| 23 |
8.752e-05 |
0.01341 |
b1476 |
fdnI |
-10.32 |
0.092280 |
170 -- 193 |
36 -- 57 |
formate dehydrogenase-N cytochrome B556 (gamma) subunit nitrate-inducible |
|
_____________169_______________________194\n_____________|_________________________|\n5'-CGU...CGAAU_________________ACGA____GAUCA...UUU-3'\n______________AAGGAAGU_GGACGAUG____GGAG\n______________||||||||_:|||:||:____||||\n______________UUCCUUCA_UCUGUUAU____CCUC\n3'-UUU...GUUUU________U________A_______GCGUU...ACG-5'\n_____________|_________________________|\n_____________58________________________35\n |
179 -- 185 |
41 -- 47 |
-22.1274 kcal/mol |
8.02585 kcal/mol |
3.74338 kcal/mol |
169 194@LB@ | |@LB@5'-CGU...CGAAU ACGA GAUCA...UUU-3'@LB@ AAGGAAGU GGACGAUG GGAG@LB@ |||||||| :|||:||: ||||@LB@ UUCCUUCA UCUGUUAU CCUC@LB@3'-UUU...GUUUU U A GCGUU...ACG-5'@LB@ | |@LB@ 58 35@LB@@LB@@LB@Energy -10.32 kcal/mol@LB@Hybridization Energy -22.1274 kcal/mol@LB@Unfolding Energy - mRNA 8.02585 kcal/mol@LB@Unfolding Energy - sRNA 3.74338 kcal/mol@LB@@LB@Position - mRNA 170 -- 193@LB@Position - sRNA 36 -- 57@LB@Position Seed - mRNA 179 -- 185@LB@Position Seed - sRNA 41 -- 47@LB@ |
| 111 |
0.003511 |
0.1114 |
b0077 |
ilvI |
-11.05 |
0.061087 |
188 -- 206 |
36 -- 52 |
acetolactate synthase 3 large subunit |
|
_____________187_________________207\n_____________|___________________|\n5'-AAA...CAAAC__________GCC______AUGUU...UUU-3'\n______________AGUGAGGCAG___AUGGAG\n______________|||:||:||:___||||||\n______________UCAUUCUGUU___UACCUC\n3'-UUU...UUCCU__________A________GCGUU...ACG-5'\n_____________|___________________|\n_____________53__________________35\n |
191 -- 197 |
43 -- 49 |
-19.2253 kcal/mol |
4.72052 kcal/mol |
3.43382 kcal/mol |
187 207@LB@ | |@LB@5'-AAA...CAAAC GCC AUGUU...UUU-3'@LB@ AGUGAGGCAG AUGGAG@LB@ |||:||:||: ||||||@LB@ UCAUUCUGUU UACCUC@LB@3'-UUU...UUCCU A GCGUU...ACG-5'@LB@ | |@LB@ 53 35@LB@@LB@@LB@Energy -11.05 kcal/mol@LB@Hybridization Energy -19.2253 kcal/mol@LB@Unfolding Energy - mRNA 4.72052 kcal/mol@LB@Unfolding Energy - sRNA 3.43382 kcal/mol@LB@@LB@Position - mRNA 188 -- 206@LB@Position - sRNA 36 -- 52@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 43 -- 49@LB@ |
| 177 |
0.007289 |
0.1451 |
b4002 |
zraP |
-14.65 |
0.005839 |
172 -- 192 |
36 -- 54 |
Zn-dependent periplasmic chaperone |
|
_____________171___________________193\n_____________|_____________________|\n5'-AAU...UACCC____________CCAC_____GAUUA...GGC-3'\n______________GAAGUAAGACAA____UGGAG\n______________||||||||||||____|||||\n______________CUUCAUUCUGUU____ACCUC\n3'-UUU...UUUUC____________AU_______GCGUU...ACG-5'\n_____________|_____________________|\n_____________55____________________35\n |
177 -- 183 |
43 -- 49 |
-21.9873 kcal/mol |
3.76916 kcal/mol |
3.53499 kcal/mol |
171 193@LB@ | |@LB@5'-AAU...UACCC CCAC GAUUA...GGC-3'@LB@ GAAGUAAGACAA UGGAG@LB@ |||||||||||| |||||@LB@ CUUCAUUCUGUU ACCUC@LB@3'-UUU...UUUUC AU GCGUU...ACG-5'@LB@ | |@LB@ 55 35@LB@@LB@@LB@Energy -14.65 kcal/mol@LB@Hybridization Energy -21.9873 kcal/mol@LB@Unfolding Energy - mRNA 3.76916 kcal/mol@LB@Unfolding Energy - sRNA 3.53499 kcal/mol@LB@@LB@Position - mRNA 172 -- 192@LB@Position - sRNA 36 -- 54@LB@Position Seed - mRNA 177 -- 183@LB@Position Seed - sRNA 43 -- 49@LB@ |
| 19 |
4.82e-05 |
0.008725 |
b2452 |
eutH |
-15.86 |
0.002353 |
187 -- 206 |
37 -- 56 |
ethanolamine transporter |
|
_____________186___________________207\n_____________|_____________________|\n5'-UUG...CUAAC_______A_____________AUUAA...UCC-3'\n______________AGGGAGU_AAGGCGAUG_GGA\n______________|||:|||_|||:|:||:_|||\n______________UCCUUCA_UUCUGUUAU_CCU\n3'-UUU...UUUUU_________________A___CGCGU...ACG-5'\n_____________|_____________________|\n_____________57____________________36\n |
197 -- 203 |
41 -- 47 |
-22.1606 kcal/mol |
2.59538 kcal/mol |
3.6645 kcal/mol |
186 207@LB@ | |@LB@5'-UUG...CUAAC A AUUAA...UCC-3'@LB@ AGGGAGU AAGGCGAUG GGA@LB@ |||:||| |||:|:||: |||@LB@ UCCUUCA UUCUGUUAU CCU@LB@3'-UUU...UUUUU A CGCGU...ACG-5'@LB@ | |@LB@ 57 36@LB@@LB@@LB@Energy -15.86 kcal/mol@LB@Hybridization Energy -22.1606 kcal/mol@LB@Unfolding Energy - mRNA 2.59538 kcal/mol@LB@Unfolding Energy - sRNA 3.6645 kcal/mol@LB@@LB@Position - mRNA 187 -- 206@LB@Position - sRNA 37 -- 56@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 41 -- 47@LB@ |
| 25 |
0.0001129 |
0.01591 |
b3304 |
rplR |
-13.93 |
0.009701 |
159 -- 205 |
37 -- 94 |
50S ribosomal subunit protein L18 |
|
_____________158___________________________________________________________206\n_____________|_____________________________________________________________|\n5'-AUC...ACGAA________UAC___AGAG______________________________GUA___C______UAAGA...GUC-3'\n______________GUCGUGCG___CAA____GCUA_____________AGAA_GAAGUAAG___ACA_UAUGGA\n______________|||||:||___|||____||||_____________|:||_||||||||___|||_||||||\n______________CAGCAUGC___GUU____CGAU_____________UUUU_CUUCAUUC___UGU_AUACCU\n3'-UUU...AGCCG________UUA___AACA____ACGUCAUUAAGUU____C______________U______CGCGU...ACG-5'\n_____________|_____________________________________________________________|\n_____________95____________________________________________________________36\n |
186 -- 192 |
47 -- 53 |
-32.9659 kcal/mol |
11.091 kcal/mol |
7.93697 kcal/mol |
158 206@LB@ | |@LB@5'-AUC...ACGAA UAC AGAG GUA C UAAGA...GUC-3'@LB@ GUCGUGCG CAA GCUA AGAA GAAGUAAG ACA UAUGGA@LB@ |||||:|| ||| |||| |:|| |||||||| ||| ||||||@LB@ CAGCAUGC GUU CGAU UUUU CUUCAUUC UGU AUACCU@LB@3'-UUU...AGCCG UUA AACA ACGUCAUUAAGUU C U CGCGU...ACG-5'@LB@ | |@LB@ 95 36@LB@@LB@@LB@Energy -13.93 kcal/mol@LB@Hybridization Energy -32.9659 kcal/mol@LB@Unfolding Energy - mRNA 11.091 kcal/mol@LB@Unfolding Energy - sRNA 7.93697 kcal/mol@LB@@LB@Position - mRNA 159 -- 205@LB@Position - sRNA 37 -- 94@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 47 -- 53@LB@ |
| 33 |
0.0002072 |
0.02212 |
b2101 |
yegW |
-12.62 |
0.023301 |
188 -- 205 |
37 -- 56 |
putative DNA-binding transcriptional regulator |
|
_____________187__________________206\n_____________|____________________|\n5'-CGG...CCGGC_____A______________ACAAG...AAA-3'\n______________AGGAA__AAGACAA_AUGGA\n______________|||||__|||||||_|||||\n______________UCCUU__UUCUGUU_UACCU\n3'-UUU...UUUUU_____CA_______A_____CGCGU...ACG-5'\n_____________|____________________|\n_____________57___________________36\n |
194 -- 200 |
43 -- 49 |
-17.4469 kcal/mol |
1.13054 kcal/mol |
3.6645 kcal/mol |
187 206@LB@ | |@LB@5'-CGG...CCGGC A ACAAG...AAA-3'@LB@ AGGAA AAGACAA AUGGA@LB@ ||||| ||||||| |||||@LB@ UCCUU UUCUGUU UACCU@LB@3'-UUU...UUUUU CA A CGCGU...ACG-5'@LB@ | |@LB@ 57 36@LB@@LB@@LB@Energy -12.62 kcal/mol@LB@Hybridization Energy -17.4469 kcal/mol@LB@Unfolding Energy - mRNA 1.13054 kcal/mol@LB@Unfolding Energy - sRNA 3.6645 kcal/mol@LB@@LB@Position - mRNA 188 -- 205@LB@Position - sRNA 37 -- 56@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 43 -- 49@LB@ |
| 40 |
0.000329 |
0.02897 |
b2513 |
yfgM |
-16.53 |
0.001389 |
180 -- 205 |
37 -- 63 |
ancillary SecYEG translocon subunit; putative anti-RcsB factor |
|
_____________179_________________________206\n_____________|___________________________|\n5'-GGC...CUGGG_____________A_______C_____AAUUU...UUG-3'\n______________UUAAGGAAGG_AG_AGGACAG_GUGGA\n______________|:||::||||_||_|:||||:_:||||\n______________AGUUUUUUCC_UC_UUCUGUU_UACCU\n3'-UUU...CAUUA__________U__A_______A_____CGCGU...ACG-5'\n_____________|___________________________|\n_____________64__________________________36\n |
193 -- 199 |
43 -- 49 |
-25.2652 kcal/mol |
3.41523 kcal/mol |
5.31676 kcal/mol |
179 206@LB@ | |@LB@5'-GGC...CUGGG A C AAUUU...UUG-3'@LB@ UUAAGGAAGG AG AGGACAG GUGGA@LB@ |:||::|||| || |:||||: :||||@LB@ AGUUUUUUCC UC UUCUGUU UACCU@LB@3'-UUU...CAUUA U A A CGCGU...ACG-5'@LB@ | |@LB@ 64 36@LB@@LB@@LB@Energy -16.53 kcal/mol@LB@Hybridization Energy -25.2652 kcal/mol@LB@Unfolding Energy - mRNA 3.41523 kcal/mol@LB@Unfolding Energy - sRNA 5.31676 kcal/mol@LB@@LB@Position - mRNA 180 -- 205@LB@Position - sRNA 37 -- 63@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 43 -- 49@LB@ |
| 42 |
0.0003514 |
0.02948 |
b3847 |
pepQ |
-12.53 |
0.024661 |
145 -- 205 |
37 -- 89 |
proline dipeptidase |
|
_____________144______________________________________________________________206\n_____________|________________________________________________________________|\n5'-UUG...UCUGG_________________AGA_____AGACU___GG________ACA____GGUAA___A_____AUCAC...UUC-3'\n______________AUGAA_CGA_UGUGCUA___UGCGG_____UAA__UCAAAAAA___GAAG______AA_AUGGA\n______________|:|||_|:|_|||||||___|||:|_____|||__||||||||___||||______||_|||||\n______________UGCUU_GUU_ACACGAU___ACGUC_____AUU__AGUUUUUU___CUUC______UU_UACCU\n3'-UUU...CAGCA_____A___A_______________________A_________C______AUUCUG__A_____CGCGU...ACG-5'\n_____________|________________________________________________________________|\n_____________90_______________________________________________________________36\n |
153 -- 159 |
73 -- 79 |
-31.666 kcal/mol |
11.3417 kcal/mol |
7.78939 kcal/mol |
144 206@LB@ | |@LB@5'-UUG...UCUGG AGA AGACU GG ACA GGUAA A AUCAC...UUC-3'@LB@ AUGAA CGA UGUGCUA UGCGG UAA UCAAAAAA GAAG AA AUGGA@LB@ |:||| |:| ||||||| |||:| ||| |||||||| |||| || |||||@LB@ UGCUU GUU ACACGAU ACGUC AUU AGUUUUUU CUUC UU UACCU@LB@3'-UUU...CAGCA A A A C AUUCUG A CGCGU...ACG-5'@LB@ | |@LB@ 90 36@LB@@LB@@LB@Energy -12.53 kcal/mol@LB@Hybridization Energy -31.666 kcal/mol@LB@Unfolding Energy - mRNA 11.3417 kcal/mol@LB@Unfolding Energy - sRNA 7.78939 kcal/mol@LB@@LB@Position - mRNA 145 -- 205@LB@Position - sRNA 37 -- 89@LB@Position Seed - mRNA 153 -- 159@LB@Position Seed - sRNA 73 -- 79@LB@ |
| 65 |
0.001098 |
0.05953 |
b1479 |
maeA |
-10.62 |
0.077885 |
180 -- 205 |
37 -- 65 |
malate dehydrogenase decarboxylating NAD-requiring; malic enzyme |
|
_____________179___________________________206\n_____________|_____________________________|\n5'-UAG...UGGAU_______________________C_____ACCAA...GCA-3'\n______________AUUCAAAAAAG__AGUGAG_UGA_AUGGA\n______________|||||||||||__|||:||_::|_|||||\n______________UAAGUUUUUUC__UCAUUC_GUU_UACCU\n3'-UUU...GUCAU___________CU______U___A_____CGCGU...ACG-5'\n_____________|_____________________________|\n_____________66____________________________36\n |
184 -- 190 |
55 -- 61 |
-21.4117 kcal/mol |
4.89609 kcal/mol |
5.88101 kcal/mol |
179 206@LB@ | |@LB@5'-UAG...UGGAU C ACCAA...GCA-3'@LB@ AUUCAAAAAAG AGUGAG UGA AUGGA@LB@ ||||||||||| |||:|| ::| |||||@LB@ UAAGUUUUUUC UCAUUC GUU UACCU@LB@3'-UUU...GUCAU CU U A CGCGU...ACG-5'@LB@ | |@LB@ 66 36@LB@@LB@@LB@Energy -10.62 kcal/mol@LB@Hybridization Energy -21.4117 kcal/mol@LB@Unfolding Energy - mRNA 4.89609 kcal/mol@LB@Unfolding Energy - sRNA 5.88101 kcal/mol@LB@@LB@Position - mRNA 180 -- 205@LB@Position - sRNA 37 -- 65@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 55 -- 61@LB@ |
| 68 |
0.001184 |
0.06134 |
b3188 |
sfsB |
-9.82 |
0.121108 |
186 -- 205 |
37 -- 57 |
malPQ operon transcriptional activator |
|
_____________185___________________206\n_____________|_____________________|\n5'-CGG...AACUU____________AAAA_____AAGUA...UGA-3'\n______________AAGG_AGUGAGG____AUGGA\n______________||||_|||:||:____|||||\n______________UUCC_UCAUUCU____UACCU\n3'-UUU...GUUUU____U_______GUUA_____CGCGU...ACG-5'\n_____________|_____________________|\n_____________58____________________36\n |
190 -- 196 |
46 -- 52 |
-17.294 kcal/mol |
3.7439 kcal/mol |
3.68958 kcal/mol |
185 206@LB@ | |@LB@5'-CGG...AACUU AAAA AAGUA...UGA-3'@LB@ AAGG AGUGAGG AUGGA@LB@ |||| |||:||: |||||@LB@ UUCC UCAUUCU UACCU@LB@3'-UUU...GUUUU U GUUA CGCGU...ACG-5'@LB@ | |@LB@ 58 36@LB@@LB@@LB@Energy -9.82 kcal/mol@LB@Hybridization Energy -17.294 kcal/mol@LB@Unfolding Energy - mRNA 3.7439 kcal/mol@LB@Unfolding Energy - sRNA 3.68958 kcal/mol@LB@@LB@Position - mRNA 186 -- 205@LB@Position - sRNA 37 -- 57@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 46 -- 52@LB@ |
