| 100 |
0.003303 |
0.1114 |
b1126 |
potA |
-10.42 |
0.087379 |
73 -- 89 |
61 -- 76 |
spermidine/putrescine ABC transporter ATPase |
|
_____________72________________90\n_____________|_________________|\n5'-CAA...AUAAA____A_C__________CAACA...UUC-3'\n______________GCUA_G_CAGUAAUUCA\n______________||||_|_||||||||||\n______________CGAU_C_GUCAUUAAGU\n3'-UUU...UAACA____A____________UUUUU...ACG-5'\n_____________|_________________|\n_____________77________________60\n |
83 -- 89 |
61 -- 67 |
-17.6149 kcal/mol |
3.71554 kcal/mol |
3.47887 kcal/mol |
72 90@LB@ | |@LB@5'-CAA...AUAAA A C CAACA...UUC-3'@LB@ GCUA G CAGUAAUUCA@LB@ |||| | ||||||||||@LB@ CGAU C GUCAUUAAGU@LB@3'-UUU...UAACA A UUUUU...ACG-5'@LB@ | |@LB@ 77 60@LB@@LB@@LB@Energy -10.42 kcal/mol@LB@Hybridization Energy -17.6149 kcal/mol@LB@Unfolding Energy - mRNA 3.71554 kcal/mol@LB@Unfolding Energy - sRNA 3.47887 kcal/mol@LB@@LB@Position - mRNA 73 -- 89@LB@Position - sRNA 61 -- 76@LB@Position Seed - mRNA 83 -- 89@LB@Position Seed - sRNA 61 -- 67@LB@ |
| 138 |
0.00525 |
0.1336 |
b0031 |
dapB |
-12.01 |
0.034078 |
16 -- 66 |
61 -- 114 |
dihydrodipicolinate reductase |
|
_____________15____________________________________________________________67\n_____________|_____________________________________________________________|\n5'-GUG...GAGGU__________________________ACCU____CAUGUU_______________C_____UCGAC...UGG-3'\n______________GCUGGCUC________UGGCGUCGUA____GUCA______AUUG_GC_AUGCAGU_AUUCA\n______________||:|:|||________:|||||||||____:|||______||||_||_|||||||_|||||\n______________CGGCUGAG________GCCGCAGCAU____UAGU______UAAC_CG_UACGUCA_UAAGU\n___3'-UUUUUUUU________UAGUUUCA__________GCU_______________A__A_______U_____UUUUU...ACG-5'\n_____________|_____________________________________________________________|\n_____________115___________________________________________________________60\n |
54 -- 60 |
67 -- 73 |
-49.0979 kcal/mol |
18.4253 kcal/mol |
18.6631 kcal/mol |
15 67@LB@ | |@LB@5'-GUG...GAGGU ACCU CAUGUU C UCGAC...UGG-3'@LB@ GCUGGCUC UGGCGUCGUA GUCA AUUG GC AUGCAGU AUUCA@LB@ ||:|:||| :||||||||| :||| |||| || ||||||| |||||@LB@ CGGCUGAG GCCGCAGCAU UAGU UAAC CG UACGUCA UAAGU@LB@ 3'-UUUUUUUU UAGUUUCA GCU A A U UUUUU...ACG-5'@LB@ | |@LB@ 115 60@LB@@LB@@LB@Energy -12.01 kcal/mol@LB@Hybridization Energy -49.0979 kcal/mol@LB@Unfolding Energy - mRNA 18.4253 kcal/mol@LB@Unfolding Energy - sRNA 18.6631 kcal/mol@LB@@LB@Position - mRNA 16 -- 66@LB@Position - sRNA 61 -- 114@LB@Position Seed - mRNA 54 -- 60@LB@Position Seed - sRNA 67 -- 73@LB@ |
| 114 |
0.00366 |
0.1131 |
b0162 |
cdaR |
-8.46 |
0.240590 |
33 -- 47 |
64 -- 77 |
carbohydrate diacid regulon transcriptional regulator; autoregulator |
|
_____________32______________48\n_____________|_______________|\n5'-CAA...CUACC____A__________CUCCC...GGC-3'\n______________UGUU_AUGCAGUAAU\n______________||:|_||||||||||\n______________ACGA_UACGUCAUUA\n3'-UUU...UUAAC_______________AGUUU...ACG-5'\n_____________|_______________|\n_____________78______________63\n |
41 -- 47 |
64 -- 70 |
-14.8052 kcal/mol |
3.39589 kcal/mol |
2.94867 kcal/mol |
32 48@LB@ | |@LB@5'-CAA...CUACC A CUCCC...GGC-3'@LB@ UGUU AUGCAGUAAU@LB@ ||:| ||||||||||@LB@ ACGA UACGUCAUUA@LB@3'-UUU...UUAAC AGUUU...ACG-5'@LB@ | |@LB@ 78 63@LB@@LB@@LB@Energy -8.46 kcal/mol@LB@Hybridization Energy -14.8052 kcal/mol@LB@Unfolding Energy - mRNA 3.39589 kcal/mol@LB@Unfolding Energy - sRNA 2.94867 kcal/mol@LB@@LB@Position - mRNA 33 -- 47@LB@Position - sRNA 64 -- 77@LB@Position Seed - mRNA 41 -- 47@LB@Position Seed - sRNA 64 -- 70@LB@ |
| 182 |
0.007798 |
0.1509 |
b3523 |
yhjE |
-11.78 |
0.039321 |
145 -- 165 |
64 -- 85 |
putative MFS transporter; membrane protein |
|
_____________144____________________166\n_____________|______________________|\n5'-AAC...GAAAU____C__U______________AUGGC...UUG-3'\n______________AUCA_UU_UGCUGUGC_GUAAU\n______________||||_||_||||:|||_|||||\n______________UAGU_AA_ACGAUACG_CAUUA\n3'-UUU...AUGCU____U__C________U_____AGUUU...ACG-5'\n_____________|______________________|\n_____________86_____________________63\n |
154 -- 160 |
70 -- 76 |
-18.5967 kcal/mol |
3.10692 kcal/mol |
3.70798 kcal/mol |
144 166@LB@ | |@LB@5'-AAC...GAAAU C U AUGGC...UUG-3'@LB@ AUCA UU UGCUGUGC GUAAU@LB@ |||| || ||||:||| |||||@LB@ UAGU AA ACGAUACG CAUUA@LB@3'-UUU...AUGCU U C U AGUUU...ACG-5'@LB@ | |@LB@ 86 63@LB@@LB@@LB@Energy -11.78 kcal/mol@LB@Hybridization Energy -18.5967 kcal/mol@LB@Unfolding Energy - mRNA 3.10692 kcal/mol@LB@Unfolding Energy - sRNA 3.70798 kcal/mol@LB@@LB@Position - mRNA 145 -- 165@LB@Position - sRNA 64 -- 85@LB@Position Seed - mRNA 154 -- 160@LB@Position Seed - sRNA 70 -- 76@LB@ |
| 17 |
4.003e-05 |
0.007917 |
b1066 |
rimJ |
-10.62 |
0.078044 |
194 -- 220 |
65 -- 91 |
ribosomal-protein-S5-alanine N-acetyltransferase |
|
_____________193___________________________221\n_____________|_____________________________|\n5'-AUU...AGUAG____A____GU__________C_______CGUGC...AUU-3'\n______________GUAU_GAAU___UUG_GCUAU_GCAGUAA\n______________|||:_||||___|||_|||||_|||||||\n______________CAUG_CUUA___AAC_CGAUA_CGUCAUU\n3'-UUU...CGCAG_________GUU___A_____________AAGUU...ACG-5'\n_____________|_____________________________|\n_____________92____________________________64\n |
214 -- 220 |
65 -- 71 |
-21.0331 kcal/mol |
5.8812 kcal/mol |
4.53558 kcal/mol |
193 221@LB@ | |@LB@5'-AUU...AGUAG A GU C CGUGC...AUU-3'@LB@ GUAU GAAU UUG GCUAU GCAGUAA@LB@ |||: |||| ||| ||||| |||||||@LB@ CAUG CUUA AAC CGAUA CGUCAUU@LB@3'-UUU...CGCAG GUU A AAGUU...ACG-5'@LB@ | |@LB@ 92 64@LB@@LB@@LB@Energy -10.62 kcal/mol@LB@Hybridization Energy -21.0331 kcal/mol@LB@Unfolding Energy - mRNA 5.8812 kcal/mol@LB@Unfolding Energy - sRNA 4.53558 kcal/mol@LB@@LB@Position - mRNA 194 -- 220@LB@Position - sRNA 65 -- 91@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 65 -- 71@LB@ |
| 18 |
4.045e-05 |
0.007917 |
b0723 |
sdhA |
-14.73 |
0.005501 |
172 -- 195 |
67 -- 90 |
succinate dehydrogenase flavoprotein subunit |
|
_____________171______________________196\n_____________|________________________|\n5'-GGU...UGAUU________C______G____G___GUGUG...GUG-3'\n______________UAUGGAUU_GUUGUG_UGUG_GGU\n______________||:|:||:_:|||||_|:||_:||\n______________AUGCUUAG_UAACAC_AUAC_UCA\n3'-UUU...GCAGC________U______G____G___UUAAG...ACG-5'\n_____________|________________________|\n_____________91_______________________66\n |
173 -- 179 |
83 -- 89 |
-23.9499 kcal/mol |
4.69238 kcal/mol |
4.5307 kcal/mol |
171 196@LB@ | |@LB@5'-GGU...UGAUU C G G GUGUG...GUG-3'@LB@ UAUGGAUU GUUGUG UGUG GGU@LB@ ||:|:||: :||||| |:|| :||@LB@ AUGCUUAG UAACAC AUAC UCA@LB@3'-UUU...GCAGC U G G UUAAG...ACG-5'@LB@ | |@LB@ 91 66@LB@@LB@@LB@Energy -14.73 kcal/mol@LB@Hybridization Energy -23.9499 kcal/mol@LB@Unfolding Energy - mRNA 4.69238 kcal/mol@LB@Unfolding Energy - sRNA 4.5307 kcal/mol@LB@@LB@Position - mRNA 172 -- 195@LB@Position - sRNA 67 -- 90@LB@Position Seed - mRNA 173 -- 179@LB@Position Seed - sRNA 83 -- 89@LB@ |
| 31 |
0.0001757 |
0.01997 |
b4222 |
ytfP |
-8.86 |
0.198985 |
202 -- 224 |
67 -- 90 |
GGCT-like protein |
|
_____________201_______________________225\n_____________|_________________________|\n5'-ACC...AGCAA_______AU_________CG_____UUACG...ACC-3'\n______________UGCGAAU___UUGU_CUA__GCAGU\n______________|:|||||___||||_|||__|||||\n______________AUGCUUA___AACA_GAU__CGUCA\n3'-UUU...GCAGC_______GUU____C___A______UUAAG...ACG-5'\n_____________|_________________________|\n_____________91________________________66\n |
202 -- 208 |
84 -- 90 |
-18.173 kcal/mol |
4.78992 kcal/mol |
4.5307 kcal/mol |
201 225@LB@ | |@LB@5'-ACC...AGCAA AU CG UUACG...ACC-3'@LB@ UGCGAAU UUGU CUA GCAGU@LB@ |:||||| |||| ||| |||||@LB@ AUGCUUA AACA GAU CGUCA@LB@3'-UUU...GCAGC GUU C A UUAAG...ACG-5'@LB@ | |@LB@ 91 66@LB@@LB@@LB@Energy -8.86 kcal/mol@LB@Hybridization Energy -18.173 kcal/mol@LB@Unfolding Energy - mRNA 4.78992 kcal/mol@LB@Unfolding Energy - sRNA 4.5307 kcal/mol@LB@@LB@Position - mRNA 202 -- 224@LB@Position - sRNA 67 -- 90@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 84 -- 90@LB@ |
| 30 |
0.0001707 |
0.01997 |
b1847 |
yebF |
-12.53 |
0.024655 |
175 -- 194 |
68 -- 88 |
extracellular Colicin M immunity family protein |
|
_____________174___________________195\n_____________|_____________________|\n5'-AAC...UCUCC__________________G__AAAAA...CAA-3'\n______________UGAAUC_AUUGUGCUAUG_AG\n______________:|||||_|||||||||||_||\n______________GCUUAG_UAACACGAUAC_UC\n3'-UUU...AGCAU______U___________G__AUUAA...ACG-5'\n_____________|_____________________|\n_____________89____________________67\n |
185 -- 191 |
71 -- 77 |
-25.1828 kcal/mol |
8.15856 kcal/mol |
4.50023 kcal/mol |
174 195@LB@ | |@LB@5'-AAC...UCUCC G AAAAA...CAA-3'@LB@ UGAAUC AUUGUGCUAUG AG@LB@ :||||| ||||||||||| ||@LB@ GCUUAG UAACACGAUAC UC@LB@3'-UUU...AGCAU U G AUUAA...ACG-5'@LB@ | |@LB@ 89 67@LB@@LB@@LB@Energy -12.53 kcal/mol@LB@Hybridization Energy -25.1828 kcal/mol@LB@Unfolding Energy - mRNA 8.15856 kcal/mol@LB@Unfolding Energy - sRNA 4.50023 kcal/mol@LB@@LB@Position - mRNA 175 -- 194@LB@Position - sRNA 68 -- 88@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 53 |
0.0006788 |
0.04512 |
b3949 |
frwC |
-10.17 |
0.100438 |
200 -- 218 |
68 -- 90 |
putative enzyme IIC component of PTS |
|
_____________199_____________________219\n_____________|_______________________|\n5'-UUG...CAGCU_______G_______________AUCCU...UGG-3'\n______________UAUGAAU_AGUUG____GUGCAG\n______________||:||||_|:|||____:|||||\n______________AUGCUUA_UUAAC____UACGUC\n3'-UUU...GCAGC_______G_____ACGA______AUUAA...ACG-5'\n_____________|_______________________|\n_____________91______________________67\n |
200 -- 206 |
84 -- 90 |
-18.2816 kcal/mol |
3.60123 kcal/mol |
4.51505 kcal/mol |
199 219@LB@ | |@LB@5'-UUG...CAGCU G AUCCU...UGG-3'@LB@ UAUGAAU AGUUG GUGCAG@LB@ ||:|||| |:||| :|||||@LB@ AUGCUUA UUAAC UACGUC@LB@3'-UUU...GCAGC G ACGA AUUAA...ACG-5'@LB@ | |@LB@ 91 67@LB@@LB@@LB@Energy -10.17 kcal/mol@LB@Hybridization Energy -18.2816 kcal/mol@LB@Unfolding Energy - mRNA 3.60123 kcal/mol@LB@Unfolding Energy - sRNA 4.51505 kcal/mol@LB@@LB@Position - mRNA 200 -- 218@LB@Position - sRNA 68 -- 90@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 84 -- 90@LB@ |
| 87 |
0.002406 |
0.09689 |
b3317 |
rplB |
-11.53 |
0.045926 |
6 -- 24 |
68 -- 86 |
50S ribosomal subunit protein L2 |
|
_____________5___________________25\n_____________|___________________|\n______5'-GCAGA______AGC__________AAACU...UGC-3'\n______________AAUCAA___UGCUGUGCAG\n______________||||||___||||:|||||\n______________UUAGUU___ACGAUACGUC\n3'-UUU...CAUGC______AAC__________AUUAA...ACG-5'\n_____________|___________________|\n_____________87__________________67\n |
18 -- 24 |
68 -- 74 |
-20.8348 kcal/mol |
5.62876 kcal/mol |
3.67996 kcal/mol |
5 25@LB@ | |@LB@ 5'-GCAGA AGC AAACU...UGC-3'@LB@ AAUCAA UGCUGUGCAG@LB@ |||||| ||||:|||||@LB@ UUAGUU ACGAUACGUC@LB@3'-UUU...CAUGC AAC AUUAA...ACG-5'@LB@ | |@LB@ 87 67@LB@@LB@@LB@Energy -11.53 kcal/mol@LB@Hybridization Energy -20.8348 kcal/mol@LB@Unfolding Energy - mRNA 5.62876 kcal/mol@LB@Unfolding Energy - sRNA 3.67996 kcal/mol@LB@@LB@Position - mRNA 6 -- 24@LB@Position - sRNA 68 -- 86@LB@Position Seed - mRNA 18 -- 24@LB@Position Seed - sRNA 68 -- 74@LB@ |
