| 96 |
0.002937 |
0.1078 |
b1539 |
ydfG |
-11.63 |
0.043083 |
159 -- 205 |
42 -- 78 |
NADP-dependent 3-hydroxy acid dehydrogenase; malonic semialdehyde reductase |
|
_____________158_____________________________________________206\n_____________|_______________________________________________|\n5'-GAU...AUCCC_________UAUUGACACA_____GCGUU_____AC___________CGUUU...GCC-3'\n______________GUGCUAUGU__________CAAAA_____GAGGA__AGUGAGAUGAU\n______________||||||||:__________|||||_____:||||__|||:|||::||\n______________CACGAUACG__________GUUUU_____UUCCU__UCAUUCUGUUA\n3'-UUU...GUUAA_________UCAUUAA_______________________________UACCU...ACG-5'\n_____________|_______________________________________________|\n_____________79______________________________________________41\n |
199 -- 205 |
42 -- 48 |
-28.6775 kcal/mol |
11.4217 kcal/mol |
5.62659 kcal/mol |
158 206@LB@ | |@LB@5'-GAU...AUCCC UAUUGACACA GCGUU AC CGUUU...GCC-3'@LB@ GUGCUAUGU CAAAA GAGGA AGUGAGAUGAU@LB@ ||||||||: ||||| :|||| |||:|||::||@LB@ CACGAUACG GUUUU UUCCU UCAUUCUGUUA@LB@3'-UUU...GUUAA UCAUUAA UACCU...ACG-5'@LB@ | |@LB@ 79 41@LB@@LB@@LB@Energy -11.63 kcal/mol@LB@Hybridization Energy -28.6775 kcal/mol@LB@Unfolding Energy - mRNA 11.4217 kcal/mol@LB@Unfolding Energy - sRNA 5.62659 kcal/mol@LB@@LB@Position - mRNA 159 -- 205@LB@Position - sRNA 42 -- 78@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 26 |
0.000123 |
0.01616 |
b3280 |
yrdB |
-11.55 |
0.045184 |
198 -- 244 |
43 -- 92 |
DUF1488 family protein |
|
_____________197__________________________________________________245\n_____________|____________________________________________________|\n5'-CCA...UUGUC__CG______________C__C____UUC_____C_____AG__________GAAUA...GCG-3'\n______________CG__UGAAUCAG____GC_AU_CAGU____CGGA_AGGGA__AGUGGGACGA\n______________||__:||||||:____||_||_||||____|::|_|:|||__|||::|||:|\n______________GC__GCUUAGUU____CG_UA_GUCA____GUUU_UUCCU__UCAUUCUGUU\n3'-UUU...CCGCA__AU________AACA__A__C____UUAA____U_________________AUACC...ACG-5'\n_____________|____________________________________________________|\n_____________93___________________________________________________42\n |
238 -- 244 |
43 -- 49 |
-31.3697 kcal/mol |
13.9577 kcal/mol |
5.86211 kcal/mol |
197 245@LB@ | |@LB@5'-CCA...UUGUC CG C C UUC C AG GAAUA...GCG-3'@LB@ CG UGAAUCAG GC AU CAGU CGGA AGGGA AGUGGGACGA@LB@ || :||||||: || || |||| |::| |:||| |||::|||:|@LB@ GC GCUUAGUU CG UA GUCA GUUU UUCCU UCAUUCUGUU@LB@3'-UUU...CCGCA AU AACA A C UUAA U AUACC...ACG-5'@LB@ | |@LB@ 93 42@LB@@LB@@LB@Energy -11.55 kcal/mol@LB@Hybridization Energy -31.3697 kcal/mol@LB@Unfolding Energy - mRNA 13.9577 kcal/mol@LB@Unfolding Energy - sRNA 5.86211 kcal/mol@LB@@LB@Position - mRNA 198 -- 244@LB@Position - sRNA 43 -- 92@LB@Position Seed - mRNA 238 -- 244@LB@Position Seed - sRNA 43 -- 49@LB@ |
| 48 |
0.0005049 |
0.03706 |
b2331 |
smrB |
-12.55 |
0.024312 |
152 -- 200 |
43 -- 92 |
putative DNA endonuclease |
|
_____________151__________________________________________________201\n_____________|____________________________________________________|\n5'-UCA...GAUUG__C__________GUAAAC_______GAAAA_______UA___AC_______AUGAA...GAC-3'\n______________CG_UACGAGUCGG________UGUAG_____UUAGAAA__GAG___AGAUAA\n______________||_|||||:||::________||:||_____|:|:|||__||:___|||:||\n______________GC_AUGCUUAGUU________ACGUC_____AGUUUUU__CUU___UCUGUU\n3'-UUU...CCGCA_____________AACACGAU_____AUUA________UC___CAU______AUACC...ACG-5'\n_____________|____________________________________________________|\n_____________93___________________________________________________42\n |
158 -- 164 |
81 -- 87 |
-25.319 kcal/mol |
6.91043 kcal/mol |
5.86211 kcal/mol |
151 201@LB@ | |@LB@5'-UCA...GAUUG C GUAAAC GAAAA UA AC AUGAA...GAC-3'@LB@ CG UACGAGUCGG UGUAG UUAGAAA GAG AGAUAA@LB@ || |||||:||:: ||:|| |:|:||| ||: |||:||@LB@ GC AUGCUUAGUU ACGUC AGUUUUU CUU UCUGUU@LB@3'-UUU...CCGCA AACACGAU AUUA UC CAU AUACC...ACG-5'@LB@ | |@LB@ 93 42@LB@@LB@@LB@Energy -12.55 kcal/mol@LB@Hybridization Energy -25.319 kcal/mol@LB@Unfolding Energy - mRNA 6.91043 kcal/mol@LB@Unfolding Energy - sRNA 5.86211 kcal/mol@LB@@LB@Position - mRNA 152 -- 200@LB@Position - sRNA 43 -- 92@LB@Position Seed - mRNA 158 -- 164@LB@Position Seed - sRNA 81 -- 87@LB@ |
| 103 |
0.003335 |
0.1114 |
b3494 |
uspB |
-9.88 |
0.117554 |
193 -- 207 |
43 -- 57 |
universal stress (ethanol tolerance) protein B |
|
_____________192_____________208\n_____________|_______________|\n5'-AAU...CCGGG_________U_____GCACC...UGC-3'\n______________GAGGAGGUA_GAUAA\n______________:||||:|||_||:||\n______________UUCCUUCAU_CUGUU\n3'-UUU...GUUUU_________U_____AUACC...ACG-5'\n_____________|_______________|\n_____________58______________42\n |
195 -- 201 |
49 -- 55 |
-16.0492 kcal/mol |
4.41466 kcal/mol |
1.75421 kcal/mol |
192 208@LB@ | |@LB@5'-AAU...CCGGG U GCACC...UGC-3'@LB@ GAGGAGGUA GAUAA@LB@ :||||:||| ||:||@LB@ UUCCUUCAU CUGUU@LB@3'-UUU...GUUUU U AUACC...ACG-5'@LB@ | |@LB@ 58 42@LB@@LB@@LB@Energy -9.88 kcal/mol@LB@Hybridization Energy -16.0492 kcal/mol@LB@Unfolding Energy - mRNA 4.41466 kcal/mol@LB@Unfolding Energy - sRNA 1.75421 kcal/mol@LB@@LB@Position - mRNA 193 -- 207@LB@Position - sRNA 43 -- 57@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 49 -- 55@LB@ |
| 105 |
0.003386 |
0.1114 |
b0517 |
allD |
-12.14 |
0.031589 |
151 -- 204 |
43 -- 92 |
ureidoglycolate dehydrogenase |
b0801 |
_____________150______________________________________________________205\n_____________|________________________________________________________|\n5'-AAA...UUCCC_______________CA__C____UUCACACCG___UU__________AC______AAAUC...UGG-3'\n______________UGUAUG__UUAAUUG__GU_AUGC_________UCG__AAAAAGGAAG__AGAUGA\n______________:|||:|__|:|||||__|:_||||_________||:__||||||||||__|||::|\n______________GCAUGC__AGUUAAC__CG_UACG_________AGU__UUUUUCCUUC__UCUGUU\n3'-UUU...CCGCA______UU_______A___A____UCAUUA__________________AU______AUACC...ACG-5'\n_____________|________________________________________________________|\n_____________93_______________________________________________________42\n |
190 -- 196 |
51 -- 57 |
-28.1957 kcal/mol |
10.2009 kcal/mol |
5.86211 kcal/mol |
150 205@LB@ | |@LB@5'-AAA...UUCCC CA C UUCACACCG UU AC AAAUC...UGG-3'@LB@ UGUAUG UUAAUUG GU AUGC UCG AAAAAGGAAG AGAUGA@LB@ :|||:| |:||||| |: |||| ||: |||||||||| |||::|@LB@ GCAUGC AGUUAAC CG UACG AGU UUUUUCCUUC UCUGUU@LB@3'-UUU...CCGCA UU A A UCAUUA AU AUACC...ACG-5'@LB@ | |@LB@ 93 42@LB@@LB@@LB@Energy -12.14 kcal/mol@LB@Hybridization Energy -28.1957 kcal/mol@LB@Unfolding Energy - mRNA 10.2009 kcal/mol@LB@Unfolding Energy - sRNA 5.86211 kcal/mol@LB@@LB@Position - mRNA 151 -- 204@LB@Position - sRNA 43 -- 92@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 128 |
0.004569 |
0.1258 |
b3033 |
yqiB |
-9.35 |
0.155553 |
90 -- 130 |
43 -- 87 |
DUF1249 protein YqiB |
|
_____________89_____________________________________________131\n_____________|______________________________________________|\n5'-UGG...GCCGG_____________AUAC______GUA__________AAAUC_____CGCAG...GCG-3'\n______________GAA_CAG____GC____CAGUGG___GAAGAGGGGA_____GACAA\n______________|||_||:____||____||||::___:||:|:||:|_____|||||\n______________CUU_GUU____CG____GUCAUU___UUUUUUCCUU_____CUGUU\n3'-UUU...GCAUG___A___AACA__AUAC______AAG__________CAUU______AUACC...ACG-5'\n_____________|______________________________________________|\n_____________88_____________________________________________42\n |
114 -- 120 |
52 -- 58 |
-22.1335 kcal/mol |
7.07839 kcal/mol |
5.71172 kcal/mol |
89 131@LB@ | |@LB@5'-UGG...GCCGG AUAC GUA AAAUC CGCAG...GCG-3'@LB@ GAA CAG GC CAGUGG GAAGAGGGGA GACAA@LB@ ||| ||: || ||||:: :||:|:||:| |||||@LB@ CUU GUU CG GUCAUU UUUUUUCCUU CUGUU@LB@3'-UUU...GCAUG A AACA AUAC AAG CAUU AUACC...ACG-5'@LB@ | |@LB@ 88 42@LB@@LB@@LB@Energy -9.35 kcal/mol@LB@Hybridization Energy -22.1335 kcal/mol@LB@Unfolding Energy - mRNA 7.07839 kcal/mol@LB@Unfolding Energy - sRNA 5.71172 kcal/mol@LB@@LB@Position - mRNA 90 -- 130@LB@Position - sRNA 43 -- 87@LB@Position Seed - mRNA 114 -- 120@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 159 |
0.006259 |
0.1377 |
b2194 |
ccmH |
-11.29 |
0.052751 |
252 -- 296 |
43 -- 89 |
heme lyase CcmH subunit |
|
_____________251__________________________________________________297\n_____________|____________________________________________________|\n5'-CUG...CGCUG____CC_____________________________U_____CAC___A____CAGU-3'\n______________GCGA__AUCGA_UGUGUUG__CAGU___UUAAAGA__GAAG___AGG_ACAA\n______________:|||__|||:|_||||:|:__||||___|:|||:|__||||___|:|_||||\n______________UGCU__UAGUU_ACACGAU__GUCA___AGUUUUU__CUUC___UUC_UGUU\n3'-UUU...CAGCA___________A_______AC____UUA_______UC____A__________AUACC...ACG-5'\n_____________|____________________________________________________|\n_____________90___________________________________________________42\n |
263 -- 269 |
73 -- 79 |
-25.337 kcal/mol |
8.31324 kcal/mol |
5.7326 kcal/mol |
251 297@LB@ | |@LB@5'-CUG...CGCUG CC U CAC A CAGU-3'@LB@ GCGA AUCGA UGUGUUG CAGU UUAAAGA GAAG AGG ACAA@LB@ :||| |||:| ||||:|: |||| |:|||:| |||| |:| ||||@LB@ UGCU UAGUU ACACGAU GUCA AGUUUUU CUUC UUC UGUU@LB@3'-UUU...CAGCA A AC UUA UC A AUACC...ACG-5'@LB@ | |@LB@ 90 42@LB@@LB@@LB@Energy -11.29 kcal/mol@LB@Hybridization Energy -25.337 kcal/mol@LB@Unfolding Energy - mRNA 8.31324 kcal/mol@LB@Unfolding Energy - sRNA 5.7326 kcal/mol@LB@@LB@Position - mRNA 252 -- 296@LB@Position - sRNA 43 -- 89@LB@Position Seed - mRNA 263 -- 269@LB@Position Seed - sRNA 73 -- 79@LB@ |
| 193 |
0.00868 |
0.1548 |
b4226 |
ppa |
-9.88 |
0.117380 |
102 -- 122 |
43 -- 61 |
inorganic pyrophosphatase |
|
_____________101___________________123\n_____________|_____________________|\n5'-AUA...CUGGU__________AAUG_______AAACA...UCG-3'\n______________GAAAAAGGAA____AAGACGA\n______________:|||||||||____|||||:|\n______________UUUUUUCCUU____UUCUGUU\n3'-UUU...UUAAG__________CA_________AUACC...ACG-5'\n_____________|_____________________|\n_____________62____________________42\n |
116 -- 122 |
43 -- 49 |
-15.2744 kcal/mol |
3.19261 kcal/mol |
2.19883 kcal/mol |
101 123@LB@ | |@LB@5'-AUA...CUGGU AAUG AAACA...UCG-3'@LB@ GAAAAAGGAA AAGACGA@LB@ :||||||||| |||||:|@LB@ UUUUUUCCUU UUCUGUU@LB@3'-UUU...UUAAG CA AUACC...ACG-5'@LB@ | |@LB@ 62 42@LB@@LB@@LB@Energy -9.88 kcal/mol@LB@Hybridization Energy -15.2744 kcal/mol@LB@Unfolding Energy - mRNA 3.19261 kcal/mol@LB@Unfolding Energy - sRNA 2.19883 kcal/mol@LB@@LB@Position - mRNA 102 -- 122@LB@Position - sRNA 43 -- 61@LB@Position Seed - mRNA 116 -- 122@LB@Position Seed - sRNA 43 -- 49@LB@ |
| 45 |
0.0004696 |
0.03623 |
b4035 |
malK |
-9.83 |
0.120497 |
188 -- 201 |
44 -- 57 |
maltose ABC transportor ATPase |
|
_____________187____________202\n_____________|______________|\n5'-CGC...UUACA_______A______UGGCG...UGU-3'\n______________AAGGGAG_AGGGCA\n______________||||:||_|:|:||\n______________UUCCUUC_UUCUGU\n3'-UUU...GUUUU_______A______UAUAC...ACG-5'\n_____________|______________|\n_____________58_____________43\n |
188 -- 194 |
51 -- 57 |
-14.5332 kcal/mol |
2.95068 kcal/mol |
1.74831 kcal/mol |
187 202@LB@ | |@LB@5'-CGC...UUACA A UGGCG...UGU-3'@LB@ AAGGGAG AGGGCA@LB@ ||||:|| |:|:||@LB@ UUCCUUC UUCUGU@LB@3'-UUU...GUUUU A UAUAC...ACG-5'@LB@ | |@LB@ 58 43@LB@@LB@@LB@Energy -9.83 kcal/mol@LB@Hybridization Energy -14.5332 kcal/mol@LB@Unfolding Energy - mRNA 2.95068 kcal/mol@LB@Unfolding Energy - sRNA 1.74831 kcal/mol@LB@@LB@Position - mRNA 188 -- 201@LB@Position - sRNA 44 -- 57@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 50 |
0.0005726 |
0.04013 |
b2215 |
ompC |
-10.22 |
0.097386 |
138 -- 180 |
44 -- 87 |
outer membrane porin protein C |
b0929 b0241 b1377 |
_____________137___________________________________________181\n_____________|_____________________________________________|\n5'-AUC...AAUGA________CAG____________CA________CAAAUA______UAUAA...AUC-3'\n______________GGGUUAAU_____UAUGCAGUGG__UAAAAAAG______AAGGCA\n______________|::|:|||_____||||||||::__:|||||||______|||:||\n______________CUUAGUUA_____AUACGUCAUU__GUUUUUUC______UUCUGU\n3'-UUU...GCAUG________ACACG__________AA________CUUCA_______UAUAC...ACG-5'\n_____________|_____________________________________________|\n_____________88____________________________________________43\n |
162 -- 168 |
55 -- 61 |
-25.937 kcal/mol |
10.0096 kcal/mol |
5.70573 kcal/mol |
137 181@LB@ | |@LB@5'-AUC...AAUGA CAG CA CAAAUA UAUAA...AUC-3'@LB@ GGGUUAAU UAUGCAGUGG UAAAAAAG AAGGCA@LB@ |::|:||| ||||||||:: :||||||| |||:||@LB@ CUUAGUUA AUACGUCAUU GUUUUUUC UUCUGU@LB@3'-UUU...GCAUG ACACG AA CUUCA UAUAC...ACG-5'@LB@ | |@LB@ 88 43@LB@@LB@@LB@Energy -10.22 kcal/mol@LB@Hybridization Energy -25.937 kcal/mol@LB@Unfolding Energy - mRNA 10.0096 kcal/mol@LB@Unfolding Energy - sRNA 5.70573 kcal/mol@LB@@LB@Position - mRNA 138 -- 180@LB@Position - sRNA 44 -- 87@LB@Position Seed - mRNA 162 -- 168@LB@Position Seed - sRNA 55 -- 61@LB@ |
