| 7 |
8.167e-06 |
0.003921 |
b1531 |
marA |
-12.70 |
0.022098 |
183 -- 204 |
40 -- 62 |
multiple antibiotic resistance transcriptional regulator |
|
_____________182_____________________205\n_____________|_______________________|\n5'-AAG...GUAAA______________U________CCAGA...AGC-3'\n______________CAAAAAA_GAGGUA_GACGAUGU\n______________|||||||_||:|||_|||:||:|\n______________GUUUUUU_CUUCAU_CUGUUAUA\n3'-UUU...AUUAA_______C______U________CCUCG...ACG-5'\n_____________|_______________________|\n_____________63______________________39\n |
198 -- 204 |
40 -- 46 |
-19.9636 kcal/mol |
3.18051 kcal/mol |
4.08673 kcal/mol |
182 205@LB@ | |@LB@5'-AAG...GUAAA U CCAGA...AGC-3'@LB@ CAAAAAA GAGGUA GACGAUGU@LB@ ||||||| ||:||| |||:||:|@LB@ GUUUUUU CUUCAU CUGUUAUA@LB@3'-UUU...AUUAA C U CCUCG...ACG-5'@LB@ | |@LB@ 63 39@LB@@LB@@LB@Energy -12.70 kcal/mol@LB@Hybridization Energy -19.9636 kcal/mol@LB@Unfolding Energy - mRNA 3.18051 kcal/mol@LB@Unfolding Energy - sRNA 4.08673 kcal/mol@LB@@LB@Position - mRNA 183 -- 204@LB@Position - sRNA 40 -- 62@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 52 |
0.0006076 |
0.04117 |
b1119 |
nagK |
-11.33 |
0.051615 |
175 -- 204 |
40 -- 71 |
N-acetyl-D-glucosamine kinase |
|
_____________174_______________________________205\n_____________|_________________________________|\n5'-UCA...UAAAG______CA______C______C___________AUUAC...GUG-3'\n______________GCAGUA__UUAAAA_AAGGAG____GGCAAUGU\n______________||||||__|:||||_|||||:____|:||||:|\n______________CGUCAU__AGUUUU_UUCCUU____CUGUUAUA\n3'-UUU...CGAUA______UA_____________CAUU________CCUCG...ACG-5'\n_____________|_________________________________|\n_____________72________________________________39\n |
197 -- 203 |
41 -- 47 |
-22.8361 kcal/mol |
5.88825 kcal/mol |
5.61718 kcal/mol |
174 205@LB@ | |@LB@5'-UCA...UAAAG CA C C AUUAC...GUG-3'@LB@ GCAGUA UUAAAA AAGGAG GGCAAUGU@LB@ |||||| |:|||| |||||: |:||||:|@LB@ CGUCAU AGUUUU UUCCUU CUGUUAUA@LB@3'-UUU...CGAUA UA CAUU CCUCG...ACG-5'@LB@ | |@LB@ 72 39@LB@@LB@@LB@Energy -11.33 kcal/mol@LB@Hybridization Energy -22.8361 kcal/mol@LB@Unfolding Energy - mRNA 5.88825 kcal/mol@LB@Unfolding Energy - sRNA 5.61718 kcal/mol@LB@@LB@Position - mRNA 175 -- 204@LB@Position - sRNA 40 -- 71@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 41 -- 47@LB@ |
| 119 |
0.004048 |
0.119 |
b3607 |
cysE |
-9.06 |
0.179616 |
191 -- 204 |
40 -- 54 |
serine acetyltransferase |
|
_____________190_____________205\n_____________|_______________|\n5'-CGG...CGUGU_______________CGUGU...CGA-3'\n______________GGAGUAAG_CAAUGU\n______________|:||||||_||||:|\n______________CUUCAUUC_GUUAUA\n3'-UUU...UUUUC________U______CCUCG...ACG-5'\n_____________|_______________|\n_____________55______________39\n |
192 -- 198 |
47 -- 53 |
-13.6491 kcal/mol |
2.75521 kcal/mol |
1.82942 kcal/mol |
190 205@LB@ | |@LB@5'-CGG...CGUGU CGUGU...CGA-3'@LB@ GGAGUAAG CAAUGU@LB@ |:|||||| ||||:|@LB@ CUUCAUUC GUUAUA@LB@3'-UUU...UUUUC U CCUCG...ACG-5'@LB@ | |@LB@ 55 39@LB@@LB@@LB@Energy -9.06 kcal/mol@LB@Hybridization Energy -13.6491 kcal/mol@LB@Unfolding Energy - mRNA 2.75521 kcal/mol@LB@Unfolding Energy - sRNA 1.82942 kcal/mol@LB@@LB@Position - mRNA 191 -- 204@LB@Position - sRNA 40 -- 54@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 47 -- 53@LB@ |
| 8 |
8.903e-06 |
0.003921 |
b1654 |
grxD |
-12.06 |
0.033180 |
187 -- 203 |
41 -- 57 |
glutaredoxin-4 |
|
_____________186_____________________204\n_____________|_______________________|\n5'-AAA...AGUUU_______C_______________ACCAC...CUG-3'\n______________GAGGAAG_AAGACAAU___GAGC\n______________:||||||_||||||||___||||\n______________UUCCUUC_UUCUGUUA___CUCG\n3'-UUU...GUUUU_______A________UAC____CGUUG...ACG-5'\n_____________|_______________________|\n_____________58______________________40\n |
196 -- 202 |
42 -- 48 |
-22.6133 kcal/mol |
5.89741 kcal/mol |
4.1846 kcal/mol |
186 204@LB@ | |@LB@5'-AAA...AGUUU C ACCAC...CUG-3'@LB@ GAGGAAG AAGACAAU GAGC@LB@ :|||||| |||||||| ||||@LB@ UUCCUUC UUCUGUUA CUCG@LB@3'-UUU...GUUUU A UAC CGUUG...ACG-5'@LB@ | |@LB@ 58 40@LB@@LB@@LB@Energy -12.06 kcal/mol@LB@Hybridization Energy -22.6133 kcal/mol@LB@Unfolding Energy - mRNA 5.89741 kcal/mol@LB@Unfolding Energy - sRNA 4.1846 kcal/mol@LB@@LB@Position - mRNA 187 -- 203@LB@Position - sRNA 41 -- 57@LB@Position Seed - mRNA 196 -- 202@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 28 |
0.0001471 |
0.01851 |
b0997 |
torA |
-9.78 |
0.123932 |
184 -- 203 |
41 -- 60 |
trimethylamine N-oxide (TMAO) reductase I catalytic subunit |
b3551 b1872 |
_____________183__________________204\n_____________|____________________|\n5'-UAC...GCGAU__________A__A______AACAA...CGC-3'\n______________AAGAAGGAAG_AA_AUAAUG\n______________||:|||||||_||_|:|||:\n______________UUUUUCCUUC_UU_UGUUAU\n3'-UUU...UAAGU__________A__C______ACCUC...ACG-5'\n_____________|____________________|\n_____________61___________________40\n |
187 -- 193 |
51 -- 57 |
-13.1224 kcal/mol |
1.37417 kcal/mol |
1.96633 kcal/mol |
183 204@LB@ | |@LB@5'-UAC...GCGAU A A AACAA...CGC-3'@LB@ AAGAAGGAAG AA AUAAUG@LB@ ||:||||||| || |:|||:@LB@ UUUUUCCUUC UU UGUUAU@LB@3'-UUU...UAAGU A C ACCUC...ACG-5'@LB@ | |@LB@ 61 40@LB@@LB@@LB@Energy -9.78 kcal/mol@LB@Hybridization Energy -13.1224 kcal/mol@LB@Unfolding Energy - mRNA 1.37417 kcal/mol@LB@Unfolding Energy - sRNA 1.96633 kcal/mol@LB@@LB@Position - mRNA 184 -- 203@LB@Position - sRNA 41 -- 60@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 29 |
0.0001601 |
0.01945 |
b3472 |
dcrB |
-12.60 |
0.023536 |
186 -- 203 |
41 -- 59 |
putative lipoprotein |
|
_____________185_________________204\n_____________|___________________|\n5'-UGG...UUAUC_____________U_____CGCAA...UCG-3'\n______________GAAAGGAAG_AAG_CAAUG\n______________:||||||||_|||_||||:\n______________UUUUCCUUC_UUC_GUUAU\n3'-UUU...AAGUU_________A___U_____ACCUC...ACG-5'\n_____________|___________________|\n_____________60__________________40\n |
188 -- 194 |
51 -- 57 |
-16.362 kcal/mol |
1.80431 kcal/mol |
1.95655 kcal/mol |
185 204@LB@ | |@LB@5'-UGG...UUAUC U CGCAA...UCG-3'@LB@ GAAAGGAAG AAG CAAUG@LB@ :|||||||| ||| ||||:@LB@ UUUUCCUUC UUC GUUAU@LB@3'-UUU...AAGUU A U ACCUC...ACG-5'@LB@ | |@LB@ 60 40@LB@@LB@@LB@Energy -12.60 kcal/mol@LB@Hybridization Energy -16.362 kcal/mol@LB@Unfolding Energy - mRNA 1.80431 kcal/mol@LB@Unfolding Energy - sRNA 1.95655 kcal/mol@LB@@LB@Position - mRNA 186 -- 203@LB@Position - sRNA 41 -- 59@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 57 |
0.0009345 |
0.05776 |
b3755 |
yieP |
-11.62 |
0.043293 |
183 -- 203 |
41 -- 61 |
putative transcriptional regulator |
|
_____________182____________________204\n_____________|______________________|\n5'-UUC...AAAAA___________A__________CCUUU...CCG-3'\n______________GAAAAAGGAAG_UAAG_UAAUG\n______________:||||||||||_||||_:|||:\n______________UUUUUUCCUUC_AUUC_GUUAU\n3'-UUU...UUAAG________________U_____ACCUC...ACG-5'\n_____________|______________________|\n_____________62_____________________40\n |
187 -- 193 |
51 -- 57 |
-16.3745 kcal/mol |
2.38082 kcal/mol |
2.36907 kcal/mol |
182 204@LB@ | |@LB@5'-UUC...AAAAA A CCUUU...CCG-3'@LB@ GAAAAAGGAAG UAAG UAAUG@LB@ :|||||||||| |||| :|||:@LB@ UUUUUUCCUUC AUUC GUUAU@LB@3'-UUU...UUAAG U ACCUC...ACG-5'@LB@ | |@LB@ 62 40@LB@@LB@@LB@Energy -11.62 kcal/mol@LB@Hybridization Energy -16.3745 kcal/mol@LB@Unfolding Energy - mRNA 2.38082 kcal/mol@LB@Unfolding Energy - sRNA 2.36907 kcal/mol@LB@@LB@Position - mRNA 183 -- 203@LB@Position - sRNA 41 -- 61@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 140 |
0.005308 |
0.1336 |
b0055 |
djlA |
-7.67 |
0.341620 |
49 -- 94 |
41 -- 89 |
membrane-anchored DnaK co-chaperone DNA-binding protein |
|
_____________48_________________________________________________95\n_____________|__________________________________________________|\n5'-GAC...GAAUA__________G______G___C_GC___G__U__C_______U_______CAAAU...UUG-3'\n______________GCG__UCAGU_GUGUUA_GCA_G__AUU_AA_GA___AGGUA_GAUAAUG\n______________:||__|||:|_|||:||_|||_|__|||_||_:|___|:|||_||:|||:\n______________UGC__AGUUA_CACGAU_CGU_C__UAA_UU_UU___UUCAU_CUGUUAU\n3'-UUU...CAGCA___UU_____A______A_____AU___G__U__UCC_____U_______ACCUC...ACG-5'\n_____________|__________________________________________________|\n_____________90_________________________________________________40\n |
88 -- 94 |
41 -- 47 |
-26.3807 kcal/mol |
12.8315 kcal/mol |
5.88014 kcal/mol |
48 95@LB@ | |@LB@5'-GAC...GAAUA G G C GC G U C U CAAAU...UUG-3'@LB@ GCG UCAGU GUGUUA GCA G AUU AA GA AGGUA GAUAAUG@LB@ :|| |||:| |||:|| ||| | ||| || :| |:||| ||:|||:@LB@ UGC AGUUA CACGAU CGU C UAA UU UU UUCAU CUGUUAU@LB@3'-UUU...CAGCA UU A A AU G U UCC U ACCUC...ACG-5'@LB@ | |@LB@ 90 40@LB@@LB@@LB@Energy -7.67 kcal/mol@LB@Hybridization Energy -26.3807 kcal/mol@LB@Unfolding Energy - mRNA 12.8315 kcal/mol@LB@Unfolding Energy - sRNA 5.88014 kcal/mol@LB@@LB@Position - mRNA 49 -- 94@LB@Position - sRNA 41 -- 89@LB@Position Seed - mRNA 88 -- 94@LB@Position Seed - sRNA 41 -- 47@LB@ |
| 180 |
0.007638 |
0.1495 |
b2007 |
yeeX |
-12.65 |
0.022752 |
43 -- 93 |
41 -- 87 |
UPF0265 family protein |
|
_____________42____________________________________________________94\n_____________|_____________________________________________________|\n5'-AUC...CUUCA______UCU______C___UUC_______C______UAAAG____U_______AAAAG...AAA-3'\n______________GAAUCA____UGCUG_UGC___GAUUCAG__AAGGA_____GGUA_GAUAGUG\n______________||||||____||||:_|||___:|||||:__|||||_____:|||_||:|:|:\n______________CUUAGU____ACGAU_ACG___UUAAGUU__UUCCU_____UCAU_CUGUUAU\n3'-UUU...GCAUG______UAAC_________UCA_______UU______________U_______ACCUC...ACG-5'\n_____________|_____________________________________________________|\n_____________88____________________________________________________40\n |
87 -- 93 |
41 -- 47 |
-32.6236 kcal/mol |
14.1148 kcal/mol |
5.85929 kcal/mol |
42 94@LB@ | |@LB@5'-AUC...CUUCA UCU C UUC C UAAAG U AAAAG...AAA-3'@LB@ GAAUCA UGCUG UGC GAUUCAG AAGGA GGUA GAUAGUG@LB@ |||||| ||||: ||| :|||||: ||||| :||| ||:|:|:@LB@ CUUAGU ACGAU ACG UUAAGUU UUCCU UCAU CUGUUAU@LB@3'-UUU...GCAUG UAAC UCA UU U ACCUC...ACG-5'@LB@ | |@LB@ 88 40@LB@@LB@@LB@Energy -12.65 kcal/mol@LB@Hybridization Energy -32.6236 kcal/mol@LB@Unfolding Energy - mRNA 14.1148 kcal/mol@LB@Unfolding Energy - sRNA 5.85929 kcal/mol@LB@@LB@Position - mRNA 43 -- 93@LB@Position - sRNA 41 -- 87@LB@Position Seed - mRNA 87 -- 93@LB@Position Seed - sRNA 41 -- 47@LB@ |
| 195 |
0.008697 |
0.1548 |
b0192 |
nlpE |
-11.98 |
0.034903 |
167 -- 206 |
41 -- 78 |
lipoprotein involved with copper homeostasis and adhesion |
|
_____________166________________________________________207\n_____________|__________________________________________|\n5'-UCA...GCAAA____GCA_____CGGG___AA__________U__________AAAAA...CGC-3'\n______________GUGC___GCGGU____AAU__AAAGAAGGAA___GGAUGGUG\n______________||||___||:||____|||__|||:||||||___:||:::|:\n______________CACG___CGUCA____UUA__UUUUUUCCUU___UCUGUUAU\n3'-UUU...GUUAA____AUA____________AG__________CAU________ACCUC...ACG-5'\n_____________|__________________________________________|\n_____________79_________________________________________40\n |
200 -- 206 |
41 -- 47 |
-26.7874 kcal/mol |
9.04038 kcal/mol |
5.77415 kcal/mol |
166 207@LB@ | |@LB@5'-UCA...GCAAA GCA CGGG AA U AAAAA...CGC-3'@LB@ GUGC GCGGU AAU AAAGAAGGAA GGAUGGUG@LB@ |||| ||:|| ||| |||:|||||| :||:::|:@LB@ CACG CGUCA UUA UUUUUUCCUU UCUGUUAU@LB@3'-UUU...GUUAA AUA AG CAU ACCUC...ACG-5'@LB@ | |@LB@ 79 40@LB@@LB@@LB@Energy -11.98 kcal/mol@LB@Hybridization Energy -26.7874 kcal/mol@LB@Unfolding Energy - mRNA 9.04038 kcal/mol@LB@Unfolding Energy - sRNA 5.77415 kcal/mol@LB@@LB@Position - mRNA 167 -- 206@LB@Position - sRNA 41 -- 78@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 41 -- 47@LB@ |
