:||: || |||| || || :||||| ||| |||::||||| ||||||@LB@ AAUGAG GUAG UG GUA ACUG AGGC GUCGU CAAGG UAC ACAGU GAGUAG AG GAAG GU AG UUGUUA GCA UGGGUAGAGA UAAGGG@LB@3'-AUU...AAAAA AA U UCCU UAAC U UAUAU A GAAA A UUUCAUUACUUACC CAAC U AACCGU A GUAAA...CAA-5'@LB@ | |@LB@ 171 39@LB@@LB@@LB@Energy -21.23 kcal/mol@LB@Hybridization Energy -61.8379 kcal/mol@LB@Unfolding Energy - mRNA 13.5948 kcal/mol@LB@Unfolding Energy - sRNA 30.7766 kcal/mol@LB@@LB@Position - mRNA 8 -- 146@LB@Position - sRNA 40 -- 170@LB@Position Seed - mRNA 126 -- 132@LB@Position Seed - sRNA 47 -- 53@LB@ |
| 90 |
0.003471 |
0.1486 |
bsu35950 |
rbsC |
-15.06 |
0.032267 |
242 -- 293 |
40 -- 84 |
ribose transport system permease RbsC |
|
_____________241______________________________________294\n_____________|________________________________________|\n5'-CAA...AUUCA_____AC_G____AU______AAC________________GUUUA...UCA-3'\n______________CUUCG__G_AGUC___GCAAA___UCG_GCCCGUUUCUUG\n______________|||||__|_|:||___|||||___|||_:|||:|:||||:\n______________GAAGC__C_UUAG___CGUUU___AGC_UGGGUAGAGAAU\n3'-AUU...UUACC_____AA_G____AAC_____GUU___A____________AAGGG...CAA-5'\n_____________|________________________________________|\n_____________85_______________________________________39\n |
273 -- 279 |
45 -- 51 |
-33.8346 kcal/mol |
9.61657 kcal/mol |
8.57091 kcal/mol |
241 294@LB@ | |@LB@5'-CAA...AUUCA AC G AU AAC GUUUA...UCA-3'@LB@ CUUCG G AGUC GCAAA UCG GCCCGUUUCUUG@LB@ ||||| | |:|| ||||| ||| :|||:|:||||:@LB@ GAAGC C UUAG CGUUU AGC UGGGUAGAGAAU@LB@3'-AUU...UUACC AA G AAC GUU A AAGGG...CAA-5'@LB@ | |@LB@ 85 39@LB@@LB@@LB@Energy -15.06 kcal/mol@LB@Hybridization Energy -33.8346 kcal/mol@LB@Unfolding Energy - mRNA 9.61657 kcal/mol@LB@Unfolding Energy - sRNA 8.57091 kcal/mol@LB@@LB@Position - mRNA 242 -- 293@LB@Position - sRNA 40 -- 84@LB@Position Seed - mRNA 273 -- 279@LB@Position Seed - sRNA 45 -- 51@LB@ |
| 124 |
0.005654 |
0.1741 |
bsu24680 |
comGF |
-17.71 |
0.008856 |
105 -- 249 |
40 -- 187 |
ComG operon protein 6 |
|
_____________104_____________________________________250\n_____________|_______________________________________|\n5'-UGU...UUUUG______A_______A_________GUU__A_A_______AAUGG...UAG-3'\n______________UC_UCG_CAGCAGG_ACA_UGACG___UC_C_CAGCAGG\n______________||_||:_||:||||_|||_||||:___||_|_|||||:|\n______________AG_AGU_GUUGUCC_UGU_ACUGU___AG_G_GUCGUUC\n3'-AUU...AAAUG__A___A___________A_____AAC____C_______AAGGU...CAA-5'\n_____________|_______________________________________|\n_____________188_____________________________________39\n |
276 -- 282 |
130 -- 136 |
-32.8645 kcal/mol |
8.22307 kcal/mol |
10.1234 kcal/mol |
104 250@LB@ | |@LB@5'-UGU...UUUUG A A GUU A A AAUGG...UAG-3'@LB@ UC UCG CAGCAGG ACA UGACG UC C CAGCAGG@LB@ || ||: ||:|||| ||| ||||: || | |||||:|@LB@ AG AGU GUUGUCC UGU ACUGU AG G GUCGUUC@LB@3'-AUU...AAAUG A A A AAC C AAGGU...CAA-5'@LB@ | |@LB@ 188 39@LB@@LB@@LB@Energy -17.71 kcal/mol@LB@Hybridization Energy -32.8645 kcal/mol@LB@Unfolding Energy - mRNA 8.22307 kcal/mol@LB@Unfolding Energy - sRNA 10.1234 kcal/mol@LB@@LB@Position - mRNA 105 -- 249@LB@Position - sRNA 40 -- 187@LB@Position Seed - mRNA 276 -- 282@LB@Position Seed - sRNA 130 -- 136@LB@ |
| 190 |
0.008698 |
0.1751 |
bsu19130 |
yocA |
-15.61 |
0.024807 |
4 -- 94 |
40 -- 127 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; Product type h: extrachromosomal origin' |
|
_____________3___________________________________________________________________________________________________95\n_____________|___________________________________________________________________________________________________|\n________5'-CAG_______UA_______C_______UA_____U___UUUAUCUUAUAACAAA__________AGU______CA_________________A_________AAUCU...ACC-3'\n______________UCAUAUG______UCA_CUUUCUU___UUCA_AGU________________UGCG__CUUG___GCAAAC______GCCUG___CUUGU_UUCCAUUUC\n______________:|||||:______|||_||||||:___||||_|||________________|||:__||||___||||||______:||::___|||:|_::|||||||\n______________GGUAUAU______AGU_GAAAGAG___AAGU_UCA________________ACGU__GAAC___CGUUUG______UGGGU___GAAUA_GGGGUAAAG\n3'-AUU...UUCAA_______UACAAC___________UAG____U___UUACUUACCGAAGCA_____UA_____________UUAGCA_____AGA_____A_________AAACU...CAA-5'\n_____________|___________________________________________________________________________________________________|\n_____________128_________________________________________________________________________________________________39\n |
82 -- 88 |
34 -- 40 |
-43.0073 kcal/mol |
9.62595 kcal/mol |
23.221 kcal/mol |
3 95@LB@ | |@LB@ 5'-CAG UA C UA U UUUAUCUUAUAACAAA AGU CA A AAUCU...ACC-3'@LB@ UCAUAUG UCA CUUUCUU UUCA AGU UGCG CUUG GCAAAC GCCUG CUUGU UUCCAUUUC@LB@ :|||||: ||| ||||||: |||| ||| |||: |||| |||||| :||:: |||:| ::|||||||@LB@ GGUAUAU AGU GAAAGAG AAGU UCA ACGU GAAC CGUUUG UGGGU GAAUA GGGGUAAAG@LB@3'-AUU...UUCAA UACAAC UAG U UUACUUACCGAAGCA UA UUAGCA AGA A AAACU...CAA-5'@LB@ | |@LB@ 128 39@LB@@LB@@LB@Energy -15.61 kcal/mol@LB@Hybridization Energy -43.0073 kcal/mol@LB@Unfolding Energy - mRNA 9.62595 kcal/mol@LB@Unfolding Energy - sRNA 23.221 kcal/mol@LB@@LB@Position - mRNA 4 -- 94@LB@Position - sRNA 40 -- 127@LB@Position Seed - mRNA 82 -- 88@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 28 |
0.0008121 |
0.1059 |
bsu37450 |
ywhK |
-15.95 |
0.020994 |
89 -- 155 |
41 -- 105 |
Evidence 1a: Function experimentally demonstrated in the studied strain; PubMedId: 12073041; Product type f: factor |
bsu37440 |
_____________88_______________________________________156\n_____________|________________________________________|\n5'-UAU...CCUCA_______GUA_______ACA__U_____U____A______GUUAU...UUC-3'\n______________GCAAUUU___CAAGCAA___CG_UACCC_UC_C_UAUUCU\n______________|||||:|___|||:|||___||_|||||_||_|_|||||:\n______________CGUUAGA___GUUUGUU___GC_AUGGG_AG_G_AUAAGG\n3'-AUU...AGCAA_______ACC_______A__________U__A_A______GGUAA...CAA-5'\n_____________|________________________________________|\n_____________106______________________________________40\n |
127 -- 133 |
61 -- 67 |
-28.9674 kcal/mol |
4.84834 kcal/mol |
9.64723 kcal/mol |
88 156@LB@ | |@LB@5'-UAU...CCUCA GUA ACA U U A GUUAU...UUC-3'@LB@ GCAAUUU CAAGCAA CG UACCC UC C UAUUCU@LB@ |||||:| |||:||| || ||||| || | |||||:@LB@ CGUUAGA GUUUGUU GC AUGGG AG G AUAAGG@LB@3'-AUU...AGCAA ACC A U A A GGUAA...CAA-5'@LB@ | |@LB@ 106 40@LB@@LB@@LB@Energy -15.95 kcal/mol@LB@Hybridization Energy -28.9674 kcal/mol@LB@Unfolding Energy - mRNA 4.84834 kcal/mol@LB@Unfolding Energy - sRNA 9.64723 kcal/mol@LB@@LB@Position - mRNA 89 -- 155@LB@Position - sRNA 41 -- 105@LB@Position Seed - mRNA 127 -- 133@LB@Position Seed - sRNA 61 -- 67@LB@ |
| 79 |
0.002683 |
0.1316 |
bsu12250 |
yjkB |
-15.23 |
0.029777 |
154 -- 245 |
42 -- 131 |
ABC transporter ATP-binding protein |
|
_____________153__________________________________________________________246\n_____________|____________________________________________________________|\n5'-AUA...UGAAA___GA__A_______GGAA__________AAACACAAAACAUACC_G_______C_____AGAUC...AGG-3'\n______________GGU__UU_UUGUAAU____GCAAACGAUC________________A_CCAUCUC___UUC\n______________||:__|:_|||:|||____||||||:|||________________|_|||||||___|||\n______________CCG__AG_AACGUUA____CGUUUGUUAG________________U_GGUAGAG___AAG\n3'-AUU...ACUUA___A___C_______GAAC__________CA_______________G_______AAU___GGGUA...CAA-5'\n_____________|____________________________________________________________|\n_____________132__________________________________________________________41\n |
235 -- 241 |
48 -- 54 |
-30.736 kcal/mol |
10.3673 kcal/mol |
9.19615 kcal/mol |
153 246@LB@ | |@LB@5'-AUA...UGAAA GA A GGAA AAACACAAAACAUACC G C AGAUC...AGG-3'@LB@ GGU UU UUGUAAU GCAAACGAUC A CCAUCUC UUC@LB@ ||: |: |||:||| ||||||:||| | ||||||| |||@LB@ CCG AG AACGUUA CGUUUGUUAG U GGUAGAG AAG@LB@3'-AUU...ACUUA A C GAAC CA G AAU GGGUA...CAA-5'@LB@ | |@LB@ 132 41@LB@@LB@@LB@Energy -15.23 kcal/mol@LB@Hybridization Energy -30.736 kcal/mol@LB@Unfolding Energy - mRNA 10.3673 kcal/mol@LB@Unfolding Energy - sRNA 9.19615 kcal/mol@LB@@LB@Position - mRNA 154 -- 245@LB@Position - sRNA 42 -- 131@LB@Position Seed - mRNA 235 -- 241@LB@Position Seed - sRNA 48 -- 54@LB@ |
| 135 |
0.00631 |
0.1741 |
bsu31510 |
yufK |
-14.38 |
0.044651 |
233 -- 280 |
42 -- 85 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; PubMedId: 15849754 16850406; Product type pm: membrane component' |
|
_____________232________________________________________________281\n_____________|__________________________________________________|\n5'-UGC...UUUCC___GA_________CU___UUUU___U____CCUU_________AAC___ACUUU...UGC-3'\n______________GCU___UUGCGAUC___GC____UAG_UCGU____AUCCAUCUC___UUC\n______________|||___||||:|||___||____:|:_||||____|:|||||||___|||\n______________CGA___AACGUUAG___CG____GUU_AGCA____UGGGUAGAG___AAG\n3'-AUU...CUUAC___AGC________AAC__UUU______________________AAU___GGGUA...CAA-5'\n_____________|__________________________________________________|\n_____________86_________________________________________________41\n |
268 -- 274 |
48 -- 54 |
-29.5205 kcal/mol |
6.02241 kcal/mol |
9.1918 kcal/mol |
232 281@LB@ | |@LB@5'-UGC...UUUCC GA CU UUUU U CCUU AAC ACUUU...UGC-3'@LB@ GCU UUGCGAUC GC UAG UCGU AUCCAUCUC UUC@LB@ ||| ||||:||| || :|: |||| |:||||||| |||@LB@ CGA AACGUUAG CG GUU AGCA UGGGUAGAG AAG@LB@3'-AUU...CUUAC AGC AAC UUU AAU GGGUA...CAA-5'@LB@ | |@LB@ 86 41@LB@@LB@@LB@Energy -14.38 kcal/mol@LB@Hybridization Energy -29.5205 kcal/mol@LB@Unfolding Energy - mRNA 6.02241 kcal/mol@LB@Unfolding Energy - sRNA 9.1918 kcal/mol@LB@@LB@Position - mRNA 233 -- 280@LB@Position - sRNA 42 -- 85@LB@Position Seed - mRNA 268 -- 274@LB@Position Seed - sRNA 48 -- 54@LB@ |
| 155 |
0.00708 |
0.1751 |
bsu17280 |
ymaD |
-7.93 |
0.631070 |
192 -- 223 |
42 -- 69 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; PubMedId: 16267290; Product type pe : enzyme' |
|
_____________191______________________________224\n_____________|________________________________|\n5'-AAA...AAGGA___A_______G_CAGA_____AU________AAAAG...UUC-3'\n______________GGC_AAACAAU_G____UCAUC__UUUUAUUU\n______________|||_|||||||_|____:||||__|:|||||:\n______________CCG_UUUGUUA_C____GGUAG__AGAAUAAG\n3'-AUU...UAGAA___________G_AUG________________GGGUA...CAA-5'\n_____________|________________________________|\n_____________70_______________________________41\n |
217 -- 223 |
42 -- 48 |
-20.5024 kcal/mol |
4.54925 kcal/mol |
8.89481 kcal/mol |
191 224@LB@ | |@LB@5'-AAA...AAGGA A G CAGA AU AAAAG...UUC-3'@LB@ GGC AAACAAU G UCAUC UUUUAUUU@LB@ ||| ||||||| | :|||| |:|||||:@LB@ CCG UUUGUUA C GGUAG AGAAUAAG@LB@3'-AUU...UAGAA G AUG GGGUA...CAA-5'@LB@ | |@LB@ 70 41@LB@@LB@@LB@Energy -7.93 kcal/mol@LB@Hybridization Energy -20.5024 kcal/mol@LB@Unfolding Energy - mRNA 4.54925 kcal/mol@LB@Unfolding Energy - sRNA 8.89481 kcal/mol@LB@@LB@Position - mRNA 192 -- 223@LB@Position - sRNA 42 -- 69@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 160 |
0.007403 |
0.1751 |
bsu11139 |
yizC |
-17.39 |
0.010400 |
11 -- 81 |
42 -- 107 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________10____________________________________________________________________________82\n_____________|_____________________________________________________________________________|\n5'-UUG...GACGA_______CG________UG______GG____________CAAAAUG_________AGCAA_____GAAGG_______AGCAG...UGA-3'\n______________CUCAUCU__UCAAAGUA__GAA_GG_______GCAGUCU_______GGUAAACGA_____AUCCA_____UUUAUUC\n______________|||||||__||||||||__|||_||_______|||:|||_______||:||||:|_____|:|||_____:||||||\n______________GAGUAGA__AGUUUCAU__CUU_CC_______CGUUAGA_______CCGUUUGUU_____UGGGU_____GAAUAAG\n3'-AUU...UGAAA_________________UA___A__GAAGCAA_______A_______________AGCA______AGA_________GGGUA...CAA-5'\n_____________|_____________________________________________________________________________|\n_____________108___________________________________________________________________________41\n |
75 -- 81 |
42 -- 48 |
-46.4368 kcal/mol |
15.8344 kcal/mol |
18.2654 kcal/mol |
10 82@LB@ | |@LB@5'-UUG...GACGA CG UG GG CAAAAUG AGCAA GAAGG AGCAG...UGA-3'@LB@ CUCAUCU UCAAAGUA GAA GG GCAGUCU GGUAAACGA AUCCA UUUAUUC@LB@ ||||||| |||||||| ||| || |||:||| ||:||||:| |:||| :||||||@LB@ GAGUAGA AGUUUCAU CUU CC CGUUAGA CCGUUUGUU UGGGU GAAUAAG@LB@3'-AUU...UGAAA UA A GAAGCAA A AGCA AGA GGGUA...CAA-5'@LB@ | |@LB@ 108 41@LB@@LB@@LB@Energy -17.39 kcal/mol@LB@Hybridization Energy -46.4368 kcal/mol@LB@Unfolding Energy - mRNA 15.8344 kcal/mol@LB@Unfolding Energy - sRNA 18.2654 kcal/mol@LB@@LB@Position - mRNA 11 -- 81@LB@Position - sRNA 42 -- 107@LB@Position Seed - mRNA 75 -- 81@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 81 |
0.002798 |
0.1325 |
bsu03250 |
ycgR |
-7.37 |
0.727097 |
84 -- 130 |
48 -- 86 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; PubMedId: 15849754 16850406; Product type pt: transporter' |
|
_____________83_______________________________________________131\n_____________|________________________________________________|\n5'-GCG...UACUC__________G____CUAACCAAAGUG________CUUUC___UC___CGUCA...GAA-3'\n______________GGCUUU_UUG_AAUC____________AAACGAUC_____CCC__CUC\n______________|||||:_|||_||||____________||||:|||_____|||__|||\n______________CCGAAG_AAC_UUAG____________UUUGUUAG_____GGG__GAG\n3'-AUU...ACUUA______C___G____AACCG_______________CAU_____UA___AAUAA...CAA-5'\n_____________|________________________________________________|\n_____________87_______________________________________________47\n |
111 -- 117 |
59 -- 65 |
-26.5811 kcal/mol |
9.91993 kcal/mol |
9.18845 kcal/mol |
83 131@LB@ | |@LB@5'-GCG...UACUC G CUAACCAAAGUG CUUUC UC CGUCA...GAA-3'@LB@ GGCUUU UUG AAUC AAACGAUC CCC CUC@LB@ |||||: ||| |||| ||||:||| ||| |||@LB@ CCGAAG AAC UUAG UUUGUUAG GGG GAG@LB@3'-AUU...ACUUA C G AACCG CAU UA AAUAA...CAA-5'@LB@ | |@LB@ 87 47@LB@@LB@@LB@Energy -7.37 kcal/mol@LB@Hybridization Energy -26.5811 kcal/mol@LB@Unfolding Energy - mRNA 9.91993 kcal/mol@LB@Unfolding Energy - sRNA 9.18845 kcal/mol@LB@@LB@Position - mRNA 84 -- 130@LB@Position - sRNA 48 -- 86@LB@Position Seed - mRNA 111 -- 117@LB@Position Seed - sRNA 59 -- 65@LB@ |
