175 |
0.008121 |
0.1751 |
bsu19160 |
yocC |
-10.77 |
0.229075 |
5 -- 48 |
34 -- 79 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________4_________________________________________________49\n_____________|_________________________________________________|\n_______5'-UAAU___U_____AAUG___U________________CG_______CUU____ACAGG...UAU-3'\n______________UUG_UAAUC_____AA_CAAUCG___CCA_UUC__AUUCCUC___UUUC\n______________|||_:||||_____||_||||||___|||_:||__|||||:|___||||\n______________AAC_GUUAG_____UU_GUUAGC___GGU_GAG__UAAGGGG___AAAG\n3'-AUU...GAAGC_________AACCG__U______AUG___A___AA_______U______AAACU...CAA-5'\n_____________|_________________________________________________|\n_____________80________________________________________________33\n |
35 -- 41 |
39 -- 45 |
-25.1951 kcal/mol |
3.86331 kcal/mol |
13.8007 kcal/mol |
4 49@LB@ | |@LB@ 5'-UAAU U AAUG U CG CUU ACAGG...UAU-3'@LB@ UUG UAAUC AA CAAUCG CCA UUC AUUCCUC UUUC@LB@ ||| :|||| || |||||| ||| :|| |||||:| ||||@LB@ AAC GUUAG UU GUUAGC GGU GAG UAAGGGG AAAG@LB@3'-AUU...GAAGC AACCG U AUG A AA U AAACU...CAA-5'@LB@ | |@LB@ 80 33@LB@@LB@@LB@Energy -10.77 kcal/mol@LB@Hybridization Energy -25.1951 kcal/mol@LB@Unfolding Energy - mRNA 3.86331 kcal/mol@LB@Unfolding Energy - sRNA 13.8007 kcal/mol@LB@@LB@Position - mRNA 5 -- 48@LB@Position - sRNA 34 -- 79@LB@Position Seed - mRNA 35 -- 41@LB@Position Seed - sRNA 39 -- 45@LB@ |
177 |
0.008148 |
0.1751 |
bsu37320 |
narK |
-12.38 |
0.113512 |
147 -- 292 |
34 -- 178 |
nitrite extrusion protein |
|
_____________146________________________________________________________________________________________________________________________________________________________293\n_____________|__________________________________________________________________________________________________________________________________________________________|\n5'-CAA...UUGGC__G_______AU____A___UGAUU_____AU_____AAA_G___________A_____CAACC__CAA___A___AA_____G___C___CAUUAA______G__G___________UU______UGG_____G_________CA________CCAAAUCA-3'\n______________UA_UUUUUGU__GAUA_GAC_____AUUGA__CAUUG___G_GGCAAG__CCA_AUGAU_____GU___CAC_UUC__UUAUC_UUA_AGU________GCUU_GU_GCAG____GGU__AUGGUU___GUGCU_AUUUC__AU__CUCAUUUC\n______________||_|:||::|__:|:|_|||_____|||||__|||||___|_:|||||__|||_||:||_____||___|||_|||__|:|||_|:|_|||________||||_||_|||:____||:__|:::|:___||:|:_||:||__||__|:||||||\n______________AU_AGAAGUA__UUGU_CUG_____UAACU__GUAAC___C_UCGUUC__GGU_UAUUA_____CA___GUG_AAG__AGUAG_AGU_UCA________CGAA_CA_CGUU____CCG__UGUUAG___CAUGG_UAGAG__UA__GGGUAAAG\n3'-AUU...AAAAA__G_______G_____C____________________AGG_G______AA___A____________ACA___A__________A___U___UUACUUAC____G__A____AGAA___UU______________G_____AA__AG________AAACU...CAA-5'\n_____________|__________________________________________________________________________________________________________________________________________________________|\n_____________179________________________________________________________________________________________________________________________________________________________33\n |
286 -- 292 |
34 -- 40 |
-71.0788 kcal/mol |
32.1142 kcal/mol |
31.2836 kcal/mol |
146 293@LB@ | |@LB@5'-CAA...UUGGC G AU A UGAUU AU AAA G A CAACC CAA A AA G C CAUUAA G G UU UGG G CA CCAAAUCA-3'@LB@ UA UUUUUGU GAUA GAC AUUGA CAUUG G GGCAAG CCA AUGAU GU CAC UUC UUAUC UUA AGU GCUU GU GCAG GGU AUGGUU GUGCU AUUUC AU CUCAUUUC@LB@ || |:||::| :|:| ||| ||||| ||||| | :||||| ||| ||:|| || ||| ||| |:||| |:| ||| |||| || |||: ||: |:::|: ||:|: ||:|| || |:||||||@LB@ AU AGAAGUA UUGU CUG UAACU GUAAC C UCGUUC GGU UAUUA CA GUG AAG AGUAG AGU UCA CGAA CA CGUU CCG UGUUAG CAUGG UAGAG UA GGGUAAAG@LB@3'-AUU...AAAAA G G C AGG G AA A ACA A A U UUACUUAC G A AGAA UU G AA AG AAACU...CAA-5'@LB@ | |@LB@ 179 33@LB@@LB@@LB@Energy -12.38 kcal/mol@LB@Hybridization Energy -71.0788 kcal/mol@LB@Unfolding Energy - mRNA 32.1142 kcal/mol@LB@Unfolding Energy - sRNA 31.2836 kcal/mol@LB@@LB@Position - mRNA 147 -- 292@LB@Position - sRNA 34 -- 178@LB@Position Seed - mRNA 286 -- 292@LB@Position Seed - sRNA 34 -- 40@LB@ |
49 |
0.001587 |
0.1212 |
bsu40240 |
yycS |
-16.07 |
0.019817 |
5 -- 79 |
35 -- 113 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; Product type h: extrachromosomal origin' |
|
_____________4_________________________________________________________________________________80\n_____________|_________________________________________________________________________________|\n_______5'-AAUA_____G______G______UCCUCC____U_______C__U_____________A___U___U____AA___AA_______AUUCA...GCA-3'\n______________CGCUU_UUUCAU_UUCAAA______GAUG_UUUC_UU_CA_UUUU_____ACAA_UGU_CUC_UCUC__UAU__CCUAUUU\n______________|:|||_|:||||_||||||______:|||_:|||_||_||_|:||_____||||_:||_|:|_||||__|||__||:||||\n______________GUGAA_AGAGUA_AAGUUU______UUAC_GAAG_AA_GU_AGAA_____UGUU_GCA_GGG_AGAG__AUA__GGGUAAA\n3'-AUU...CAACA____________G______CAUUAC____C____C__C__U____CCGUU____A___U___U____A____AG_______GAAAC...CAA-5'\n_____________|_________________________________________________________________________________|\n_____________114_______________________________________________________________________________34\n |
73 -- 79 |
35 -- 41 |
-40.7208 kcal/mol |
6.49365 kcal/mol |
21.9183 kcal/mol |
4 80@LB@ | |@LB@ 5'-AAUA G G UCCUCC U C U A U U AA AA AUUCA...GCA-3'@LB@ CGCUU UUUCAU UUCAAA GAUG UUUC UU CA UUUU ACAA UGU CUC UCUC UAU CCUAUUU@LB@ |:||| |:|||| |||||| :||| :||| || || |:|| |||| :|| |:| |||| ||| ||:||||@LB@ GUGAA AGAGUA AAGUUU UUAC GAAG AA GU AGAA UGUU GCA GGG AGAG AUA GGGUAAA@LB@3'-AUU...CAACA G CAUUAC C C C U CCGUU A U U A AG GAAAC...CAA-5'@LB@ | |@LB@ 114 34@LB@@LB@@LB@Energy -16.07 kcal/mol@LB@Hybridization Energy -40.7208 kcal/mol@LB@Unfolding Energy - mRNA 6.49365 kcal/mol@LB@Unfolding Energy - sRNA 21.9183 kcal/mol@LB@@LB@Position - mRNA 5 -- 79@LB@Position - sRNA 35 -- 113@LB@Position Seed - mRNA 73 -- 79@LB@Position Seed - sRNA 35 -- 41@LB@ |
57 |
0.001839 |
0.1212 |
bsu14940 |
ylbA |
-10.08 |
0.303417 |
14 -- 67 |
35 -- 81 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________13___________________________________________68\n_____________|____________________________________________|\n5'-CAU...AAUAC_________AUU______U___C___C___AG____________UGUCA...AAU-3'\n______________CG_UGCAAU____GCAAG_CGG_UGU_AUC__AUCUUUUAUUUU\n______________||_||||||____||||:_|::_:||_|:|__||||:|||||::\n______________GC_ACGUUA____CGUUU_GUU_GCA_UGG__UAGAGAAUAAGG\n3'-AUU...CCGAA__A______GAAC_________A_______G_____________GGUAA...CAA-5'\n_____________|____________________________________________|\n_____________82___________________________________________34\n |
49 -- 55 |
41 -- 47 |
-26.0695 kcal/mol |
9.01529 kcal/mol |
9.64997 kcal/mol |
13 68@LB@ | |@LB@5'-CAU...AAUAC AUU U C C AG UGUCA...AAU-3'@LB@ CG UGCAAU GCAAG CGG UGU AUC AUCUUUUAUUUU@LB@ || |||||| ||||: |:: :|| |:| ||||:|||||::@LB@ GC ACGUUA CGUUU GUU GCA UGG UAGAGAAUAAGG@LB@3'-AUU...CCGAA A GAAC A G GGUAA...CAA-5'@LB@ | |@LB@ 82 34@LB@@LB@@LB@Energy -10.08 kcal/mol@LB@Hybridization Energy -26.0695 kcal/mol@LB@Unfolding Energy - mRNA 9.01529 kcal/mol@LB@Unfolding Energy - sRNA 9.64997 kcal/mol@LB@@LB@Position - mRNA 14 -- 67@LB@Position - sRNA 35 -- 81@LB@Position Seed - mRNA 49 -- 55@LB@Position Seed - sRNA 41 -- 47@LB@ |
116 |
0.005334 |
0.1741 |
bsu30510 |
ytpA |
-10.58 |
0.247824 |
123 -- 177 |
35 -- 87 |
phospholipase YtpA |
|
_____________122______________________________________________________178\n_____________|________________________________________________________|\n5'-AUU...AUAUC______G____C_UUAUAAG_______C__AAG___________CU__________AAAUU...GGC-3'\n______________UGGCUU_UGUU_C_______GGUAGAU_AU___AUUCAUC_CUU__UUCUCUAUUU\n______________||||||_:|||_|_______||:|:|:_||___|::||||_|||__|||:|:||||\n______________ACCGAA_GCAA_G_______CCGUUUG_UA___UGGGUAG_GAA__AAGGGGUAAA\n3'-AUU...UACUU___________C_UUAGAA________U__GCA_______A___U___________GAAAC...CAA-5'\n_____________|________________________________________________________|\n_____________88_______________________________________________________34\n |
171 -- 177 |
35 -- 41 |
-35.4104 kcal/mol |
13.324 kcal/mol |
14.1583 kcal/mol |
122 178@LB@ | |@LB@5'-AUU...AUAUC G C UUAUAAG C AAG CU AAAUU...GGC-3'@LB@ UGGCUU UGUU C GGUAGAU AU AUUCAUC CUU UUCUCUAUUU@LB@ |||||| :||| | ||:|:|: || |::|||| ||| |||:|:||||@LB@ ACCGAA GCAA G CCGUUUG UA UGGGUAG GAA AAGGGGUAAA@LB@3'-AUU...UACUU C UUAGAA U GCA A U GAAAC...CAA-5'@LB@ | |@LB@ 88 34@LB@@LB@@LB@Energy -10.58 kcal/mol@LB@Hybridization Energy -35.4104 kcal/mol@LB@Unfolding Energy - mRNA 13.324 kcal/mol@LB@Unfolding Energy - sRNA 14.1583 kcal/mol@LB@@LB@Position - mRNA 123 -- 177@LB@Position - sRNA 35 -- 87@LB@Position Seed - mRNA 171 -- 177@LB@Position Seed - sRNA 35 -- 41@LB@ |
25 |
0.0006626 |
0.1027 |
bsu07955 |
yfkA |
-14.87 |
0.035327 |
3 -- 70 |
36 -- 108 |
radical SAM protein YfkA |
|
_____________2______________71\n_____________|______________|\n5'-AGU...GCUAC______________AAUCA...ACG-3'\n______________UUGCGAUCUUGGCA\n______________||||:|||||||||\n______________AACGUUAGAACCGU\n3'-AUU...GAAGC______________UUGUU...CAA-5'\n_____________|______________|\n_____________109____________35\n |
130 -- 136 |
66 -- 72 |
-22.3996 kcal/mol |
5.8798 kcal/mol |
4.6863 kcal/mol |
2 71@LB@ | |@LB@5'-AGU...GCUAC AAUCA...ACG-3'@LB@ UUGCGAUCUUGGCA@LB@ ||||:|||||||||@LB@ AACGUUAGAACCGU@LB@3'-AUU...GAAGC UUGUU...CAA-5'@LB@ | |@LB@ 109 35@LB@@LB@@LB@Energy -14.87 kcal/mol@LB@Hybridization Energy -22.3996 kcal/mol@LB@Unfolding Energy - mRNA 5.8798 kcal/mol@LB@Unfolding Energy - sRNA 4.6863 kcal/mol@LB@@LB@Position - mRNA 3 -- 70@LB@Position - sRNA 36 -- 108@LB@Position Seed - mRNA 130 -- 136@LB@Position Seed - sRNA 66 -- 72@LB@ |
97 |
0.003858 |
0.1541 |
bsu32520 |
pucG |
-15.24 |
0.029596 |
117 -- 232 |
36 -- 162 |
purine catabolism protein PucG |
|
_____________116_____________________________________________________________________________________________________________________________________233\n_____________|_______________________________________________________________________________________________________________________________________|\n5'-UGA...AUAUA_______CA____GC____G__CGGC__________CUGA__GAUUUAUUAUACAA___GG_______GA_____GAG_________GU_________A_______A__GAAU___G__________________AAGAA...CGG-3'\n______________CGUCAGC__GACA__UUGA_AU____GUCCGC_GCA____CU______________ACU__CUUA_CU__UAAAG____GAAUGGCU________GUC__GGCAGA_GA____UAU_CA_________CCCCGUU\n______________|:|||:|__||||__||||_||____||||||_|||____|:______________|||__||:|_||__:||||____||||||||________:||__||||:|_:|____||:_||_________||||:||\n______________GUAGUUG__CUGU__AACU_UA____CAGGCG_CGU____GG______________UGA__GAGU_GA__GUUUC____CUUACCGA________UAG__CCGUUU_UU____AUG_GU_________GGGGUAA\n3'-AUU...GAGAA_______UC__________G__A_________U___UCAA__UAUAUUACAACAG____AA____A__A______AUUA________AGCAACGU___AA______G__AGC____G__AGAGAAUAA_______AGAAA...CAA-5'\n_____________|_______________________________________________________________________________________________________________________________________|\n_____________163_____________________________________________________________________________________________________________________________________35\n |
226 -- 232 |
36 -- 42 |
-68.3253 kcal/mol |
25.8271 kcal/mol |
31.2699 kcal/mol |
116 233@LB@ | |@LB@5'-UGA...AUAUA CA GC G CGGC CUGA GAUUUAUUAUACAA GG GA GAG GU A A GAAU G AAGAA...CGG-3'@LB@ CGUCAGC GACA UUGA AU GUCCGC GCA CU ACU CUUA CU UAAAG GAAUGGCU GUC GGCAGA GA UAU CA CCCCGUU@LB@ |:|||:| |||| |||| || |||||| ||| |: ||| ||:| || :|||| |||||||| :|| ||||:| :| ||: || ||||:||@LB@ GUAGUUG CUGU AACU UA CAGGCG CGU GG UGA GAGU GA GUUUC CUUACCGA UAG CCGUUU UU AUG GU GGGGUAA@LB@3'-AUU...GAGAA UC G A U UCAA UAUAUUACAACAG AA A A AUUA AGCAACGU AA G AGC G AGAGAAUAA AGAAA...CAA-5'@LB@ | |@LB@ 163 35@LB@@LB@@LB@Energy -15.24 kcal/mol@LB@Hybridization Energy -68.3253 kcal/mol@LB@Unfolding Energy - mRNA 25.8271 kcal/mol@LB@Unfolding Energy - sRNA 31.2699 kcal/mol@LB@@LB@Position - mRNA 117 -- 232@LB@Position - sRNA 36 -- 162@LB@Position Seed - mRNA 226 -- 232@LB@Position Seed - sRNA 36 -- 42@LB@ |
127 |
0.005895 |
0.1741 |
bsu15640 |
yloA |
-14.75 |
0.037563 |
39 -- 86 |
36 -- 83 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; PubMedId: 11238985 17586671; Product type pf: factor' |
|
_____________38__________________________________________________87\n_____________|___________________________________________________|\n5'-UUA...ACGUA__G_____C____A_______CUGU_____________AUGAAA_______CCGCU...AUA-3'\n______________UU_GUUGC__UCU__GUAAAU____UUGU_CCCAUUUC______CUUCAUU\n______________||_|||||__|||__|:|||:____|:||_|||||:||______|::||||\n______________AA_CAACG__AGA__CGUUUG____AGCA_GGGUAGAG______GGGGUAA\n3'-AUU...UACCG__G_____UU___AC______UU______U________AAUAA________AGAAA...CAA-5'\n_____________|___________________________________________________|\n_____________84__________________________________________________35\n |
80 -- 86 |
36 -- 42 |
-30.597 kcal/mol |
5.41607 kcal/mol |
13.7079 kcal/mol |
38 87@LB@ | |@LB@5'-UUA...ACGUA G C A CUGU AUGAAA CCGCU...AUA-3'@LB@ UU GUUGC UCU GUAAAU UUGU CCCAUUUC CUUCAUU@LB@ || ||||| ||| |:|||: |:|| |||||:|| |::||||@LB@ AA CAACG AGA CGUUUG AGCA GGGUAGAG GGGGUAA@LB@3'-AUU...UACCG G UU AC UU U AAUAA AGAAA...CAA-5'@LB@ | |@LB@ 84 35@LB@@LB@@LB@Energy -14.75 kcal/mol@LB@Hybridization Energy -30.597 kcal/mol@LB@Unfolding Energy - mRNA 5.41607 kcal/mol@LB@Unfolding Energy - sRNA 13.7079 kcal/mol@LB@@LB@Position - mRNA 39 -- 86@LB@Position - sRNA 36 -- 83@LB@Position Seed - mRNA 80 -- 86@LB@Position Seed - sRNA 36 -- 42@LB@ |
8 |
0.0001871 |
0.08823 |
bsu22860 |
yphA |
-19.72 |
0.003251 |
3 -- 123 |
37 -- 178 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; PubMedId: 15849754 16850406; Product type pm: membrane component' |
|
_____________2_______________________________________________________________________________________________________124\n_____________|_______________________________________________________________________________________________________|\n5'-UCG...AAGGC________CCG______________________AC_G__C_______GAUUC______________AAGCUUUGAGUUUUU________CUGUCUU_______GAUCA...UUA-3'\n______________UUGUCGCU___UCA_________UAGUGAAUGG__U_GU_GCGAUCU_____GAC__UC_UGCCUG_______________UCUCUUGU_______UUCCCAU\n______________|||||:||___|||_________||:|||||||__|_||_||:||||_____:||__||_|:||::_______________||||||:|_______|:|||||\n______________AACAGUGA___AGU_________AUUACUUACC__A_CA_CGUUAGA_____UUG__AG_AUGGGU_______________AGAGAAUA_______AGGGGUA\n3'-AUU...AUUAC________AAG___AGAAGUUUC__________GA_G__A_______ACCGU___UU__C___________________________________________AAGAA...CAA-5'\n_____________|_______________________________________________________________________________________________________|\n_____________179_____________________________________________________________________________________________________36\n |
117 -- 123 |
37 -- 43 |
-53.1639 kcal/mol |
19.1133 kcal/mol |
22.4377 kcal/mol |
2 124@LB@ | |@LB@5'-UCG...AAGGC CCG AC G C GAUUC AAGCUUUGAGUUUUU CUGUCUU GAUCA...UUA-3'@LB@ UUGUCGCU UCA UAGUGAAUGG U GU GCGAUCU GAC UC UGCCUG UCUCUUGU UUCCCAU@LB@ |||||:|| ||| ||:||||||| | || ||:|||| :|| || |:||:: ||||||:| |:|||||@LB@ AACAGUGA AGU AUUACUUACC A CA CGUUAGA UUG AG AUGGGU AGAGAAUA AGGGGUA@LB@3'-AUU...AUUAC AAG AGAAGUUUC GA G A ACCGU UU C AAGAA...CAA-5'@LB@ | |@LB@ 179 36@LB@@LB@@LB@Energy -19.72 kcal/mol@LB@Hybridization Energy -53.1639 kcal/mol@LB@Unfolding Energy - mRNA 19.1133 kcal/mol@LB@Unfolding Energy - sRNA 22.4377 kcal/mol@LB@@LB@Position - mRNA 3 -- 123@LB@Position - sRNA 37 -- 178@LB@Position Seed - mRNA 117 -- 123@LB@Position Seed - sRNA 37 -- 43@LB@ |
23 |
0.0006135 |
0.1011 |
bsu23610 |
nudF |
-13.21 |
0.077687 |
6 -- 79 |
37 -- 88 |
adp-ribose pyrophosphatase |
|
_____________5__________________________________________________________________________80\n_____________|__________________________________________________________________________|\n______5'-CUUUU_________AGAUC_______UCA__UAUUG__A_____GU____A_____UUAACUUCGCUCGA_________GCUUU...AAG-3'\n______________AUGGCUUUG_____CAAUCUU___CA_____AA_UGUGC__CCAU_CUCUU______________AUUUCCCAU\n______________|||||||:|_____|||||||___||_____||_:||:|__||||_|||||______________|||:|||||\n______________UACCGAAGC_____GUUAGAA___GU_____UU_GCAUG__GGUA_GAGAA______________UAAGGGGUA\n3'-AUU...UUACU_________AAC_________CC___UUG____A________________________________________AAGAA...CAA-5'\n_____________|__________________________________________________________________________|\n_____________89_________________________________________________________________________36\n |
73 -- 79 |
37 -- 43 |
-36.6547 kcal/mol |
11.779 kcal/mol |
14.1528 kcal/mol |
5 80@LB@ | |@LB@ 5'-CUUUU AGAUC UCA UAUUG A GU A UUAACUUCGCUCGA GCUUU...AAG-3'@LB@ AUGGCUUUG CAAUCUU CA AA UGUGC CCAU CUCUU AUUUCCCAU@LB@ |||||||:| ||||||| || || :||:| |||| ||||| |||:|||||@LB@ UACCGAAGC GUUAGAA GU UU GCAUG GGUA GAGAA UAAGGGGUA@LB@3'-AUU...UUACU AAC CC UUG A AAGAA...CAA-5'@LB@ | |@LB@ 89 36@LB@@LB@@LB@Energy -13.21 kcal/mol@LB@Hybridization Energy -36.6547 kcal/mol@LB@Unfolding Energy - mRNA 11.779 kcal/mol@LB@Unfolding Energy - sRNA 14.1528 kcal/mol@LB@@LB@Position - mRNA 6 -- 79@LB@Position - sRNA 37 -- 88@LB@Position Seed - mRNA 73 -- 79@LB@Position Seed - sRNA 37 -- 43@LB@ |