| 54 |
0.0007167 |
0.04676 |
b0147 |
ligT |
-15.11 |
0.004153 |
163 -- 244 |
1 -- 81 |
2'-5' RNA ligase |
|
_____________162_________________________________________________________________________________________245\n_____________|___________________________________________________________________________________________|\n5'-CCA...GCCAC_____A__AUC___________UAACC_______CCU__C____CU__AC_____________CUUU___AUC__________________AGAAA...CGG-3'\n______________AUUGU_GC___GCGGUAAUUCA_______GAGUG___CA_AUGU__GA__CGCAACGUCUGUU____GCU___GAC_______UUACCUGC\n______________|||||_||___||:||||||||_______:|||:___||_||:|__||__|||||||:|::|:____|||___|||_______|:||||||\n______________UAACA_CG___CGUCAUUAAGU_______UUCAU___GU_UAUA__CU__GCGUUGCGGGUAG____CGA___CUG_______AGUGGACG\n3'-UUU...UUAGU________AUA___________UUUUUCC_____UCU_______C___C_____________________A_____CAACGUA________-5'\n_____________|__________________________________________________________________________________________|\n_____________82_________________________________________________________________________________________1\n |
238 -- 244 |
1 -- 7 |
-55.1488 kcal/mol |
19.3452 kcal/mol |
20.694 kcal/mol |
162 245@LB@ | |@LB@5'-CCA...GCCAC A AUC UAACC CCU C CU AC CUUU AUC AGAAA...CGG-3'@LB@ AUUGU GC GCGGUAAUUCA GAGUG CA AUGU GA CGCAACGUCUGUU GCU GAC UUACCUGC@LB@ ||||| || ||:|||||||| :|||: || ||:| || |||||||:|::|: ||| ||| |:||||||@LB@ UAACA CG CGUCAUUAAGU UUCAU GU UAUA CU GCGUUGCGGGUAG CGA CUG AGUGGACG@LB@3'-UUU...UUAGU AUA UUUUUCC UCU C C A CAACGUA -5'@LB@ | |@LB@ 82 1@LB@@LB@@LB@Energy -15.11 kcal/mol@LB@Hybridization Energy -55.1488 kcal/mol@LB@Unfolding Energy - mRNA 19.3452 kcal/mol@LB@Unfolding Energy - sRNA 20.694 kcal/mol@LB@@LB@Position - mRNA 163 -- 244@LB@Position - sRNA 1 -- 81@LB@Position Seed - mRNA 238 -- 244@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 135 |
0.00505 |
0.1318 |
b0918 |
kdsB |
-10.75 |
0.072320 |
21 -- 54 |
1 -- 42 |
3-deoxy-manno-octulosonate cytidylyltransferase |
|
_____________20_________________________________________55\n_____________|__________________________________________|\n5'-CCC...GGAAC______U____U______________AAU_____________CCGGU...UUC-3'\n______________UAUGGA___CA_CGUC___UGCUUGA_____CAUU_GCCUGC\n______________||||||___||_||:|___:||||||_____||||_:|||||\n______________AUACCU___GU_GCGG___GCGAACU_____GUAA_UGGACG\n3'-UUU...CUGUU______CGC__U____GUA_______GCAAC____G______-5'\n_____________|_________________________________________|\n_____________43________________________________________1\n |
35 -- 41 |
17 -- 23 |
-30.6746 kcal/mol |
4.6323 kcal/mol |
15.293 kcal/mol |
20 55@LB@ | |@LB@5'-CCC...GGAAC U U AAU CCGGU...UUC-3'@LB@ UAUGGA CA CGUC UGCUUGA CAUU GCCUGC@LB@ |||||| || ||:| :|||||| |||| :|||||@LB@ AUACCU GU GCGG GCGAACU GUAA UGGACG@LB@3'-UUU...CUGUU CGC U GUA GCAAC G -5'@LB@ | |@LB@ 43 1@LB@@LB@@LB@Energy -10.75 kcal/mol@LB@Hybridization Energy -30.6746 kcal/mol@LB@Unfolding Energy - mRNA 4.6323 kcal/mol@LB@Unfolding Energy - sRNA 15.293 kcal/mol@LB@@LB@Position - mRNA 21 -- 54@LB@Position - sRNA 1 -- 42@LB@Position Seed - mRNA 35 -- 41@LB@Position Seed - sRNA 17 -- 23@LB@ |
| 121 |
0.004137 |
0.1205 |
b0353 |
mhpT |
-11.58 |
0.044392 |
170 -- 179 |
1 -- 10 |
3-hydroxyphenylpropionic transporter |
|
_____________169________180\n_____________|__________|\n5'-CGG...UCGCG__________ACUCG...CGG-3'\n______________AUUCACCUGC\n______________||||||||||\n______________UAAGUGGACG\n3'-UUU...CAACG__________-5'\n_____________|_________|\n_____________11________1\n |
173 -- 179 |
1 -- 7 |
-16.6324 kcal/mol |
2.26547 kcal/mol |
2.7891 kcal/mol |
169 180@LB@ | |@LB@5'-CGG...UCGCG ACUCG...CGG-3'@LB@ AUUCACCUGC@LB@ ||||||||||@LB@ UAAGUGGACG@LB@3'-UUU...CAACG -5'@LB@ | |@LB@ 11 1@LB@@LB@@LB@Energy -11.58 kcal/mol@LB@Hybridization Energy -16.6324 kcal/mol@LB@Unfolding Energy - mRNA 2.26547 kcal/mol@LB@Unfolding Energy - sRNA 2.7891 kcal/mol@LB@@LB@Position - mRNA 170 -- 179@LB@Position - sRNA 1 -- 10@LB@Position Seed - mRNA 173 -- 179@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 189 |
0.008291 |
0.1545 |
b3882 |
yihU |
-11.60 |
0.044017 |
173 -- 244 |
4 -- 78 |
3-sulpholactaldehyde (SLA) reductase NADH-dependent; gamma-hydroxybutyrate dehydrogenase NADH-dependent |
b0509 b3125 |
_____________172________________________________________________________________________________245\n_____________|__________________________________________________________________________________|\n5'-CAC...AAAAA___ACAUAACU________________U______________C___AAUC__________G__UAG___AAA__G_______AAUGG...ACG-3'\n______________GUG________GU_AUUCAGGAGAGGG__________UAUGG_AGC____GCGUUUAUCG_UU___GAC___UG_GUUCGCC\n______________|||________||_|||||::|:|||:__________|||||_|||____:||:::||||_||___|||___||_:|||:||\n______________CAC________CA_UAAGUUUUUUCCU__________AUACC_UCG____UGCGGGUAGC_AA___CUG___AC_UAAGUGG\n3'-UUU...GUUAA___GAUACGU___U_____________UCAUUCUGUU_________CGU___________G________CA___G_______ACG-5'\n_____________|__________________________________________________________________________________|\n_____________79_________________________________________________________________________________3\n |
238 -- 244 |
4 -- 10 |
-50.248 kcal/mol |
17.9839 kcal/mol |
20.6724 kcal/mol |
172 245@LB@ | |@LB@5'-CAC...AAAAA ACAUAACU U C AAUC G UAG AAA G AAUGG...ACG-3'@LB@ GUG GU AUUCAGGAGAGGG UAUGG AGC GCGUUUAUCG UU GAC UG GUUCGCC@LB@ ||| || |||||::|:|||: ||||| ||| :||:::|||| || ||| || :|||:||@LB@ CAC CA UAAGUUUUUUCCU AUACC UCG UGCGGGUAGC AA CUG AC UAAGUGG@LB@3'-UUU...GUUAA GAUACGU U UCAUUCUGUU CGU G CA G ACG-5'@LB@ | |@LB@ 79 3@LB@@LB@@LB@Energy -11.60 kcal/mol@LB@Hybridization Energy -50.248 kcal/mol@LB@Unfolding Energy - mRNA 17.9839 kcal/mol@LB@Unfolding Energy - sRNA 20.6724 kcal/mol@LB@@LB@Position - mRNA 173 -- 244@LB@Position - sRNA 4 -- 78@LB@Position Seed - mRNA 238 -- 244@LB@Position Seed - sRNA 4 -- 10@LB@ |
| 14 |
2.236e-05 |
0.005627 |
b3306 |
rpsH |
-12.22 |
0.029933 |
187 -- 206 |
35 -- 55 |
30S ribosomal subunit protein S8 |
|
_____________186____________________207\n_____________|______________________|\n5'-AGC...AUCAC______A_______________AUGCA...AAG-3'\n______________GGGAGU_AAGACAG_AU_GAGC\n______________||:|||_||||||:_||_||||\n______________CCUUCA_UUCUGUU_UA_CUCG\n3'-UUU...UUUUU______________A__C____CGUUG...ACG-5'\n_____________|______________________|\n_____________56_____________________34\n |
194 -- 200 |
43 -- 49 |
-20.142 kcal/mol |
3.78995 kcal/mol |
4.0932 kcal/mol |
186 207@LB@ | |@LB@5'-AGC...AUCAC A AUGCA...AAG-3'@LB@ GGGAGU AAGACAG AU GAGC@LB@ ||:||| ||||||: || ||||@LB@ CCUUCA UUCUGUU UA CUCG@LB@3'-UUU...UUUUU A C CGUUG...ACG-5'@LB@ | |@LB@ 56 34@LB@@LB@@LB@Energy -12.22 kcal/mol@LB@Hybridization Energy -20.142 kcal/mol@LB@Unfolding Energy - mRNA 3.78995 kcal/mol@LB@Unfolding Energy - sRNA 4.0932 kcal/mol@LB@@LB@Position - mRNA 187 -- 206@LB@Position - sRNA 35 -- 55@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 43 -- 49@LB@ |
| 190 |
0.008377 |
0.1548 |
b3167 |
rbfA |
-7.61 |
0.351010 |
14 -- 35 |
19 -- 38 |
30s ribosome binding factor |
|
_____________13_____________________36\n_____________|______________________|\n5'-AUU...UCAUC___A_C______A_________AAGGU...GCA-3'\n______________GAG_U_CAACGU_CCAUUGCUU\n______________|||_:_|||||:_||||:||||\n______________CUC_G_GUUGCG_GGUAGCGAA\n3'-UUU...UAUAC_____C________________CUGCA...ACG-5'\n_____________|______________________|\n_____________39_____________________18\n |
29 -- 35 |
19 -- 25 |
-22.6036 kcal/mol |
2.81921 kcal/mol |
12.1801 kcal/mol |
13 36@LB@ | |@LB@5'-AUU...UCAUC A C A AAGGU...GCA-3'@LB@ GAG U CAACGU CCAUUGCUU@LB@ ||| : |||||: ||||:||||@LB@ CUC G GUUGCG GGUAGCGAA@LB@3'-UUU...UAUAC C CUGCA...ACG-5'@LB@ | |@LB@ 39 18@LB@@LB@@LB@Energy -7.61 kcal/mol@LB@Hybridization Energy -22.6036 kcal/mol@LB@Unfolding Energy - mRNA 2.81921 kcal/mol@LB@Unfolding Energy - sRNA 12.1801 kcal/mol@LB@@LB@Position - mRNA 14 -- 35@LB@Position - sRNA 19 -- 38@LB@Position Seed - mRNA 29 -- 35@LB@Position Seed - sRNA 19 -- 25@LB@ |
| 22 |
6.552e-05 |
0.01049 |
b3829 |
metE |
-13.68 |
0.011485 |
203 -- 246 |
1 -- 47 |
5-methyltetrahydropteroyltriglutamate- homocysteine S-methyltransferase |
|
_____________202_____________________________________________247\n_____________|_______________________________________________|\n5'-GAG...AAAAU________U__AUC____A_______G__UCCCUC_____G______GUCGC...GUG-3'\n______________GACAAUAU_GA_____AC_CCC_UCG_UU______GCGUU_GCCUGC\n______________||||||||_||_____||_|||_|||_||______||:||_:|||||\n______________CUGUUAUA_CU_____UG_GGG_AGC_AA______CGUAA_UGGACG\n3'-UUU...UCAUU________C__CGCGU__C___U___G__CUGCAA_____G______-5'\n_____________|______________________________________________|\n_____________48_____________________________________________1\n |
204 -- 210 |
40 -- 46 |
-38.0501 kcal/mol |
7.59426 kcal/mol |
16.7767 kcal/mol |
202 247@LB@ | |@LB@5'-GAG...AAAAU U AUC A G UCCCUC G GUCGC...GUG-3'@LB@ GACAAUAU GA AC CCC UCG UU GCGUU GCCUGC@LB@ |||||||| || || ||| ||| || ||:|| :|||||@LB@ CUGUUAUA CU UG GGG AGC AA CGUAA UGGACG@LB@3'-UUU...UCAUU C CGCGU C U G CUGCAA G -5'@LB@ | |@LB@ 48 1@LB@@LB@@LB@Energy -13.68 kcal/mol@LB@Hybridization Energy -38.0501 kcal/mol@LB@Unfolding Energy - mRNA 7.59426 kcal/mol@LB@Unfolding Energy - sRNA 16.7767 kcal/mol@LB@@LB@Position - mRNA 203 -- 246@LB@Position - sRNA 1 -- 47@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 25 |
0.0001129 |
0.01591 |
b3304 |
rplR |
-13.93 |
0.009701 |
159 -- 205 |
37 -- 94 |
50S ribosomal subunit protein L18 |
|
_____________158___________________________________________________________206\n_____________|_____________________________________________________________|\n5'-AUC...ACGAA________UAC___AGAG______________________________GUA___C______UAAGA...GUC-3'\n______________GUCGUGCG___CAA____GCUA_____________AGAA_GAAGUAAG___ACA_UAUGGA\n______________|||||:||___|||____||||_____________|:||_||||||||___|||_||||||\n______________CAGCAUGC___GUU____CGAU_____________UUUU_CUUCAUUC___UGU_AUACCU\n3'-UUU...AGCCG________UUA___AACA____ACGUCAUUAAGUU____C______________U______CGCGU...ACG-5'\n_____________|_____________________________________________________________|\n_____________95____________________________________________________________36\n |
186 -- 192 |
47 -- 53 |
-32.9659 kcal/mol |
11.091 kcal/mol |
7.93697 kcal/mol |
158 206@LB@ | |@LB@5'-AUC...ACGAA UAC AGAG GUA C UAAGA...GUC-3'@LB@ GUCGUGCG CAA GCUA AGAA GAAGUAAG ACA UAUGGA@LB@ |||||:|| ||| |||| |:|| |||||||| ||| ||||||@LB@ CAGCAUGC GUU CGAU UUUU CUUCAUUC UGU AUACCU@LB@3'-UUU...AGCCG UUA AACA ACGUCAUUAAGUU C U CGCGU...ACG-5'@LB@ | |@LB@ 95 36@LB@@LB@@LB@Energy -13.93 kcal/mol@LB@Hybridization Energy -32.9659 kcal/mol@LB@Unfolding Energy - mRNA 11.091 kcal/mol@LB@Unfolding Energy - sRNA 7.93697 kcal/mol@LB@@LB@Position - mRNA 159 -- 205@LB@Position - sRNA 37 -- 94@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 47 -- 53@LB@ |
| 87 |
0.002406 |
0.09689 |
b3317 |
rplB |
-11.53 |
0.045926 |
6 -- 24 |
68 -- 86 |
50S ribosomal subunit protein L2 |
|
_____________5___________________25\n_____________|___________________|\n______5'-GCAGA______AGC__________AAACU...UGC-3'\n______________AAUCAA___UGCUGUGCAG\n______________||||||___||||:|||||\n______________UUAGUU___ACGAUACGUC\n3'-UUU...CAUGC______AAC__________AUUAA...ACG-5'\n_____________|___________________|\n_____________87__________________67\n |
18 -- 24 |
68 -- 74 |
-20.8348 kcal/mol |
5.62876 kcal/mol |
3.67996 kcal/mol |
5 25@LB@ | |@LB@ 5'-GCAGA AGC AAACU...UGC-3'@LB@ AAUCAA UGCUGUGCAG@LB@ |||||| ||||:|||||@LB@ UUAGUU ACGAUACGUC@LB@3'-UUU...CAUGC AAC AUUAA...ACG-5'@LB@ | |@LB@ 87 67@LB@@LB@@LB@Energy -11.53 kcal/mol@LB@Hybridization Energy -20.8348 kcal/mol@LB@Unfolding Energy - mRNA 5.62876 kcal/mol@LB@Unfolding Energy - sRNA 3.67996 kcal/mol@LB@@LB@Position - mRNA 6 -- 24@LB@Position - sRNA 68 -- 86@LB@Position Seed - mRNA 18 -- 24@LB@Position Seed - sRNA 68 -- 74@LB@ |
| 76 |
0.001842 |
0.08273 |
b1717 |
rpmI |
-9.61 |
0.135308 |
218 -- 256 |
48 -- 92 |
50S ribosomal subunit protein L35 |
|
_____________217___________________________________________257\n_____________|_____________________________________________|\n5'-GCG...AAGAC_____________GC_____A___C____________ACC_____AGGUG...UGA-3'\n______________CGUACG___CGGU__UGCUA_GCG____UUCAAAAAA___GGUAA\n______________||||||___|::|__|||||_||:____|||||||||___:||||\n______________GCAUGC___GUUA__ACGAU_CGU____AAGUUUUUU___UCAUU\n3'-UUU...CCGCA______UUA____AC_____A___CAUU_________CCU_____CUGUU...ACG-5'\n_____________|_____________________________________________|\n_____________93____________________________________________47\n |
242 -- 248 |
56 -- 62 |
-26.2826 kcal/mol |
11.8203 kcal/mol |
4.85131 kcal/mol |
217 257@LB@ | |@LB@5'-GCG...AAGAC GC A C ACC AGGUG...UGA-3'@LB@ CGUACG CGGU UGCUA GCG UUCAAAAAA GGUAA@LB@ |||||| |::| ||||| ||: ||||||||| :||||@LB@ GCAUGC GUUA ACGAU CGU AAGUUUUUU UCAUU@LB@3'-UUU...CCGCA UUA AC A CAUU CCU CUGUU...ACG-5'@LB@ | |@LB@ 93 47@LB@@LB@@LB@Energy -9.61 kcal/mol@LB@Hybridization Energy -26.2826 kcal/mol@LB@Unfolding Energy - mRNA 11.8203 kcal/mol@LB@Unfolding Energy - sRNA 4.85131 kcal/mol@LB@@LB@Position - mRNA 218 -- 256@LB@Position - sRNA 48 -- 92@LB@Position Seed - mRNA 242 -- 248@LB@Position Seed - sRNA 56 -- 62@LB@ |
