165 |
0.006479 |
0.1377 |
b3132 |
kbaZ |
-14.08 |
0.008730 |
160 -- 208 |
44 -- 89 |
tagatose 6-phosphate aldolase 1 kbaZ subunit |
b2095 |
_____________159__________________________________________________209\n_____________|____________________________________________________|\n5'-CGC...ACAAA_____A_____AA_____C________CUGAACU_________A____A___UCUGA...CAA-3'\n______________ACGAA__GAUU____UAU_GCAGUAAU_______GGAGAGGAA_GUGA_ACA\n______________|||||__:|||____|||_||||||||_______::|:|||||_||:|_|||\n______________UGCUU__UUAA____AUA_CGUCAUUA_______UUUUUCCUU_CAUU_UGU\n3'-UUU...CAGCA_____AG____CACG____________AGU__________________C___UAUAC...ACG-5'\n_____________|____________________________________________________|\n_____________90___________________________________________________43\n |
193 -- 199 |
52 -- 58 |
-26.7556 kcal/mol |
6.95106 kcal/mol |
5.72676 kcal/mol |
159 209@LB@ | |@LB@5'-CGC...ACAAA A AA C CUGAACU A A UCUGA...CAA-3'@LB@ ACGAA GAUU UAU GCAGUAAU GGAGAGGAA GUGA ACA@LB@ ||||| :||| ||| |||||||| ::|:||||| ||:| |||@LB@ UGCUU UUAA AUA CGUCAUUA UUUUUCCUU CAUU UGU@LB@3'-UUU...CAGCA AG CACG AGU C UAUAC...ACG-5'@LB@ | |@LB@ 90 43@LB@@LB@@LB@Energy -14.08 kcal/mol@LB@Hybridization Energy -26.7556 kcal/mol@LB@Unfolding Energy - mRNA 6.95106 kcal/mol@LB@Unfolding Energy - sRNA 5.72676 kcal/mol@LB@@LB@Position - mRNA 160 -- 208@LB@Position - sRNA 44 -- 89@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 52 -- 58@LB@ |
27 |
0.0001238 |
0.01616 |
b0081 |
mraZ |
-12.77 |
0.021128 |
157 -- 196 |
45 -- 91 |
RsmH methytransferase inhibitor |
|
_____________156_____________________________________________197\n_____________|_______________________________________________|\n5'-GAU...UUUCA___G____________GG_____A____GG___U_____________UGGCA...AAA-3'\n______________GUG_GA___AAUUGUG____GCA__AGU__GAA_AAGG_GGUGAGGC\n______________||:_||___|||||||____|||__|:|__:||_||||_:||:||:|\n______________CAU_CU___UUAACAC____CGU__UUA__UUU_UUCC_UCAUUCUG\n3'-UUU...CGCAG___G__UAG_______GAUA___CA___AG___U____U________UUAUA...ACG-5'\n_____________|_______________________________________________|\n_____________92______________________________________________44\n |
190 -- 196 |
45 -- 51 |
-27.6686 kcal/mol |
9.1766 kcal/mol |
5.72765 kcal/mol |
156 197@LB@ | |@LB@5'-GAU...UUUCA G GG A GG U UGGCA...AAA-3'@LB@ GUG GA AAUUGUG GCA AGU GAA AAGG GGUGAGGC@LB@ ||: || ||||||| ||| |:| :|| |||| :||:||:|@LB@ CAU CU UUAACAC CGU UUA UUU UUCC UCAUUCUG@LB@3'-UUU...CGCAG G UAG GAUA CA AG U U UUAUA...ACG-5'@LB@ | |@LB@ 92 44@LB@@LB@@LB@Energy -12.77 kcal/mol@LB@Hybridization Energy -27.6686 kcal/mol@LB@Unfolding Energy - mRNA 9.1766 kcal/mol@LB@Unfolding Energy - sRNA 5.72765 kcal/mol@LB@@LB@Position - mRNA 157 -- 196@LB@Position - sRNA 45 -- 91@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 45 -- 51@LB@ |
38 |
0.0003163 |
0.02889 |
b4315 |
fimI |
-9.52 |
0.141947 |
182 -- 216 |
45 -- 80 |
fimbrial protein involved in type 1 pilus biosynthesis |
|
_____________181___________________________________217\n_____________|_____________________________________|\n5'-UGC...CACCC______GAUAAAAAUAACGAU________________UAUUU...AAU-3'\n______________UUGUGC_______________GAAAAGGAAG__AGAU\n______________||||||_______________:|||||||||__|||:\n______________AACACG_______________UUUUUCCUUC__UCUG\n3'-UUU...UAGUU______AUACGUCAUUAAGU___________AU____UUAUA...ACG-5'\n_____________|_____________________________________|\n_____________81____________________________________44\n |
206 -- 212 |
51 -- 57 |
-20.4045 kcal/mol |
5.26447 kcal/mol |
5.61905 kcal/mol |
181 217@LB@ | |@LB@5'-UGC...CACCC GAUAAAAAUAACGAU UAUUU...AAU-3'@LB@ UUGUGC GAAAAGGAAG AGAU@LB@ |||||| :||||||||| |||:@LB@ AACACG UUUUUCCUUC UCUG@LB@3'-UUU...UAGUU AUACGUCAUUAAGU AU UUAUA...ACG-5'@LB@ | |@LB@ 81 44@LB@@LB@@LB@Energy -9.52 kcal/mol@LB@Hybridization Energy -20.4045 kcal/mol@LB@Unfolding Energy - mRNA 5.26447 kcal/mol@LB@Unfolding Energy - sRNA 5.61905 kcal/mol@LB@@LB@Position - mRNA 182 -- 216@LB@Position - sRNA 45 -- 80@LB@Position Seed - mRNA 206 -- 212@LB@Position Seed - sRNA 51 -- 57@LB@ |
56 |
0.0007477 |
0.04704 |
b2777 |
queE |
-11.99 |
0.034574 |
197 -- 232 |
45 -- 77 |
7-carboxy-7-deazaguanine synthase; queosine biosynthesis |
|
_____________196___________________________________233\n_____________|_____________________________________|\n5'-AAU...GAGAA____________CC____UU__C_A__U__UCC____CCUGC...UUG-3'\n______________UGCUAUGCAGUA___CGA__AA_G_GA_GU___AGAC\n______________||||||||||||___|:|__||_|_||_||___||||\n______________ACGAUACGUCAU___GUU__UU_C_CU_CA___UCUG\n3'-UUU...UUAAC____________UAA___UU_______U__U______UUAUA...ACG-5'\n_____________|_____________________________________|\n_____________78____________________________________44\n |
202 -- 208 |
66 -- 72 |
-23.7263 kcal/mol |
6.13303 kcal/mol |
5.60521 kcal/mol |
196 233@LB@ | |@LB@5'-AAU...GAGAA CC UU C A U UCC CCUGC...UUG-3'@LB@ UGCUAUGCAGUA CGA AA G GA GU AGAC@LB@ |||||||||||| |:| || | || || ||||@LB@ ACGAUACGUCAU GUU UU C CU CA UCUG@LB@3'-UUU...UUAAC UAA UU U U UUAUA...ACG-5'@LB@ | |@LB@ 78 44@LB@@LB@@LB@Energy -11.99 kcal/mol@LB@Hybridization Energy -23.7263 kcal/mol@LB@Unfolding Energy - mRNA 6.13303 kcal/mol@LB@Unfolding Energy - sRNA 5.60521 kcal/mol@LB@@LB@Position - mRNA 197 -- 232@LB@Position - sRNA 45 -- 77@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 66 -- 72@LB@ |
122 |
0.004264 |
0.1231 |
b2914 |
rpiA |
-10.11 |
0.103884 |
190 -- 234 |
45 -- 89 |
ribose 5-phosphate isomerase constitutive |
|
_____________189______________________________________________235\n_____________|________________________________________________|\n5'-GAA...CACAG_____A____CA__AC______GAUGA___G_______C_________GGGCG...CAC-3'\n______________GCGAA_CGAU__UG____GCAG_____AUU_AAAAAAG__AGUAGGAU\n______________:||||_|:||__||____||||_____|||_|||||||__||||:||:\n______________UGCUU_GUUA__AC____CGUC_____UAA_UUUUUUC__UCAUUCUG\n3'-UUU...CAGCA_____A____AC__GAUA____AU______G_______CU________UUAUA...ACG-5'\n_____________|________________________________________________|\n_____________90_______________________________________________44\n |
228 -- 234 |
45 -- 51 |
-27.3521 kcal/mol |
11.527 kcal/mol |
5.72096 kcal/mol |
189 235@LB@ | |@LB@5'-GAA...CACAG A CA AC GAUGA G C GGGCG...CAC-3'@LB@ GCGAA CGAU UG GCAG AUU AAAAAAG AGUAGGAU@LB@ :|||| |:|| || |||| ||| ||||||| ||||:||:@LB@ UGCUU GUUA AC CGUC UAA UUUUUUC UCAUUCUG@LB@3'-UUU...CAGCA A AC GAUA AU G CU UUAUA...ACG-5'@LB@ | |@LB@ 90 44@LB@@LB@@LB@Energy -10.11 kcal/mol@LB@Hybridization Energy -27.3521 kcal/mol@LB@Unfolding Energy - mRNA 11.527 kcal/mol@LB@Unfolding Energy - sRNA 5.72096 kcal/mol@LB@@LB@Position - mRNA 190 -- 234@LB@Position - sRNA 45 -- 89@LB@Position Seed - mRNA 228 -- 234@LB@Position Seed - sRNA 45 -- 51@LB@ |
126 |
0.004539 |
0.1258 |
b0546 |
ybcM |
-11.00 |
0.062763 |
188 -- 220 |
45 -- 91 |
DLP12 prophage; putative DNA-binding transcriptional regulator |
b1499 b0564 b3515 b4116 b0566 b3516 |
_____________187_____________________________________________221\n_____________|_______________________________________________|\n5'-GCU...AUAAA___G__UGA__GUA_________A_______________________UAACU...GUC-3'\n______________GUA_GG___GA___UGCUG_GCA______________GAGGUAAGAC\n______________|||_|:___:|___||||:_|||______________||:|||||||\n______________CAU_CU___UU___ACGAU_CGU______________CUUCAUUCUG\n3'-UUU...CGCAG___G__UAG__AAC_____A___CAUUAAGUUUUUUC__________UUAUA...ACG-5'\n_____________|_______________________________________________|\n_____________92______________________________________________44\n |
214 -- 220 |
45 -- 51 |
-23.4531 kcal/mol |
6.72952 kcal/mol |
5.72765 kcal/mol |
187 221@LB@ | |@LB@5'-GCU...AUAAA G UGA GUA A UAACU...GUC-3'@LB@ GUA GG GA UGCUG GCA GAGGUAAGAC@LB@ ||| |: :| ||||: ||| ||:|||||||@LB@ CAU CU UU ACGAU CGU CUUCAUUCUG@LB@3'-UUU...CGCAG G UAG AAC A CAUUAAGUUUUUUC UUAUA...ACG-5'@LB@ | |@LB@ 92 44@LB@@LB@@LB@Energy -11.00 kcal/mol@LB@Hybridization Energy -23.4531 kcal/mol@LB@Unfolding Energy - mRNA 6.72952 kcal/mol@LB@Unfolding Energy - sRNA 5.72765 kcal/mol@LB@@LB@Position - mRNA 188 -- 220@LB@Position - sRNA 45 -- 91@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 45 -- 51@LB@ |
55 |
0.0007336 |
0.04699 |
b0585 |
fes |
-14.13 |
0.008457 |
197 -- 228 |
46 -- 77 |
enterobactin/ferrienterobactin esterase |
|
_____________196________________________________229\n_____________|__________________________________|\n5'-CAU...GGUUA__G____A___CG_________U___________GCUGG...GGU-3'\n______________UG_UGUG_CGG____UUAAAAG_AGGAAGUGAGA\n______________||_|:||_|:|____|:||||:_|||||||:|||\n______________AC_AUAC_GUC____AGUUUUU_UCCUUCAUUCU\n3'-UUU...UUAAC__G________AUUA___________________GUUAU...ACG-5'\n_____________|__________________________________|\n_____________78_________________________________45\n |
222 -- 228 |
46 -- 52 |
-26.4508 kcal/mol |
7.03406 kcal/mol |
5.29333 kcal/mol |
196 229@LB@ | |@LB@5'-CAU...GGUUA G A CG U GCUGG...GGU-3'@LB@ UG UGUG CGG UUAAAAG AGGAAGUGAGA@LB@ || |:|| |:| |:||||: |||||||:|||@LB@ AC AUAC GUC AGUUUUU UCCUUCAUUCU@LB@3'-UUU...UUAAC G AUUA GUUAU...ACG-5'@LB@ | |@LB@ 78 45@LB@@LB@@LB@Energy -14.13 kcal/mol@LB@Hybridization Energy -26.4508 kcal/mol@LB@Unfolding Energy - mRNA 7.03406 kcal/mol@LB@Unfolding Energy - sRNA 5.29333 kcal/mol@LB@@LB@Position - mRNA 197 -- 228@LB@Position - sRNA 46 -- 77@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 46 -- 52@LB@ |
118 |
0.004043 |
0.119 |
b1636 |
pdxY |
-15.07 |
0.004282 |
119 -- 169 |
46 -- 90 |
pyridoxamine kinase |
|
_____________118___________________________________________________170\n_____________|_____________________________________________________|\n5'-UAU...AGAAU___U____U_________GGAAAUA_____U___G_G________________AAUCA...UCU-3'\n______________UAC__GUC_GAUU_UGCU_______AUGCA_UAA_U_GAAAGGGGGAGUGAGA\n______________|||__:||_:|||_||||_______|||||_|||_|_:|||::||:|||:|||\n______________AUG__UAG_UUAA_ACGA_______UACGU_AUU_A_UUUUUUCCUUCAUUCU\n3'-UUU...GCAGC___CU________C________________C___A_G________________GUUAU...ACG-5'\n_____________|_____________________________________________________|\n_____________91____________________________________________________45\n |
163 -- 169 |
46 -- 52 |
-32.4349 kcal/mol |
11.9314 kcal/mol |
5.43414 kcal/mol |
118 170@LB@ | |@LB@5'-UAU...AGAAU U U GGAAAUA U G G AAUCA...UCU-3'@LB@ UAC GUC GAUU UGCU AUGCA UAA U GAAAGGGGGAGUGAGA@LB@ ||| :|| :||| |||| ||||| ||| | :|||::||:|||:|||@LB@ AUG UAG UUAA ACGA UACGU AUU A UUUUUUCCUUCAUUCU@LB@3'-UUU...GCAGC CU C C A G GUUAU...ACG-5'@LB@ | |@LB@ 91 45@LB@@LB@@LB@Energy -15.07 kcal/mol@LB@Hybridization Energy -32.4349 kcal/mol@LB@Unfolding Energy - mRNA 11.9314 kcal/mol@LB@Unfolding Energy - sRNA 5.43414 kcal/mol@LB@@LB@Position - mRNA 119 -- 169@LB@Position - sRNA 46 -- 90@LB@Position Seed - mRNA 163 -- 169@LB@Position Seed - sRNA 46 -- 52@LB@ |
160 |
0.006309 |
0.1377 |
b2602 |
yfiL |
-11.97 |
0.035037 |
175 -- 199 |
46 -- 76 |
lipoprotein |
|
_____________174_____________________________200\n_____________|_______________________________|\n5'-CCU...AAUCC__________________________A____AAUGA...GGU-3'\n______________GCUAUGC_____UUUGAAAAAGGA_G_AAGA\n______________|||||||_____||::||||||||_|_||||\n______________CGAUACG_____AAGUUUUUUCCU_C_UUCU\n3'-UUU...UAACA_______UCAUU____________U_A____GUUAU...ACG-5'\n_____________|_______________________________|\n_____________77______________________________45\n |
187 -- 193 |
53 -- 59 |
-23.3315 kcal/mol |
6.08708 kcal/mol |
5.27798 kcal/mol |
174 200@LB@ | |@LB@5'-CCU...AAUCC A AAUGA...GGU-3'@LB@ GCUAUGC UUUGAAAAAGGA G AAGA@LB@ ||||||| ||::|||||||| | ||||@LB@ CGAUACG AAGUUUUUUCCU C UUCU@LB@3'-UUU...UAACA UCAUU U A GUUAU...ACG-5'@LB@ | |@LB@ 77 45@LB@@LB@@LB@Energy -11.97 kcal/mol@LB@Hybridization Energy -23.3315 kcal/mol@LB@Unfolding Energy - mRNA 6.08708 kcal/mol@LB@Unfolding Energy - sRNA 5.27798 kcal/mol@LB@@LB@Position - mRNA 175 -- 199@LB@Position - sRNA 46 -- 76@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 53 -- 59@LB@ |
161 |
0.006314 |
0.1377 |
b4099 |
phnI |
-7.36 |
0.387929 |
194 -- 228 |
46 -- 79 |
ribophosphonate triphosphate synthase complex putative catalytic subunit |
|
_____________193__________________________________229\n_____________|____________________________________|\n5'-AGC...GGAGG______G_____C__UGC___U_________C____AGGCG...GCG-3'\n______________UGUGCU_AUGUA_GU____CG_GAAAGGGGG_GAGA\n______________||||||_|||:|_||____|:_:|||||::|_:|||\n______________ACACGA_UACGU_CA____GU_UUUUCCUUC_UUCU\n3'-UUU...AGUUA_______________UUAA__U_________A____GUUAU...ACG-5'\n_____________|____________________________________|\n_____________80___________________________________45\n |
217 -- 223 |
51 -- 57 |
-26.8268 kcal/mol |
14.1464 kcal/mol |
5.32077 kcal/mol |
193 229@LB@ | |@LB@5'-AGC...GGAGG G C UGC U C AGGCG...GCG-3'@LB@ UGUGCU AUGUA GU CG GAAAGGGGG GAGA@LB@ |||||| |||:| || |: :|||||::| :|||@LB@ ACACGA UACGU CA GU UUUUCCUUC UUCU@LB@3'-UUU...AGUUA UUAA U A GUUAU...ACG-5'@LB@ | |@LB@ 80 45@LB@@LB@@LB@Energy -7.36 kcal/mol@LB@Hybridization Energy -26.8268 kcal/mol@LB@Unfolding Energy - mRNA 14.1464 kcal/mol@LB@Unfolding Energy - sRNA 5.32077 kcal/mol@LB@@LB@Position - mRNA 194 -- 228@LB@Position - sRNA 46 -- 79@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 51 -- 57@LB@ |