| 131 |
0.004841 |
0.1302 |
b3242 |
aaeX |
-9.57 |
0.138370 |
170 -- 176 |
1 -- 7 |
DUF1656 family putative inner membrane efflux pump associated protein |
|
_____________169_____177\n_____________|_______|\n5'-GCG...AAUAA_______UCUCU...GGG-3'\n______________CGCCUGC\n______________|:|||||\n______________GUGGACG\n3'-UUU...CGUAA_______-5'\n_____________|______|\n_____________8______1\n |
170 -- 176 |
1 -- 7 |
-12.9142 kcal/mol |
1.00865 kcal/mol |
2.34039 kcal/mol |
169 177@LB@ | |@LB@5'-GCG...AAUAA UCUCU...GGG-3'@LB@ CGCCUGC@LB@ |:|||||@LB@ GUGGACG@LB@3'-UUU...CGUAA -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -9.57 kcal/mol@LB@Hybridization Energy -12.9142 kcal/mol@LB@Unfolding Energy - mRNA 1.00865 kcal/mol@LB@Unfolding Energy - sRNA 2.34039 kcal/mol@LB@@LB@Position - mRNA 170 -- 176@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 170 -- 176@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 95 |
0.002866 |
0.1063 |
b1338 |
abgA |
-10.09 |
0.104797 |
206 -- 225 |
73 -- 94 |
p-aminobenzoyl-glutamate hydrolase A subunit |
|
_____________205____________________226\n_____________|______________________|\n5'-GAU...AUGGA___UU_________________AUUCG...UCC-3'\n______________GUC___UGAAUCAAUU_UGUUA\n______________|||___:|||||||||_||:||\n______________CAG___GCUUAGUUAA_ACGAU\n3'-UUU...AGCCG___CAU__________C_____ACGUC...ACG-5'\n_____________|______________________|\n_____________95_____________________72\n |
214 -- 220 |
79 -- 85 |
-14.4971 kcal/mol |
2.01447 kcal/mol |
2.39569 kcal/mol |
205 226@LB@ | |@LB@5'-GAU...AUGGA UU AUUCG...UCC-3'@LB@ GUC UGAAUCAAUU UGUUA@LB@ ||| :||||||||| ||:||@LB@ CAG GCUUAGUUAA ACGAU@LB@3'-UUU...AGCCG CAU C ACGUC...ACG-5'@LB@ | |@LB@ 95 72@LB@@LB@@LB@Energy -10.09 kcal/mol@LB@Hybridization Energy -14.4971 kcal/mol@LB@Unfolding Energy - mRNA 2.01447 kcal/mol@LB@Unfolding Energy - sRNA 2.39569 kcal/mol@LB@@LB@Position - mRNA 206 -- 225@LB@Position - sRNA 73 -- 94@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 79 -- 85@LB@ |
| 11 |
1.858e-05 |
0.005627 |
b4015 |
aceA |
-14.28 |
0.007567 |
72 -- 114 |
4 -- 39 |
isocitrate lyase |
|
_____________71___________________________________________115\n_____________|____________________________________________|\n5'-UUG...UCCCA_______UUUGAC______G____________GAA__GA_____ACUUC...UGA-3'\n______________GGGGCGU______GAUGCC_CA_CGCUUGAUG___CA__UCACC\n______________||:|||:______:|:|||_||_|||||||:|___||__|||||\n______________CCUCGCG______UUGCGG_GU_GCGAACUGC___GU__AGUGG\n3'-UUU...UUAUA______________________A_________AAC__A______ACG-5'\n_____________|____________________________________________|\n_____________40___________________________________________3\n |
96 -- 102 |
15 -- 21 |
-43.7402 kcal/mol |
14.1704 kcal/mol |
15.29 kcal/mol |
71 115@LB@ | |@LB@5'-UUG...UCCCA UUUGAC G GAA GA ACUUC...UGA-3'@LB@ GGGGCGU GAUGCC CA CGCUUGAUG CA UCACC@LB@ ||:|||: :|:||| || |||||||:| || |||||@LB@ CCUCGCG UUGCGG GU GCGAACUGC GU AGUGG@LB@3'-UUU...UUAUA A AAC A ACG-5'@LB@ | |@LB@ 40 3@LB@@LB@@LB@Energy -14.28 kcal/mol@LB@Hybridization Energy -43.7402 kcal/mol@LB@Unfolding Energy - mRNA 14.1704 kcal/mol@LB@Unfolding Energy - sRNA 15.29 kcal/mol@LB@@LB@Position - mRNA 72 -- 114@LB@Position - sRNA 4 -- 39@LB@Position Seed - mRNA 96 -- 102@LB@Position Seed - sRNA 15 -- 21@LB@ |
| 72 |
0.001523 |
0.07451 |
b2296 |
ackA |
-11.55 |
0.045253 |
141 -- 168 |
13 -- 36 |
acetate kinase A and propionate kinase 2 |
|
_____________140__________________________169\n_____________|____________________________|\n5'-AUU...AUCAU____U____U____G___CCC_______UUUUU...UAG-3'\n______________GCGC_ACGC_CUAU_GCU___UGACGUU\n______________||||_||||_|:||_|||___|||||||\n______________CGCG_UGCG_GGUA_CGA___ACUGCAA\n3'-UUU...UACCU____U_________G_____________CGUAA...ACG-5'\n_____________|____________________________|\n_____________37___________________________12\n |
162 -- 168 |
13 -- 19 |
-30.8127 kcal/mol |
7.01729 kcal/mol |
12.2493 kcal/mol |
140 169@LB@ | |@LB@5'-AUU...AUCAU U U G CCC UUUUU...UAG-3'@LB@ GCGC ACGC CUAU GCU UGACGUU@LB@ |||| |||| |:|| ||| |||||||@LB@ CGCG UGCG GGUA CGA ACUGCAA@LB@3'-UUU...UACCU U G CGUAA...ACG-5'@LB@ | |@LB@ 37 12@LB@@LB@@LB@Energy -11.55 kcal/mol@LB@Hybridization Energy -30.8127 kcal/mol@LB@Unfolding Energy - mRNA 7.01729 kcal/mol@LB@Unfolding Energy - sRNA 12.2493 kcal/mol@LB@@LB@Position - mRNA 141 -- 168@LB@Position - sRNA 13 -- 36@LB@Position Seed - mRNA 162 -- 168@LB@Position Seed - sRNA 13 -- 19@LB@ |
| 41 |
0.0003478 |
0.02948 |
b1478 |
adhP |
-14.79 |
0.005262 |
167 -- 196 |
51 -- 77 |
ethanol-active dehydrogenase/acetaldehyde-active reductase |
|
_____________166____________________________197\n_____________|______________________________|\n5'-GCA...UCACC__________AACA___UCC__________AACUA...GUU-3'\n______________UGCUAUGCAG____UCA___GAAAAGGAGG\n______________||||||||||____|||___:|||||||:|\n______________ACGAUACGUC____AGU___UUUUUCCUUC\n3'-UUU...UUAAC__________AUUA________________AUUCU...ACG-5'\n_____________|______________________________|\n_____________78_____________________________50\n |
190 -- 196 |
51 -- 57 |
-28.1635 kcal/mol |
8.82843 kcal/mol |
4.54711 kcal/mol |
166 197@LB@ | |@LB@5'-GCA...UCACC AACA UCC AACUA...GUU-3'@LB@ UGCUAUGCAG UCA GAAAAGGAGG@LB@ |||||||||| ||| :|||||||:|@LB@ ACGAUACGUC AGU UUUUUCCUUC@LB@3'-UUU...UUAAC AUUA AUUCU...ACG-5'@LB@ | |@LB@ 78 50@LB@@LB@@LB@Energy -14.79 kcal/mol@LB@Hybridization Energy -28.1635 kcal/mol@LB@Unfolding Energy - mRNA 8.82843 kcal/mol@LB@Unfolding Energy - sRNA 4.54711 kcal/mol@LB@@LB@Position - mRNA 167 -- 196@LB@Position - sRNA 51 -- 77@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 105 |
0.003386 |
0.1114 |
b0517 |
allD |
-12.14 |
0.031589 |
151 -- 204 |
43 -- 92 |
ureidoglycolate dehydrogenase |
b0801 |
_____________150______________________________________________________205\n_____________|________________________________________________________|\n5'-AAA...UUCCC_______________CA__C____UUCACACCG___UU__________AC______AAAUC...UGG-3'\n______________UGUAUG__UUAAUUG__GU_AUGC_________UCG__AAAAAGGAAG__AGAUGA\n______________:|||:|__|:|||||__|:_||||_________||:__||||||||||__|||::|\n______________GCAUGC__AGUUAAC__CG_UACG_________AGU__UUUUUCCUUC__UCUGUU\n3'-UUU...CCGCA______UU_______A___A____UCAUUA__________________AU______AUACC...ACG-5'\n_____________|________________________________________________________|\n_____________93_______________________________________________________42\n |
190 -- 196 |
51 -- 57 |
-28.1957 kcal/mol |
10.2009 kcal/mol |
5.86211 kcal/mol |
150 205@LB@ | |@LB@5'-AAA...UUCCC CA C UUCACACCG UU AC AAAUC...UGG-3'@LB@ UGUAUG UUAAUUG GU AUGC UCG AAAAAGGAAG AGAUGA@LB@ :|||:| |:||||| |: |||| ||: |||||||||| |||::|@LB@ GCAUGC AGUUAAC CG UACG AGU UUUUUCCUUC UCUGUU@LB@3'-UUU...CCGCA UU A A UCAUUA AU AUACC...ACG-5'@LB@ | |@LB@ 93 42@LB@@LB@@LB@Energy -12.14 kcal/mol@LB@Hybridization Energy -28.1957 kcal/mol@LB@Unfolding Energy - mRNA 10.2009 kcal/mol@LB@Unfolding Energy - sRNA 5.86211 kcal/mol@LB@@LB@Position - mRNA 151 -- 204@LB@Position - sRNA 43 -- 92@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 39 |
0.0003198 |
0.02889 |
b3960 |
argH |
-9.38 |
0.152930 |
179 -- 221 |
28 -- 64 |
argininosuccinate lyase |
|
_____________178__________________________________________222\n_____________|____________________________________________|\n5'-GCA...UGAAU_______U_____AACAG___UAU____CUU_____________UUUAC...AUA-3'\n______________UUCAAAA_AAGGA_____AGU___GGCA___UGGGGCG_GGCGU\n______________|||||||_|||||_____|||___|:||___|||:|||_::||:\n______________AAGUUUU_UUCCU_____UCA___CUGU___ACCUCGC_UUGCG\n3'-UUU...UCAUU_____________________UU_____UAU_______G_____GGUAG...ACG-5'\n_____________|____________________________________________|\n_____________65___________________________________________27\n |
210 -- 216 |
34 -- 40 |
-30.4591 kcal/mol |
8.02766 kcal/mol |
13.054 kcal/mol |
178 222@LB@ | |@LB@5'-GCA...UGAAU U AACAG UAU CUU UUUAC...AUA-3'@LB@ UUCAAAA AAGGA AGU GGCA UGGGGCG GGCGU@LB@ ||||||| ||||| ||| |:|| |||:||| ::||:@LB@ AAGUUUU UUCCU UCA CUGU ACCUCGC UUGCG@LB@3'-UUU...UCAUU UU UAU G GGUAG...ACG-5'@LB@ | |@LB@ 65 27@LB@@LB@@LB@Energy -9.38 kcal/mol@LB@Hybridization Energy -30.4591 kcal/mol@LB@Unfolding Energy - mRNA 8.02766 kcal/mol@LB@Unfolding Energy - sRNA 13.054 kcal/mol@LB@@LB@Position - mRNA 179 -- 221@LB@Position - sRNA 28 -- 64@LB@Position Seed - mRNA 210 -- 216@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 130 |
0.00465 |
0.126 |
b2916 |
argP |
-9.43 |
0.148863 |
238 -- 266 |
47 -- 73 |
transcriptional regulator for arginine transport and DNA replication genes; replication initiation inhibitor |
|
_____________237___________________________267\n_____________|_____________________________|\n5'-GGC...ACUGG__________ACG____C_____UU____CGCGC...CAG-3'\n______________AUGCGGUGAU___UGAA_GAGGA__UGAG\n______________||||:||:||___::||_:||||__|:||\n______________UACGUCAUUA___GUUU_UUCCU__AUUC\n3'-UUU...CACGA__________A______U_____UC____UGUUA...ACG-5'\n_____________|_____________________________|\n_____________74____________________________46\n |
240 -- 246 |
65 -- 71 |
-19.9139 kcal/mol |
5.97985 kcal/mol |
4.50495 kcal/mol |
237 267@LB@ | |@LB@5'-GGC...ACUGG ACG C UU CGCGC...CAG-3'@LB@ AUGCGGUGAU UGAA GAGGA UGAG@LB@ ||||:||:|| ::|| :|||| |:||@LB@ UACGUCAUUA GUUU UUCCU AUUC@LB@3'-UUU...CACGA A U UC UGUUA...ACG-5'@LB@ | |@LB@ 74 46@LB@@LB@@LB@Energy -9.43 kcal/mol@LB@Hybridization Energy -19.9139 kcal/mol@LB@Unfolding Energy - mRNA 5.97985 kcal/mol@LB@Unfolding Energy - sRNA 4.50495 kcal/mol@LB@@LB@Position - mRNA 238 -- 266@LB@Position - sRNA 47 -- 73@LB@Position Seed - mRNA 240 -- 246@LB@Position Seed - sRNA 65 -- 71@LB@ |
| 137 |
0.005185 |
0.1333 |
b2256 |
arnD |
-10.61 |
0.078275 |
62 -- 106 |
20 -- 56 |
undecaprenyl phosphate-alpha-L-ara4FN deformylase |
|
_____________61____________________________________________107\n_____________|_____________________________________________|\n5'-UUC...AUAUC____C____A___UC___AACC____AUCC__________C____GCCUG...AGG-3'\n______________AGGA_GUAG_GCA__GUA____GAGC____GCAAUGCCCA_CGCU\n______________||||_|||:_:||__:||____||||____||||:|||||_||||\n______________UCCU_CAUU_UGU__UAU____CUCG____CGUUGCGGGU_GCGA\n3'-UUU...UUUUU____U____C________AC____________________A____ACUGC...ACG-5'\n_____________|_____________________________________________|\n_____________57____________________________________________19\n |
95 -- 101 |
25 -- 31 |
-37.0072 kcal/mol |
12.6417 kcal/mol |
13.7538 kcal/mol |
61 107@LB@ | |@LB@5'-UUC...AUAUC C A UC AACC AUCC C GCCUG...AGG-3'@LB@ AGGA GUAG GCA GUA GAGC GCAAUGCCCA CGCU@LB@ |||| |||: :|| :|| |||| ||||:||||| ||||@LB@ UCCU CAUU UGU UAU CUCG CGUUGCGGGU GCGA@LB@3'-UUU...UUUUU U C AC A ACUGC...ACG-5'@LB@ | |@LB@ 57 19@LB@@LB@@LB@Energy -10.61 kcal/mol@LB@Hybridization Energy -37.0072 kcal/mol@LB@Unfolding Energy - mRNA 12.6417 kcal/mol@LB@Unfolding Energy - sRNA 13.7538 kcal/mol@LB@@LB@Position - mRNA 62 -- 106@LB@Position - sRNA 20 -- 56@LB@Position Seed - mRNA 95 -- 101@LB@Position Seed - sRNA 25 -- 31@LB@ |
| 164 |
0.006461 |
0.1377 |
b0864 |
artP |
-11.21 |
0.055481 |
74 -- 84 |
70 -- 80 |
arginine ABC transporter ATPase |
|
_____________73__________85\n_____________|___________|\n5'-AAA...UUAUU___________UUAUU...UAC-3'\n______________UUGUGCUAUGU\n______________||||||||||:\n______________AACACGAUACG\n3'-UUU...UAGUU___________UCAUU...ACG-5'\n_____________|___________|\n_____________81__________69\n |
78 -- 84 |
70 -- 76 |
-15.8897 kcal/mol |
2.86206 kcal/mol |
1.81863 kcal/mol |
73 85@LB@ | |@LB@5'-AAA...UUAUU UUAUU...UAC-3'@LB@ UUGUGCUAUGU@LB@ ||||||||||:@LB@ AACACGAUACG@LB@3'-UUU...UAGUU UCAUU...ACG-5'@LB@ | |@LB@ 81 69@LB@@LB@@LB@Energy -11.21 kcal/mol@LB@Hybridization Energy -15.8897 kcal/mol@LB@Unfolding Energy - mRNA 2.86206 kcal/mol@LB@Unfolding Energy - sRNA 1.81863 kcal/mol@LB@@LB@Position - mRNA 74 -- 84@LB@Position - sRNA 70 -- 80@LB@Position Seed - mRNA 78 -- 84@LB@Position Seed - sRNA 70 -- 76@LB@ |
