150 |
0.005897 |
0.1368 |
b0887 |
cydD |
-10.72 |
0.073556 |
183 -- 190 |
1 -- 8 |
glutathione/cysteine ABC transporter export permease/ATPase |
|
_____________182______191\n_____________|________|\n5'-AUU...AUAAC________UAAGC...UGA-3'\n______________UCACCUGC\n______________||||||||\n______________AGUGGACG\n3'-UUU...ACGUA________-5'\n_____________|_______|\n_____________9_______1\n |
184 -- 190 |
1 -- 7 |
-15.001 kcal/mol |
1.91816 kcal/mol |
2.36381 kcal/mol |
182 191@LB@ | |@LB@5'-AUU...AUAAC UAAGC...UGA-3'@LB@ UCACCUGC@LB@ ||||||||@LB@ AGUGGACG@LB@3'-UUU...ACGUA -5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -10.72 kcal/mol@LB@Hybridization Energy -15.001 kcal/mol@LB@Unfolding Energy - mRNA 1.91816 kcal/mol@LB@Unfolding Energy - sRNA 2.36381 kcal/mol@LB@@LB@Position - mRNA 183 -- 190@LB@Position - sRNA 1 -- 8@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 1 -- 7@LB@ |
151 |
0.005924 |
0.1368 |
b3248 |
yhdE |
-13.35 |
0.014399 |
2 -- 41 |
1 -- 42 |
dTTP/UTP pyrophosphatase; m(5)UTP/m(5)CTP/pseudo-UTP pyrophosphatase |
|
_____________1___________________________________________42\n_____________|___________________________________________|\n__________5'-U_____C___A_______G_____C_________U______G__GGUGG...AGC-3'\n______________UAUGG_AGC__GGCGCU_GUCGU___AUGUUGC_UUCGCU_GU\n______________|||||_|||__::|||:_:|||:___|:|||||_|||:|:_|:\n______________AUACC_UCG__UUGCGG_UAGCG___UGCAACG_AAGUGG_CG\n3'-UUU...CUGUU_________CG______G_____AAC_______U______A__-5'\n_____________|__________________________________________|\n_____________43_________________________________________1\n |
25 -- 31 |
11 -- 17 |
-43.9582 kcal/mol |
15.3205 kcal/mol |
15.293 kcal/mol |
1 42@LB@ | |@LB@ 5'-U C A G C U G GGUGG...AGC-3'@LB@ UAUGG AGC GGCGCU GUCGU AUGUUGC UUCGCU GU@LB@ ||||| ||| ::|||: :|||: |:||||| |||:|: |:@LB@ AUACC UCG UUGCGG UAGCG UGCAACG AAGUGG CG@LB@3'-UUU...CUGUU CG G AAC U A -5'@LB@ | |@LB@ 43 1@LB@@LB@@LB@Energy -13.35 kcal/mol@LB@Hybridization Energy -43.9582 kcal/mol@LB@Unfolding Energy - mRNA 15.3205 kcal/mol@LB@Unfolding Energy - sRNA 15.293 kcal/mol@LB@@LB@Position - mRNA 2 -- 41@LB@Position - sRNA 1 -- 42@LB@Position Seed - mRNA 25 -- 31@LB@Position Seed - sRNA 11 -- 17@LB@ |
155 |
0.006038 |
0.137 |
b4374 |
yjjG |
-10.88 |
0.067155 |
203 -- 266 |
1 -- 54 |
dUMP phosphatase |
|
_____________202_____________________________________________________________________267\n_____________|_______________________________________________________________________|\n5'-CUG...AUAAU__________________UUUUCUUU______G__GAAA____GUUUACCUU____U___________G__CUGCA...CCU-3'\n______________GAAGUGGGAC____UGGA________GAUGCC_AU____CGCU_________UGAC____CAUUCACC_GC\n______________|||||::|||____||||________:|:|||_||____||||_________||||____||||||||_||\n______________CUUCAUUCUG____ACCU________UUGCGG_UA____GCGA_________ACUG____GUAAGUGG_CG\n3'-UUU...UUUUC__________UUAU____CGCG__________G_______________________CAAC________A__-5'\n_____________|______________________________________________________________________|\n_____________55_____________________________________________________________________1\n |
257 -- 263 |
4 -- 10 |
-41.6423 kcal/mol |
13.9643 kcal/mol |
16.8 kcal/mol |
202 267@LB@ | |@LB@5'-CUG...AUAAU UUUUCUUU G GAAA GUUUACCUU U G CUGCA...CCU-3'@LB@ GAAGUGGGAC UGGA GAUGCC AU CGCU UGAC CAUUCACC GC@LB@ |||||::||| |||| :|:||| || |||| |||| |||||||| ||@LB@ CUUCAUUCUG ACCU UUGCGG UA GCGA ACUG GUAAGUGG CG@LB@3'-UUU...UUUUC UUAU CGCG G CAAC A -5'@LB@ | |@LB@ 55 1@LB@@LB@@LB@Energy -10.88 kcal/mol@LB@Hybridization Energy -41.6423 kcal/mol@LB@Unfolding Energy - mRNA 13.9643 kcal/mol@LB@Unfolding Energy - sRNA 16.8 kcal/mol@LB@@LB@Position - mRNA 203 -- 266@LB@Position - sRNA 1 -- 54@LB@Position Seed - mRNA 257 -- 263@LB@Position Seed - sRNA 4 -- 10@LB@ |
158 |
0.006224 |
0.1377 |
b3553 |
ghrB |
-7.62 |
0.349627 |
252 -- 258 |
1 -- 7 |
glyoxylate/hydroxypyruvate reductase B |
|
_____________251_____259\n_____________|_______|\n5'-UCA...UGCAA_______AAGAG...CAC-3'\n______________CGCCUGC\n______________|:|||||\n______________GUGGACG\n3'-UUU...CGUAA_______-5'\n_____________|______|\n_____________8______1\n |
252 -- 258 |
1 -- 7 |
-12.8134 kcal/mol |
2.86334 kcal/mol |
2.34039 kcal/mol |
251 259@LB@ | |@LB@5'-UCA...UGCAA AAGAG...CAC-3'@LB@ CGCCUGC@LB@ |:|||||@LB@ GUGGACG@LB@3'-UUU...CGUAA -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -7.62 kcal/mol@LB@Hybridization Energy -12.8134 kcal/mol@LB@Unfolding Energy - mRNA 2.86334 kcal/mol@LB@Unfolding Energy - sRNA 2.34039 kcal/mol@LB@@LB@Position - mRNA 252 -- 258@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 252 -- 258@LB@Position Seed - sRNA 1 -- 7@LB@ |
162 |
0.006351 |
0.1377 |
b1869 |
yecN |
-10.06 |
0.106335 |
266 -- 273 |
1 -- 8 |
MAPEG family inner membrane protein |
|
_____________265______274\n_____________|________|\n5'-UCA...GUCGU________GAAUG...GCG-3'\n______________UCGCCUGC\n______________||:|||||\n______________AGUGGACG\n3'-UUU...ACGUA________-5'\n_____________|_______|\n_____________9_______1\n |
267 -- 273 |
1 -- 7 |
-14.5941 kcal/mol |
2.17055 kcal/mol |
2.36381 kcal/mol |
265 274@LB@ | |@LB@5'-UCA...GUCGU GAAUG...GCG-3'@LB@ UCGCCUGC@LB@ ||:|||||@LB@ AGUGGACG@LB@3'-UUU...ACGUA -5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -10.06 kcal/mol@LB@Hybridization Energy -14.5941 kcal/mol@LB@Unfolding Energy - mRNA 2.17055 kcal/mol@LB@Unfolding Energy - sRNA 2.36381 kcal/mol@LB@@LB@Position - mRNA 266 -- 273@LB@Position - sRNA 1 -- 8@LB@Position Seed - mRNA 267 -- 273@LB@Position Seed - sRNA 1 -- 7@LB@ |
163 |
0.006379 |
0.1377 |
b2210 |
mqo |
-11.85 |
0.037664 |
161 -- 168 |
1 -- 8 |
malate dehydrogenase FAD/NAD(P)-binding domain |
|
_____________160______169\n_____________|________|\n5'-GGC...AAAUC________AAUAA...AUG-3'\n______________UCACCUGC\n______________||||||||\n______________AGUGGACG\n3'-UUU...ACGUA________-5'\n_____________|_______|\n_____________9_______1\n |
162 -- 168 |
1 -- 7 |
-15.6271 kcal/mol |
1.41654 kcal/mol |
2.36381 kcal/mol |
160 169@LB@ | |@LB@5'-GGC...AAAUC AAUAA...AUG-3'@LB@ UCACCUGC@LB@ ||||||||@LB@ AGUGGACG@LB@3'-UUU...ACGUA -5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -11.85 kcal/mol@LB@Hybridization Energy -15.6271 kcal/mol@LB@Unfolding Energy - mRNA 1.41654 kcal/mol@LB@Unfolding Energy - sRNA 2.36381 kcal/mol@LB@@LB@Position - mRNA 161 -- 168@LB@Position - sRNA 1 -- 8@LB@Position Seed - mRNA 162 -- 168@LB@Position Seed - sRNA 1 -- 7@LB@ |
167 |
0.006646 |
0.1402 |
b0007 |
yaaJ |
-8.17 |
0.274480 |
254 -- 261 |
1 -- 8 |
putative transporter |
|
_____________253______262\n_____________|________|\n5'-CAA...AUGAU________UCUUC...GAU-3'\n______________UUACCUGC\n______________|:||||||\n______________AGUGGACG\n3'-UUU...ACGUA________-5'\n_____________|_______|\n_____________9_______1\n |
255 -- 261 |
1 -- 7 |
-12.8229 kcal/mol |
2.29081 kcal/mol |
2.36381 kcal/mol |
253 262@LB@ | |@LB@5'-CAA...AUGAU UCUUC...GAU-3'@LB@ UUACCUGC@LB@ |:||||||@LB@ AGUGGACG@LB@3'-UUU...ACGUA -5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -8.17 kcal/mol@LB@Hybridization Energy -12.8229 kcal/mol@LB@Unfolding Energy - mRNA 2.29081 kcal/mol@LB@Unfolding Energy - sRNA 2.36381 kcal/mol@LB@@LB@Position - mRNA 254 -- 261@LB@Position - sRNA 1 -- 8@LB@Position Seed - mRNA 255 -- 261@LB@Position Seed - sRNA 1 -- 7@LB@ |
172 |
0.007014 |
0.1437 |
b3430 |
glgC |
-13.14 |
0.016567 |
21 -- 80 |
1 -- 39 |
glucose-1-phosphate adenylyltransferase |
|
_____________20______________________________________________________________81\n_____________|_______________________________________________________________|\n5'-CAG...CUCUC___U___UUUUUGAUCGCAAUU______A_________G__AACAGAGAU_____________UGGGG...UGA-3'\n______________GGA_CGC_______________AACGCC___CGCUUGA_GU_________UGU_UUUACCUGC\n______________|||_|||_______________||||||___|||||||_||_________||:_||:||||||\n______________CCU_GCG_______________UUGCGG___GCGAACU_CA_________ACG_AAGUGGACG\n3'-UUU...UUAUA___C________________________GUA_______G______________U_________-5'\n_____________|______________________________________________________________|\n_____________40_____________________________________________________________1\n |
74 -- 80 |
1 -- 7 |
-41.5646 kcal/mol |
13.1395 kcal/mol |
15.291 kcal/mol |
20 81@LB@ | |@LB@5'-CAG...CUCUC U UUUUUGAUCGCAAUU A G AACAGAGAU UGGGG...UGA-3'@LB@ GGA CGC AACGCC CGCUUGA GU UGU UUUACCUGC@LB@ ||| ||| |||||| ||||||| || ||: ||:||||||@LB@ CCU GCG UUGCGG GCGAACU CA ACG AAGUGGACG@LB@3'-UUU...UUAUA C GUA G U -5'@LB@ | |@LB@ 40 1@LB@@LB@@LB@Energy -13.14 kcal/mol@LB@Hybridization Energy -41.5646 kcal/mol@LB@Unfolding Energy - mRNA 13.1395 kcal/mol@LB@Unfolding Energy - sRNA 15.291 kcal/mol@LB@@LB@Position - mRNA 21 -- 80@LB@Position - sRNA 1 -- 39@LB@Position Seed - mRNA 74 -- 80@LB@Position Seed - sRNA 1 -- 7@LB@ |
176 |
0.007245 |
0.145 |
b0397 |
sbcC |
-11.91 |
0.036282 |
117 -- 185 |
1 -- 55 |
exonuclease dsDNA ATP-dependent |
|
_____________116____________________________________________________________________186\n_____________|______________________________________________________________________|\n5'-GAA...GCACU_____AACU______AUCGC___A__________CA__AUCUUUUCACCAC__________A_____C__CGGAG...UUG-3'\n______________GGAAG____GGAUGA_____AGC_GCAACGUCUG__GC_____________GACGUUGCAU_C_CCU_GC\n______________|||||____:||::|_____|||_||||||:|::__||_____________||||||||||_|_|||_||\n______________CCUUC____UCUGUU_____UCG_CGUUGCGGGU__CG_____________CUGCAACGUA_G_GGA_CG\n3'-UUU...UUUUU_____AU________AUACC______________AG__AA_____________________A_U______-5'\n_____________|_____________________________________________________________________|\n_____________56____________________________________________________________________1\n |
170 -- 176 |
10 -- 16 |
-47.2501 kcal/mol |
18.5328 kcal/mol |
16.8092 kcal/mol |
116 186@LB@ | |@LB@5'-GAA...GCACU AACU AUCGC A CA AUCUUUUCACCAC A C CGGAG...UUG-3'@LB@ GGAAG GGAUGA AGC GCAACGUCUG GC GACGUUGCAU C CCU GC@LB@ ||||| :||::| ||| ||||||:|:: || |||||||||| | ||| ||@LB@ CCUUC UCUGUU UCG CGUUGCGGGU CG CUGCAACGUA G GGA CG@LB@3'-UUU...UUUUU AU AUACC AG AA A U -5'@LB@ | |@LB@ 56 1@LB@@LB@@LB@Energy -11.91 kcal/mol@LB@Hybridization Energy -47.2501 kcal/mol@LB@Unfolding Energy - mRNA 18.5328 kcal/mol@LB@Unfolding Energy - sRNA 16.8092 kcal/mol@LB@@LB@Position - mRNA 117 -- 185@LB@Position - sRNA 1 -- 55@LB@Position Seed - mRNA 170 -- 176@LB@Position Seed - sRNA 10 -- 16@LB@ |
2 |
4.208e-07 |
0.0007412 |
b2531 |
iscR |
-21.46 |
0.000012 |
188 -- 264 |
2 -- 56 |
isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress- and iron starvation-inducible; autorepressor |
|
_____________187___________________________________________________________________________265\n_____________|_____________________________________________________________________________|\n5'-AUG...UUUGA__U___________UG_GACUGACAUCUAAA______U_____GUGACCG__A______________C__A__U___AAGCG...AAC-3'\n______________GG_GAAGUAAGACA__A______________GGGCGC_AUGCC_______CA_UGCUUGACGUUGCG_UC_AC_CUG\n______________:|_|||||||||||__|______________|:||||_|:|||_______||_:||||||||||||:_||_||_|||\n______________UC_CUUCAUUCUGU__U______________CUCGCG_UGCGG_______GU_GCGAACUGCAACGU_AG_UG_GAC\n3'-UUU...UUUUU______________UA_AC__________________U______________A______________A_________G-5'\n_____________|_____________________________________________________________________________|\n_____________57____________________________________________________________________________1\n |
244 -- 250 |
14 -- 20 |
-58.8762 kcal/mol |
20.5805 kcal/mol |
16.8438 kcal/mol |
187 265@LB@ | |@LB@5'-AUG...UUUGA U UG GACUGACAUCUAAA U GUGACCG A C A U AAGCG...AAC-3'@LB@ GG GAAGUAAGACA A GGGCGC AUGCC CA UGCUUGACGUUGCG UC AC CUG@LB@ :| ||||||||||| | |:|||| |:||| || :||||||||||||: || || |||@LB@ UC CUUCAUUCUGU U CUCGCG UGCGG GU GCGAACUGCAACGU AG UG GAC@LB@3'-UUU...UUUUU UA AC U A A G-5'@LB@ | |@LB@ 57 1@LB@@LB@@LB@Energy -21.46 kcal/mol@LB@Hybridization Energy -58.8762 kcal/mol@LB@Unfolding Energy - mRNA 20.5805 kcal/mol@LB@Unfolding Energy - sRNA 16.8438 kcal/mol@LB@@LB@Position - mRNA 188 -- 264@LB@Position - sRNA 2 -- 56@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 14 -- 20@LB@ |