| 35 |
0.0002679 |
0.02697 |
b2152 |
yeiB |
-13.89 |
0.009991 |
187 -- 220 |
20 -- 59 |
DUF418 family putative inner membrane protein |
|
_____________186______________________________________221\n_____________|________________________________________|\n5'-GCU...UGAUU______C_______ACC________________A______CGAUU...AUC-3'\n______________AAAAGG____AGGA____AUGGAGCGCAACGUC___CGCU\n______________||||||____|:||____|||||||||||||:|___||||\n______________UUUUCC____UUCU____UACCUCGCGUUGCGG___GCGA\n3'-UUU...AAGUU______UUCA____GUUA_______________GUA____ACUGC...ACG-5'\n_____________|________________________________________|\n_____________60_______________________________________19\n |
209 -- 215 |
27 -- 33 |
-38.6917 kcal/mol |
10.9969 kcal/mol |
13.8113 kcal/mol |
186 221@LB@ | |@LB@5'-GCU...UGAUU C ACC A CGAUU...AUC-3'@LB@ AAAAGG AGGA AUGGAGCGCAACGUC CGCU@LB@ |||||| |:|| |||||||||||||:| ||||@LB@ UUUUCC UUCU UACCUCGCGUUGCGG GCGA@LB@3'-UUU...AAGUU UUCA GUUA GUA ACUGC...ACG-5'@LB@ | |@LB@ 60 19@LB@@LB@@LB@Energy -13.89 kcal/mol@LB@Hybridization Energy -38.6917 kcal/mol@LB@Unfolding Energy - mRNA 10.9969 kcal/mol@LB@Unfolding Energy - sRNA 13.8113 kcal/mol@LB@@LB@Position - mRNA 187 -- 220@LB@Position - sRNA 20 -- 59@LB@Position Seed - mRNA 209 -- 215@LB@Position Seed - sRNA 27 -- 33@LB@ |
| 115 |
0.003699 |
0.1133 |
b3343 |
tusB |
-8.43 |
0.243717 |
216 -- 222 |
20 -- 26 |
mnm(5)-s(2)U34-tRNA synthesis 2-thiolation protein |
|
_____________215_____223\n_____________|_______|\n5'-GCU...CAUUA_______CACCC...GCG-3'\n______________CAUCGCU\n______________|||||||\n______________GUAGCGA\n3'-UUU...UGCGG_______ACUGC...ACG-5'\n_____________|_______|\n_____________27______19\n |
216 -- 222 |
20 -- 26 |
-9.55221 kcal/mol |
1.0434 kcal/mol |
0.0768517 kcal/mol |
215 223@LB@ | |@LB@5'-GCU...CAUUA CACCC...GCG-3'@LB@ CAUCGCU@LB@ |||||||@LB@ GUAGCGA@LB@3'-UUU...UGCGG ACUGC...ACG-5'@LB@ | |@LB@ 27 19@LB@@LB@@LB@Energy -8.43 kcal/mol@LB@Hybridization Energy -9.55221 kcal/mol@LB@Unfolding Energy - mRNA 1.0434 kcal/mol@LB@Unfolding Energy - sRNA 0.0768517 kcal/mol@LB@@LB@Position - mRNA 216 -- 222@LB@Position - sRNA 20 -- 26@LB@Position Seed - mRNA 216 -- 222@LB@Position Seed - sRNA 20 -- 26@LB@ |
| 127 |
0.004567 |
0.1258 |
b2320 |
pdxB |
-8.62 |
0.223386 |
291 -- 299 |
20 -- 28 |
erythronate-4-phosphate dehydrogenase |
|
_____________290_______300\n_____________|_________|\n5'-ACG...CAAUC_________C-3'\n______________CCCGUCGCU\n______________|||:|||||\n______________GGGUAGCGA\n3'-UUU...GUUGC_________ACUGC...ACG-5'\n_____________|_________|\n_____________29________19\n |
293 -- 299 |
20 -- 26 |
-15.7186 kcal/mol |
1.54056 kcal/mol |
5.56153 kcal/mol |
290 300@LB@ | |@LB@5'-ACG...CAAUC C-3'@LB@ CCCGUCGCU@LB@ |||:|||||@LB@ GGGUAGCGA@LB@3'-UUU...GUUGC ACUGC...ACG-5'@LB@ | |@LB@ 29 19@LB@@LB@@LB@Energy -8.62 kcal/mol@LB@Hybridization Energy -15.7186 kcal/mol@LB@Unfolding Energy - mRNA 1.54056 kcal/mol@LB@Unfolding Energy - sRNA 5.56153 kcal/mol@LB@@LB@Position - mRNA 291 -- 299@LB@Position - sRNA 20 -- 28@LB@Position Seed - mRNA 293 -- 299@LB@Position Seed - sRNA 20 -- 26@LB@ |
| 137 |
0.005185 |
0.1333 |
b2256 |
arnD |
-10.61 |
0.078275 |
62 -- 106 |
20 -- 56 |
undecaprenyl phosphate-alpha-L-ara4FN deformylase |
|
_____________61____________________________________________107\n_____________|_____________________________________________|\n5'-UUC...AUAUC____C____A___UC___AACC____AUCC__________C____GCCUG...AGG-3'\n______________AGGA_GUAG_GCA__GUA____GAGC____GCAAUGCCCA_CGCU\n______________||||_|||:_:||__:||____||||____||||:|||||_||||\n______________UCCU_CAUU_UGU__UAU____CUCG____CGUUGCGGGU_GCGA\n3'-UUU...UUUUU____U____C________AC____________________A____ACUGC...ACG-5'\n_____________|_____________________________________________|\n_____________57____________________________________________19\n |
95 -- 101 |
25 -- 31 |
-37.0072 kcal/mol |
12.6417 kcal/mol |
13.7538 kcal/mol |
61 107@LB@ | |@LB@5'-UUC...AUAUC C A UC AACC AUCC C GCCUG...AGG-3'@LB@ AGGA GUAG GCA GUA GAGC GCAAUGCCCA CGCU@LB@ |||| |||: :|| :|| |||| ||||:||||| ||||@LB@ UCCU CAUU UGU UAU CUCG CGUUGCGGGU GCGA@LB@3'-UUU...UUUUU U C AC A ACUGC...ACG-5'@LB@ | |@LB@ 57 19@LB@@LB@@LB@Energy -10.61 kcal/mol@LB@Hybridization Energy -37.0072 kcal/mol@LB@Unfolding Energy - mRNA 12.6417 kcal/mol@LB@Unfolding Energy - sRNA 13.7538 kcal/mol@LB@@LB@Position - mRNA 62 -- 106@LB@Position - sRNA 20 -- 56@LB@Position Seed - mRNA 95 -- 101@LB@Position Seed - sRNA 25 -- 31@LB@ |
| 141 |
0.005411 |
0.1351 |
b3260 |
dusB |
-10.20 |
0.098848 |
236 -- 254 |
20 -- 38 |
tRNA-dihydrouridine synthase B |
|
_____________235_________________255\n_____________|___________________|\n5'-ACU...CGCCU__U____________G___GGCAU...GAG-3'\n______________GA_CGCAGCGCCCAU_GCU\n______________||_||||:|||||||_|||\n______________CU_GCGUUGCGGGUA_CGA\n3'-UUU...UAUAC__C____________G___ACUGC...ACG-5'\n_____________|___________________|\n_____________39__________________19\n |
244 -- 250 |
24 -- 30 |
-30.8965 kcal/mol |
8.5282 kcal/mol |
12.1733 kcal/mol |
235 255@LB@ | |@LB@5'-ACU...CGCCU U G GGCAU...GAG-3'@LB@ GA CGCAGCGCCCAU GCU@LB@ || ||||:||||||| |||@LB@ CU GCGUUGCGGGUA CGA@LB@3'-UUU...UAUAC C G ACUGC...ACG-5'@LB@ | |@LB@ 39 19@LB@@LB@@LB@Energy -10.20 kcal/mol@LB@Hybridization Energy -30.8965 kcal/mol@LB@Unfolding Energy - mRNA 8.5282 kcal/mol@LB@Unfolding Energy - sRNA 12.1733 kcal/mol@LB@@LB@Position - mRNA 236 -- 254@LB@Position - sRNA 20 -- 38@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 197 |
0.008895 |
0.1548 |
b2844 |
yqeF |
-5.48 |
0.714940 |
222 -- 246 |
20 -- 39 |
short chain acyltransferase |
|
_____________221_______________________247\n_____________|_________________________|\n5'-CCA...UUGUC_______UACG___A_______G__GCUUU...UCG-3'\n______________GGGGCGU____GAC_CCUAUCG_CU\n______________||:|||:____:||_||:||||_||\n______________CCUCGCG____UUG_GGGUAGC_GA\n3'-UUU...UUAUA______________C__________ACUGC...ACG-5'\n_____________|_________________________|\n_____________40________________________19\n |
237 -- 243 |
22 -- 28 |
-25.7666 kcal/mol |
8.11246 kcal/mol |
12.1811 kcal/mol |
221 247@LB@ | |@LB@5'-CCA...UUGUC UACG A G GCUUU...UCG-3'@LB@ GGGGCGU GAC CCUAUCG CU@LB@ ||:|||: :|| ||:|||| ||@LB@ CCUCGCG UUG GGGUAGC GA@LB@3'-UUU...UUAUA C ACUGC...ACG-5'@LB@ | |@LB@ 40 19@LB@@LB@@LB@Energy -5.48 kcal/mol@LB@Hybridization Energy -25.7666 kcal/mol@LB@Unfolding Energy - mRNA 8.11246 kcal/mol@LB@Unfolding Energy - sRNA 12.1811 kcal/mol@LB@@LB@Position - mRNA 222 -- 246@LB@Position - sRNA 20 -- 39@LB@Position Seed - mRNA 237 -- 243@LB@Position Seed - sRNA 22 -- 28@LB@ |
| 1 |
1.057e-08 |
3.724e-05 |
b0889 |
lrp |
-13.58 |
0.012310 |
166 -- 227 |
21 -- 70 |
leucine-responsive global transcriptional regulator |
|
_____________165_______________________________________________________________228\n_____________|_________________________________________________________________|\n5'-GUG...UCAGA___GAG____________AUAC__A_________AUAA___U__AUA___AGAA________G__AAAGA...AGC-3'\n______________CAG_____UAGGGAAGGA____AG_GAGACAAUA____UGG_AG___GCA____GCGCCC_U_GC\n______________|||_____:|:::|||||____||_:||||||||____|||_||___|||____:|||||_|_||\n______________GUC_____GUUUUUUCCU____UC_UUCUGUUAU____ACC_UC___CGU____UGCGGG_A_CG\n3'-UUU...GAUAC___AUUAA________________A___________________G_______________U_G__AACUG...ACG-5'\n_____________|_________________________________________________________________|\n_____________71________________________________________________________________20\n |
191 -- 197 |
41 -- 47 |
-39.3483 kcal/mol |
8.89245 kcal/mol |
16.878 kcal/mol |
165 228@LB@ | |@LB@5'-GUG...UCAGA GAG AUAC A AUAA U AUA AGAA G AAAGA...AGC-3'@LB@ CAG UAGGGAAGGA AG GAGACAAUA UGG AG GCA GCGCCC U GC@LB@ ||| :|:::||||| || :|||||||| ||| || ||| :||||| | ||@LB@ GUC GUUUUUUCCU UC UUCUGUUAU ACC UC CGU UGCGGG A CG@LB@3'-UUU...GAUAC AUUAA A G U G AACUG...ACG-5'@LB@ | |@LB@ 71 20@LB@@LB@@LB@Energy -13.58 kcal/mol@LB@Hybridization Energy -39.3483 kcal/mol@LB@Unfolding Energy - mRNA 8.89245 kcal/mol@LB@Unfolding Energy - sRNA 16.878 kcal/mol@LB@@LB@Position - mRNA 166 -- 227@LB@Position - sRNA 21 -- 70@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 41 -- 47@LB@ |
| 64 |
0.001067 |
0.05874 |
b3340 |
fusA |
-13.60 |
0.012173 |
191 -- 223 |
21 -- 57 |
protein chain elongation factor EF-G GTP-binding |
|
_____________190_____________________________________224\n_____________|_______________________________________|\n5'-AAC...UAAAC____________________CUC__A____A________ACGCU...ACA-3'\n______________GAGGAA_____ACAA_AUGG___GU_CAAC_CCCAUCGC\n______________:|||||_____||||_||||___|:_||||_||||||||\n______________UUCCUU_____UGUU_UACC___CG_GUUG_GGGUAGCG\n3'-UUU...GUUUU______CAUUC____A____U____C____C________AACUG...ACG-5'\n_____________|_______________________________________|\n_____________58______________________________________20\n |
217 -- 223 |
21 -- 27 |
-33.2696 kcal/mol |
6.00361 kcal/mol |
13.6712 kcal/mol |
190 224@LB@ | |@LB@5'-AAC...UAAAC CUC A A ACGCU...ACA-3'@LB@ GAGGAA ACAA AUGG GU CAAC CCCAUCGC@LB@ :||||| |||| |||| |: |||| ||||||||@LB@ UUCCUU UGUU UACC CG GUUG GGGUAGCG@LB@3'-UUU...GUUUU CAUUC A U C C AACUG...ACG-5'@LB@ | |@LB@ 58 20@LB@@LB@@LB@Energy -13.60 kcal/mol@LB@Hybridization Energy -33.2696 kcal/mol@LB@Unfolding Energy - mRNA 6.00361 kcal/mol@LB@Unfolding Energy - sRNA 13.6712 kcal/mol@LB@@LB@Position - mRNA 191 -- 223@LB@Position - sRNA 21 -- 57@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 21 -- 27@LB@ |
| 186 |
0.008102 |
0.1535 |
b1768 |
pncA |
-9.42 |
0.149628 |
191 -- 212 |
21 -- 39 |
nicotinamidase/pyrazinamidase |
|
_____________190____________________213\n_____________|______________________|\n5'-UAA...AUUAA____A_U_________CC____GCCCU...CUA-3'\n______________GGAG_C_GUAAUGCCC__UCGC\n______________||||_|_|:||:||||__||||\n______________CCUC_G_CGUUGCGGG__AGCG\n3'-UUU...UUAUA________________U_____AACUG...ACG-5'\n_____________|______________________|\n_____________40_____________________20\n |
200 -- 206 |
26 -- 32 |
-26.7187 kcal/mol |
5.14291 kcal/mol |
12.1569 kcal/mol |
190 213@LB@ | |@LB@5'-UAA...AUUAA A U CC GCCCU...CUA-3'@LB@ GGAG C GUAAUGCCC UCGC@LB@ |||| | |:||:|||| ||||@LB@ CCUC G CGUUGCGGG AGCG@LB@3'-UUU...UUAUA U AACUG...ACG-5'@LB@ | |@LB@ 40 20@LB@@LB@@LB@Energy -9.42 kcal/mol@LB@Hybridization Energy -26.7187 kcal/mol@LB@Unfolding Energy - mRNA 5.14291 kcal/mol@LB@Unfolding Energy - sRNA 12.1569 kcal/mol@LB@@LB@Position - mRNA 191 -- 212@LB@Position - sRNA 21 -- 39@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 26 -- 32@LB@ |
| 192 |
0.008587 |
0.1548 |
b2366 |
dsdA |
-12.64 |
0.022913 |
191 -- 232 |
21 -- 49 |
D-serine dehydratase |
|
_____________190________________________________________233\n_____________|__________________________________________|\n5'-AUU...GCAAA______UAC______AAA___UAAAAUGAACU__________CCAGU...CCU-3'\n______________GAGACG___UAUGGA___CGC___________CGCUCAUCGC\n______________:||||:___||||||___|||___________|||:||||||\n______________UUCUGU___AUACCU___GCG___________GCGGGUAGCG\n3'-UUU...CUUCA______U________C_____UU___________________AACUG...ACG-5'\n_____________|__________________________________________|\n_____________50_________________________________________20\n |
226 -- 232 |
21 -- 27 |
-32.1247 kcal/mol |
5.89431 kcal/mol |
13.5917 kcal/mol |
190 233@LB@ | |@LB@5'-AUU...GCAAA UAC AAA UAAAAUGAACU CCAGU...CCU-3'@LB@ GAGACG UAUGGA CGC CGCUCAUCGC@LB@ :||||: |||||| ||| |||:||||||@LB@ UUCUGU AUACCU GCG GCGGGUAGCG@LB@3'-UUU...CUUCA U C UU AACUG...ACG-5'@LB@ | |@LB@ 50 20@LB@@LB@@LB@Energy -12.64 kcal/mol@LB@Hybridization Energy -32.1247 kcal/mol@LB@Unfolding Energy - mRNA 5.89431 kcal/mol@LB@Unfolding Energy - sRNA 13.5917 kcal/mol@LB@@LB@Position - mRNA 191 -- 232@LB@Position - sRNA 21 -- 49@LB@Position Seed - mRNA 226 -- 232@LB@Position Seed - sRNA 21 -- 27@LB@ |
