| 69 |
0.001222 |
0.06239 |
b0699 |
ybfA |
-13.19 |
0.016050 |
183 -- 205 |
37 -- 62 |
DUF2517 family protein |
|
_____________182________________________206\n_____________|__________________________|\n5'-AUG...AGAUA____________AAA___________ACUCU...GGA-3'\n______________CAAAAGGGGGAG______AGUAUGGA\n______________|||||::||:||______|:||||||\n______________GUUUUUUCCUUC______UUAUACCU\n3'-UUU...AUUAA____________AUUCUG________CGCGU...ACG-5'\n_____________|__________________________|\n_____________63_________________________36\n |
199 -- 205 |
37 -- 43 |
-21.7 kcal/mol |
3.27833 kcal/mol |
5.2343 kcal/mol |
182 206@LB@ | |@LB@5'-AUG...AGAUA AAA ACUCU...GGA-3'@LB@ CAAAAGGGGGAG AGUAUGGA@LB@ |||||::||:|| |:||||||@LB@ GUUUUUUCCUUC UUAUACCU@LB@3'-UUU...AUUAA AUUCUG CGCGU...ACG-5'@LB@ | |@LB@ 63 36@LB@@LB@@LB@Energy -13.19 kcal/mol@LB@Hybridization Energy -21.7 kcal/mol@LB@Unfolding Energy - mRNA 3.27833 kcal/mol@LB@Unfolding Energy - sRNA 5.2343 kcal/mol@LB@@LB@Position - mRNA 183 -- 205@LB@Position - sRNA 37 -- 62@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 78 |
0.001866 |
0.08273 |
b2952 |
yggT |
-14.70 |
0.005634 |
84 -- 104 |
37 -- 56 |
putative inner membrane protein; compensates for loss in K+ uptake |
|
_____________83____________________105\n_____________|_____________________|\n5'-AGG...UCUCU_____U__C____________AGCCG...ACA-3'\n______________GGGAA_GU_GGACGAUAUGGA\n______________:||||_||_:|||:|||||||\n______________UCCUU_CA_UCUGUUAUACCU\n3'-UUU...UUUUU________U____________CGCGU...ACG-5'\n_____________|_____________________|\n_____________57____________________36\n |
98 -- 104 |
37 -- 43 |
-24.1681 kcal/mol |
5.76987 kcal/mol |
3.6645 kcal/mol |
83 105@LB@ | |@LB@5'-AGG...UCUCU U C AGCCG...ACA-3'@LB@ GGGAA GU GGACGAUAUGGA@LB@ :|||| || :|||:|||||||@LB@ UCCUU CA UCUGUUAUACCU@LB@3'-UUU...UUUUU U CGCGU...ACG-5'@LB@ | |@LB@ 57 36@LB@@LB@@LB@Energy -14.70 kcal/mol@LB@Hybridization Energy -24.1681 kcal/mol@LB@Unfolding Energy - mRNA 5.76987 kcal/mol@LB@Unfolding Energy - sRNA 3.6645 kcal/mol@LB@@LB@Position - mRNA 84 -- 104@LB@Position - sRNA 37 -- 56@LB@Position Seed - mRNA 98 -- 104@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 116 |
0.003923 |
0.1189 |
b4515 |
cydX |
-11.57 |
0.044828 |
15 -- 31 |
37 -- 53 |
cytochrome d (bd-I) ubiquinol oxidase subunit X |
|
_____________14________________32\n_____________|_________________|\n5'-ACC...AACGC____CU___________AUGCA...GUC-3'\n______________AAGU__GACAAUGUGGG\n______________||||__||||||:|||:\n______________UUCA__CUGUUAUACCU\n3'-UUU...UUUCC____UU___________CGCGU...ACG-5'\n_____________|_________________|\n_____________54________________36\n |
25 -- 31 |
37 -- 43 |
-18.6761 kcal/mol |
3.6374 kcal/mol |
3.44536 kcal/mol |
14 32@LB@ | |@LB@5'-ACC...AACGC CU AUGCA...GUC-3'@LB@ AAGU GACAAUGUGGG@LB@ |||| ||||||:|||:@LB@ UUCA CUGUUAUACCU@LB@3'-UUU...UUUCC UU CGCGU...ACG-5'@LB@ | |@LB@ 54 36@LB@@LB@@LB@Energy -11.57 kcal/mol@LB@Hybridization Energy -18.6761 kcal/mol@LB@Unfolding Energy - mRNA 3.6374 kcal/mol@LB@Unfolding Energy - sRNA 3.44536 kcal/mol@LB@@LB@Position - mRNA 15 -- 31@LB@Position - sRNA 37 -- 53@LB@Position Seed - mRNA 25 -- 31@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 125 |
0.004538 |
0.1258 |
b0951 |
pqiB |
-12.90 |
0.019327 |
185 -- 205 |
37 -- 57 |
paraquat-inducible SoxRS-regulated MCE domain protein |
|
_____________184___________________206\n_____________|_____________________|\n5'-CUG...AGCAU______UCCU___________AUCUA...UUC-3'\n______________GAGGAG____GACAGUAUGGA\n______________:||||:____||||:||||||\n______________UUCCUU____CUGUUAUACCU\n3'-UUU...GUUUU______CAUU___________CGCGU...ACG-5'\n_____________|_____________________|\n_____________58____________________36\n |
199 -- 205 |
37 -- 43 |
-21.8788 kcal/mol |
5.24969 kcal/mol |
3.68958 kcal/mol |
184 206@LB@ | |@LB@5'-CUG...AGCAU UCCU AUCUA...UUC-3'@LB@ GAGGAG GACAGUAUGGA@LB@ :||||: ||||:||||||@LB@ UUCCUU CUGUUAUACCU@LB@3'-UUU...GUUUU CAUU CGCGU...ACG-5'@LB@ | |@LB@ 58 36@LB@@LB@@LB@Energy -12.90 kcal/mol@LB@Hybridization Energy -21.8788 kcal/mol@LB@Unfolding Energy - mRNA 5.24969 kcal/mol@LB@Unfolding Energy - sRNA 3.68958 kcal/mol@LB@@LB@Position - mRNA 185 -- 205@LB@Position - sRNA 37 -- 57@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 157 |
0.006139 |
0.1377 |
b2347 |
yfdC |
-9.29 |
0.160067 |
171 -- 205 |
37 -- 76 |
putative inner membrane protein |
|
_____________170________________________________________206\n_____________|__________________________________________|\n5'-GCA...CUUUA_____AC___C_______________________C_______CAACG...UCC-3'\n______________GCUAU__GUG_UAAUUCAAGA___GAAG__AGAC___AUGGA\n______________|||||__|::_||||||||:|___||||__||||___|||||\n______________CGAUA__CGU_AUUAAGUUUU___CUUC__UCUG___UACCU\n3'-UUU...UAACA__________C__________UUC____AU____UUA_____CGCGU...ACG-5'\n_____________|__________________________________________|\n_____________77_________________________________________36\n |
185 -- 191 |
58 -- 64 |
-24.5838 kcal/mol |
7.63937 kcal/mol |
7.64142 kcal/mol |
170 206@LB@ | |@LB@5'-GCA...CUUUA AC C C CAACG...UCC-3'@LB@ GCUAU GUG UAAUUCAAGA GAAG AGAC AUGGA@LB@ ||||| |:: ||||||||:| |||| |||| |||||@LB@ CGAUA CGU AUUAAGUUUU CUUC UCUG UACCU@LB@3'-UUU...UAACA C UUC AU UUA CGCGU...ACG-5'@LB@ | |@LB@ 77 36@LB@@LB@@LB@Energy -9.29 kcal/mol@LB@Hybridization Energy -24.5838 kcal/mol@LB@Unfolding Energy - mRNA 7.63937 kcal/mol@LB@Unfolding Energy - sRNA 7.64142 kcal/mol@LB@@LB@Position - mRNA 171 -- 205@LB@Position - sRNA 37 -- 76@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 58 -- 64@LB@ |
| 37 |
0.0003128 |
0.02889 |
b1107 |
nagZ |
-10.24 |
0.096497 |
189 -- 204 |
38 -- 57 |
beta N-acetyl-glucosaminidase |
|
_____________188__________________205\n_____________|____________________|\n5'-AUU...ACAAU____________________GUCCA...CGC-3'\n______________AAGGA___GAG_CAGUGUGG\n______________|||||___:||_||:|:|||\n______________UUCCU___UUC_GUUAUACC\n3'-UUU...GUUUU_____UCA___U________UCGCG...ACG-5'\n_____________|____________________|\n_____________58___________________37\n |
198 -- 204 |
38 -- 44 |
-15.5747 kcal/mol |
1.78066 kcal/mol |
3.52446 kcal/mol |
188 205@LB@ | |@LB@5'-AUU...ACAAU GUCCA...CGC-3'@LB@ AAGGA GAG CAGUGUGG@LB@ ||||| :|| ||:|:|||@LB@ UUCCU UUC GUUAUACC@LB@3'-UUU...GUUUU UCA U UCGCG...ACG-5'@LB@ | |@LB@ 58 37@LB@@LB@@LB@Energy -10.24 kcal/mol@LB@Hybridization Energy -15.5747 kcal/mol@LB@Unfolding Energy - mRNA 1.78066 kcal/mol@LB@Unfolding Energy - sRNA 3.52446 kcal/mol@LB@@LB@Position - mRNA 189 -- 204@LB@Position - sRNA 38 -- 57@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 196 |
0.008885 |
0.1548 |
b3052 |
hldE |
-13.36 |
0.014255 |
113 -- 160 |
38 -- 93 |
heptose 7-phosphate kinase and heptose 1-phosphate adenyltransferase |
|
_____________112______________________________________________________161\n_____________|________________________________________________________|\n5'-GCG...UGAAC_G________________________A___GGCUGGU______AAU__________UAUUA...CGC-3'\n______________U_GUGCGGG_CAA____GCUG_GCAG_AGU________GGAAG___GA_AGUAUGG\n______________|_||:||::_|||____|||:_||||_|:|________|||||___||_|:|||||\n______________A_CAUGCUU_GUU____CGAU_CGUC_UUA________CCUUC___CU_UUAUACC\n3'-UUU...GCCGC_G_______A___AACA____A____A___AGUUUUUU_____AUU__G_______UCGCG...ACG-5'\n_____________|________________________________________________________|\n_____________94_______________________________________________________37\n |
154 -- 160 |
38 -- 44 |
-32.7339 kcal/mol |
11.626 kcal/mol |
7.73696 kcal/mol |
112 161@LB@ | |@LB@5'-GCG...UGAAC G A GGCUGGU AAU UAUUA...CGC-3'@LB@ U GUGCGGG CAA GCUG GCAG AGU GGAAG GA AGUAUGG@LB@ | ||:||:: ||| |||: |||| |:| ||||| || |:|||||@LB@ A CAUGCUU GUU CGAU CGUC UUA CCUUC CU UUAUACC@LB@3'-UUU...GCCGC G A AACA A A AGUUUUUU AUU G UCGCG...ACG-5'@LB@ | |@LB@ 94 37@LB@@LB@@LB@Energy -13.36 kcal/mol@LB@Hybridization Energy -32.7339 kcal/mol@LB@Unfolding Energy - mRNA 11.626 kcal/mol@LB@Unfolding Energy - sRNA 7.73696 kcal/mol@LB@@LB@Position - mRNA 113 -- 160@LB@Position - sRNA 38 -- 93@LB@Position Seed - mRNA 154 -- 160@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 139 |
0.00529 |
0.1336 |
b3211 |
yhcC |
-9.14 |
0.172713 |
199 -- 227 |
39 -- 75 |
putative Fe-S oxidoreductase Radical SAM superfamily protein |
|
_____________198___________________________________228\n_____________|_____________________________________|\n5'-UGC...UCAGA_________UA________UU________U_______UUUGG...GCC-3'\n______________UUAUGCAGU____CAGAAA________AG_CAAUAUG\n______________:||||||||____||:|||________||_|||||||\n______________GAUACGUCA____GUUUUU________UC_GUUAUAC\n3'-UUU...AACAC_________UUAA______UCCUUCAU__U_______CUCGC...ACG-5'\n_____________|_____________________________________|\n_____________76____________________________________38\n |
221 -- 227 |
39 -- 45 |
-19.1659 kcal/mol |
3.3824 kcal/mol |
6.6377 kcal/mol |
198 228@LB@ | |@LB@5'-UGC...UCAGA UA UU U UUUGG...GCC-3'@LB@ UUAUGCAGU CAGAAA AG CAAUAUG@LB@ :|||||||| ||:||| || |||||||@LB@ GAUACGUCA GUUUUU UC GUUAUAC@LB@3'-UUU...AACAC UUAA UCCUUCAU U CUCGC...ACG-5'@LB@ | |@LB@ 76 38@LB@@LB@@LB@Energy -9.14 kcal/mol@LB@Hybridization Energy -19.1659 kcal/mol@LB@Unfolding Energy - mRNA 3.3824 kcal/mol@LB@Unfolding Energy - sRNA 6.6377 kcal/mol@LB@@LB@Position - mRNA 199 -- 227@LB@Position - sRNA 39 -- 75@LB@Position Seed - mRNA 221 -- 227@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 171 |
0.006844 |
0.141 |
b4537 |
yecJ |
-11.04 |
0.061373 |
25 -- 77 |
39 -- 91 |
DUF2766 family protein |
|
_____________24_______________________________________________________78\n_____________|________________________________________________________|\n5'-UGA...GAAAA_____U______AA_____U___A__AC_________CGUACCGCC__________UUCCG...CGC-3'\n______________GUAUG__UCAAU____CUA_UGC_AG__GUUCAAAGA_________AGGCAAUAUG\n______________|||:|__|||||____|||_|||_||__:||||||:|_________||:|||||||\n______________CAUGC__AGUUA____GAU_ACG_UC__UAAGUUUUU_________UCUGUUAUAC\n3'-UUU...CGCAG_____UU_____ACAC__________AU_________UCCUUCAU___________CUCGC...ACG-5'\n_____________|________________________________________________________|\n_____________92_______________________________________________________38\n |
71 -- 77 |
39 -- 45 |
-28.4449 kcal/mol |
10.572 kcal/mol |
6.83352 kcal/mol |
24 78@LB@ | |@LB@5'-UGA...GAAAA U AA U A AC CGUACCGCC UUCCG...CGC-3'@LB@ GUAUG UCAAU CUA UGC AG GUUCAAAGA AGGCAAUAUG@LB@ |||:| ||||| ||| ||| || :||||||:| ||:|||||||@LB@ CAUGC AGUUA GAU ACG UC UAAGUUUUU UCUGUUAUAC@LB@3'-UUU...CGCAG UU ACAC AU UCCUUCAU CUCGC...ACG-5'@LB@ | |@LB@ 92 38@LB@@LB@@LB@Energy -11.04 kcal/mol@LB@Hybridization Energy -28.4449 kcal/mol@LB@Unfolding Energy - mRNA 10.572 kcal/mol@LB@Unfolding Energy - sRNA 6.83352 kcal/mol@LB@@LB@Position - mRNA 25 -- 77@LB@Position - sRNA 39 -- 91@LB@Position Seed - mRNA 71 -- 77@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 198 |
0.008909 |
0.1548 |
b2205 |
napG |
-12.90 |
0.019402 |
153 -- 203 |
39 -- 89 |
ferredoxin-type protein |
|
_____________152_____________________________________________________204\n_____________|_______________________________________________________|\n5'-AAG...AAGAG_____CU____GAA____________CAAACU________U______C__U____UCCCG...GGU-3'\n______________ACGGA__UCAA___GUGC___GCGGU______GGAGAAGG__GUAAG_CA_UAUG\n______________|||:|__||||___||||___||:||______::|:||||__|||||_||_||||\n______________UGCUU__AGUU___CACG___CGUCA______UUUUUUCC__CAUUC_GU_AUAC\n3'-UUU...CAGCA___________AA_____AUA_____UUAAG_________UU_____U__U____CUCGC...ACG-5'\n_____________|_______________________________________________________|\n_____________90______________________________________________________38\n |
183 -- 189 |
54 -- 60 |
-32.365 kcal/mol |
12.639 kcal/mol |
6.82686 kcal/mol |
152 204@LB@ | |@LB@5'-AAG...AAGAG CU GAA CAAACU U C U UCCCG...GGU-3'@LB@ ACGGA UCAA GUGC GCGGU GGAGAAGG GUAAG CA UAUG@LB@ |||:| |||| |||| ||:|| ::|:|||| ||||| || ||||@LB@ UGCUU AGUU CACG CGUCA UUUUUUCC CAUUC GU AUAC@LB@3'-UUU...CAGCA AA AUA UUAAG UU U U CUCGC...ACG-5'@LB@ | |@LB@ 90 38@LB@@LB@@LB@Energy -12.90 kcal/mol@LB@Hybridization Energy -32.365 kcal/mol@LB@Unfolding Energy - mRNA 12.639 kcal/mol@LB@Unfolding Energy - sRNA 6.82686 kcal/mol@LB@@LB@Position - mRNA 153 -- 203@LB@Position - sRNA 39 -- 89@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 54 -- 60@LB@ |
