| 8 |
0.0004259 |
0.161 |
b4019 |
metH |
-17.34 |
0.010954 |
191 -- 208 |
42 -- 58 |
homocysteine-N5-methyltetrahydrofolate transmethylase B12-dependent |
|
_____________190________________209\n_____________|__________________|\n5'-UGA...GUGUC______A___________CAAAG...ACG-3'\n______________GGGAGC_AGUGUGAGCAG\n______________||:|||_|:||||||||:\n______________CCUUCG_UUACACUCGUU\n3'-UUU...UAUGA__________________ACAGC...GCG-5'\n_____________|__________________|\n_____________59_________________41\n |
202 -- 208 |
42 -- 48 |
-25.1819 kcal/mol |
4.63502 kcal/mol |
3.2101 kcal/mol |
190 209@LB@ | |@LB@5'-UGA...GUGUC A CAAAG...ACG-3'@LB@ GGGAGC AGUGUGAGCAG@LB@ ||:||| |:||||||||:@LB@ CCUUCG UUACACUCGUU@LB@3'-UUU...UAUGA ACAGC...GCG-5'@LB@ | |@LB@ 59 41@LB@@LB@@LB@Energy -17.34 kcal/mol@LB@Hybridization Energy -25.1819 kcal/mol@LB@Unfolding Energy - mRNA 4.63502 kcal/mol@LB@Unfolding Energy - sRNA 3.2101 kcal/mol@LB@@LB@Position - mRNA 191 -- 208@LB@Position - sRNA 42 -- 58@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 100 |
0.01027 |
0.3393 |
b0661 |
miaB |
-11.26 |
0.118120 |
162 -- 200 |
37 -- 86 |
tRNA-i(6)A37 methylthiotransferase |
|
_____________161_________________________________________________201\n_____________|___________________________________________________|\n5'-CGC...UAUGC___CU_______________C________UC____________________AUGAC...AAC-3'\n______________GCC__GCAUUC__CUGGCUA_____UAUU____GCAA___GAGCAA_GUCG\n______________|||__|||::|__|||||||_____||:|____||||___||||||_||||\n______________CGG__CGUGGG__GACCGAU_____AUGA____CGUU___CUCGUU_CAGC\n_______3'-UUUU___U_______CC_______UCAUU____CCUU____ACA______A____ACGAA...GCG-5'\n_____________|___________________________________________________|\n_____________87__________________________________________________36\n |
173 -- 179 |
68 -- 74 |
-35.2592 kcal/mol |
9.08526 kcal/mol |
14.9108 kcal/mol |
161 201@LB@ | |@LB@5'-CGC...UAUGC CU C UC AUGAC...AAC-3'@LB@ GCC GCAUUC CUGGCUA UAUU GCAA GAGCAA GUCG@LB@ ||| |||::| ||||||| ||:| |||| |||||| ||||@LB@ CGG CGUGGG GACCGAU AUGA CGUU CUCGUU CAGC@LB@ 3'-UUUU U CC UCAUU CCUU ACA A ACGAA...GCG-5'@LB@ | |@LB@ 87 36@LB@@LB@@LB@Energy -11.26 kcal/mol@LB@Hybridization Energy -35.2592 kcal/mol@LB@Unfolding Energy - mRNA 9.08526 kcal/mol@LB@Unfolding Energy - sRNA 14.9108 kcal/mol@LB@@LB@Position - mRNA 162 -- 200@LB@Position - sRNA 37 -- 86@LB@Position Seed - mRNA 173 -- 179@LB@Position Seed - sRNA 68 -- 74@LB@ |
| 90 |
0.009279 |
0.3393 |
b0817 |
mntR |
-11.60 |
0.104050 |
186 -- 211 |
37 -- 65 |
Mn(2+)-responsive manganese regulon transcriptional regulator |
|
_____________185___________________________212\n_____________|_____________________________|\n5'-CUU...CACCA_____A________CAA_____C______CGCAG...AUC-3'\n______________UAAUG__GGAAGCA___UGAGU___GUCG\n______________||||:__|||||||___||||:___||||\n______________AUUAU__CCUUCGU___ACUCG___CAGC\n3'-UUU...GAUUC_____GA_______UAC_____UUA____ACGAA...GCG-5'\n_____________|_____________________________|\n_____________66____________________________36\n |
192 -- 198 |
52 -- 58 |
-22.6144 kcal/mol |
7.71005 kcal/mol |
3.30549 kcal/mol |
185 212@LB@ | |@LB@5'-CUU...CACCA A CAA C CGCAG...AUC-3'@LB@ UAAUG GGAAGCA UGAGU GUCG@LB@ ||||: ||||||| ||||: ||||@LB@ AUUAU CCUUCGU ACUCG CAGC@LB@3'-UUU...GAUUC GA UAC UUA ACGAA...GCG-5'@LB@ | |@LB@ 66 36@LB@@LB@@LB@Energy -11.60 kcal/mol@LB@Hybridization Energy -22.6144 kcal/mol@LB@Unfolding Energy - mRNA 7.71005 kcal/mol@LB@Unfolding Energy - sRNA 3.30549 kcal/mol@LB@@LB@Position - mRNA 186 -- 211@LB@Position - sRNA 37 -- 65@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 109 |
0.01153 |
0.3513 |
b0826 |
moeB |
-14.46 |
0.034286 |
118 -- 145 |
37 -- 63 |
molybdopterin synthase sulfurylase |
|
_____________117__________________________146\n_____________|____________________________|\n5'-CUU...UUAUC_________C_____CGC________G_AAGUG...GCG-3'\n______________GUGCUGGAA_GCGAU___GGCAAUGU_G\n______________:|:||||||_||:||___:|||||||_|\n______________UAUGACCUU_CGUUA___UCGUUACA_C\n3'-UUU...UUCAU_______________CAC________G_ACGAA...GCG-5'\n_____________|____________________________|\n_____________64___________________________36\n |
137 -- 143 |
39 -- 45 |
-30.0553 kcal/mol |
12.2918 kcal/mol |
3.30267 kcal/mol |
117 146@LB@ | |@LB@5'-CUU...UUAUC C CGC G AAGUG...GCG-3'@LB@ GUGCUGGAA GCGAU GGCAAUGU G@LB@ :|:|||||| ||:|| :||||||| |@LB@ UAUGACCUU CGUUA UCGUUACA C@LB@3'-UUU...UUCAU CAC G ACGAA...GCG-5'@LB@ | |@LB@ 64 36@LB@@LB@@LB@Energy -14.46 kcal/mol@LB@Hybridization Energy -30.0553 kcal/mol@LB@Unfolding Energy - mRNA 12.2918 kcal/mol@LB@Unfolding Energy - sRNA 3.30267 kcal/mol@LB@@LB@Position - mRNA 118 -- 145@LB@Position - sRNA 37 -- 63@LB@Position Seed - mRNA 137 -- 143@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 61 |
0.005602 |
0.2905 |
b1778 |
msrB |
-11.92 |
0.091967 |
166 -- 177 |
43 -- 54 |
methionine sulfoxide reductase B |
|
_____________165__________178\n_____________|____________|\n5'-CUU...GUCAC____________CGAUU...GUC-3'\n______________GUAAUGUGAGCA\n______________|:||||||||||\n______________CGUUACACUCGU\n3'-UUU...ACCUU____________UACAG...GCG-5'\n_____________|____________|\n_____________55___________42\n |
171 -- 177 |
43 -- 49 |
-18.0171 kcal/mol |
2.89402 kcal/mol |
3.19978 kcal/mol |
165 178@LB@ | |@LB@5'-CUU...GUCAC CGAUU...GUC-3'@LB@ GUAAUGUGAGCA@LB@ |:||||||||||@LB@ CGUUACACUCGU@LB@3'-UUU...ACCUU UACAG...GCG-5'@LB@ | |@LB@ 55 42@LB@@LB@@LB@Energy -11.92 kcal/mol@LB@Hybridization Energy -18.0171 kcal/mol@LB@Unfolding Energy - mRNA 2.89402 kcal/mol@LB@Unfolding Energy - sRNA 3.19978 kcal/mol@LB@@LB@Position - mRNA 166 -- 177@LB@Position - sRNA 43 -- 54@LB@Position Seed - mRNA 171 -- 177@LB@Position Seed - sRNA 43 -- 49@LB@ |
| 142 |
0.01677 |
0.3964 |
b3208 |
mtgA |
-9.50 |
0.224857 |
30 -- 43 |
54 -- 67 |
biosynthetic peptidoglycan transglycosylase |
|
_____________29_____________44\n_____________|______________|\n5'-UUG...ACCGC__A___________AGAUG...UGU-3'\n______________AG_AGUGCUGGAAG\n______________||_|:|:|||||||\n______________UC_UUAUGACCUUC\n3'-UUU...CCGAU__A___________GUUAC...GCG-5'\n_____________|______________|\n_____________68_____________53\n |
37 -- 43 |
54 -- 60 |
-16.1342 kcal/mol |
3.92242 kcal/mol |
2.71077 kcal/mol |
29 44@LB@ | |@LB@5'-UUG...ACCGC A AGAUG...UGU-3'@LB@ AG AGUGCUGGAAG@LB@ || |:|:|||||||@LB@ UC UUAUGACCUUC@LB@3'-UUU...CCGAU A GUUAC...GCG-5'@LB@ | |@LB@ 68 53@LB@@LB@@LB@Energy -9.50 kcal/mol@LB@Hybridization Energy -16.1342 kcal/mol@LB@Unfolding Energy - mRNA 3.92242 kcal/mol@LB@Unfolding Energy - sRNA 2.71077 kcal/mol@LB@@LB@Position - mRNA 30 -- 43@LB@Position - sRNA 54 -- 67@LB@Position Seed - mRNA 37 -- 43@LB@Position Seed - sRNA 54 -- 60@LB@ |
| 3 |
2.244e-05 |
0.02513 |
b1107 |
nagZ |
-17.54 |
0.010122 |
191 -- 218 |
37 -- 58 |
beta N-acetyl-glucosaminidase |
|
_____________190__________________________219\n_____________|____________________________|\n5'-AUU...AAUAA___G_________GGUCC__________GAUGU...CGC-3'\n______________GGA_AGCAGUGUG_____AGUAAUGUUG\n______________|||_||||:||||_____||:|||||:|\n______________CCU_UCGUUACAC_____UCGUUACAGC\n3'-UUU...UAUGA____________________________ACGAA...GCG-5'\n_____________|____________________________|\n_____________59___________________________36\n |
212 -- 218 |
37 -- 43 |
-27.3301 kcal/mol |
6.56806 kcal/mol |
3.22699 kcal/mol |
190 219@LB@ | |@LB@5'-AUU...AAUAA G GGUCC GAUGU...CGC-3'@LB@ GGA AGCAGUGUG AGUAAUGUUG@LB@ ||| ||||:|||| ||:|||||:|@LB@ CCU UCGUUACAC UCGUUACAGC@LB@3'-UUU...UAUGA ACGAA...GCG-5'@LB@ | |@LB@ 59 36@LB@@LB@@LB@Energy -17.54 kcal/mol@LB@Hybridization Energy -27.3301 kcal/mol@LB@Unfolding Energy - mRNA 6.56806 kcal/mol@LB@Unfolding Energy - sRNA 3.22699 kcal/mol@LB@@LB@Position - mRNA 191 -- 218@LB@Position - sRNA 37 -- 58@LB@Position Seed - mRNA 212 -- 218@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 182 |
0.02236 |
0.4113 |
b2206 |
napA |
-12.10 |
0.085901 |
76 -- 101 |
42 -- 66 |
nitrate reductase periplasmic large subunit |
|
_____________75_________________________102\n_____________|__________________________|\n5'-GAC...UGAUU______G_________AAGAC_____AACGC...UUG-3'\n______________GUGGUG_UGGAAGCAG_____AGCGA\n______________||::|:_||||||||:_____|||:|\n______________CAUUAU_ACCUUCGUU_____UCGUU\n3'-UUU...CGAUU______G_________ACAC______ACAGC...GCG-5'\n_____________|__________________________|\n_____________67_________________________41\n |
85 -- 91 |
51 -- 57 |
-24.6932 kcal/mol |
9.28668 kcal/mol |
3.30477 kcal/mol |
75 102@LB@ | |@LB@5'-GAC...UGAUU G AAGAC AACGC...UUG-3'@LB@ GUGGUG UGGAAGCAG AGCGA@LB@ ||::|: ||||||||: |||:|@LB@ CAUUAU ACCUUCGUU UCGUU@LB@3'-UUU...CGAUU G ACAC ACAGC...GCG-5'@LB@ | |@LB@ 67 41@LB@@LB@@LB@Energy -12.10 kcal/mol@LB@Hybridization Energy -24.6932 kcal/mol@LB@Unfolding Energy - mRNA 9.28668 kcal/mol@LB@Unfolding Energy - sRNA 3.30477 kcal/mol@LB@@LB@Position - mRNA 76 -- 101@LB@Position - sRNA 42 -- 66@LB@Position Seed - mRNA 85 -- 91@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 94 |
0.009954 |
0.3393 |
b2208 |
napF |
-14.80 |
0.029998 |
183 -- 242 |
1 -- 65 |
ferredoxin-type protein role in electron transfer to periplasmic nitrate reductase NapA |
|
_____________182____________________________________________________________________243\n_____________|______________________________________________________________________|\n5'-CCA...CGCGU_____A______GU________AG_U__A_____A_____________U_____CAUA__CA________UGGCG...UUC-3'\n______________UAAUG_UGGAAG__CAAUGUGA__A_UG___UGC________UC_CCG_CGGGG____CU__CUGGUCGC\n______________||||:_||||||__||||||||__|_||___|||________||_|||_||:||____||__|||:||||\n______________AUUAU_ACCUUC__GUUACACU__U_AC___ACG________AG_GGC_GCUCC____GA__GACUAGCG\n3'-UUU...GAUUC_____G________________CG_U__AGC___AAAGUCCA__A_________CA____AG________-5'\n_____________|_____________________________________________________________________|\n_____________66____________________________________________________________________1\n |
236 -- 242 |
1 -- 7 |
-47.7557 kcal/mol |
18.8316 kcal/mol |
14.1245 kcal/mol |
182 243@LB@ | |@LB@5'-CCA...CGCGU A GU AG U A A U CAUA CA UGGCG...UUC-3'@LB@ UAAUG UGGAAG CAAUGUGA A UG UGC UC CCG CGGGG CU CUGGUCGC@LB@ ||||: |||||| |||||||| | || ||| || ||| ||:|| || |||:||||@LB@ AUUAU ACCUUC GUUACACU U AC ACG AG GGC GCUCC GA GACUAGCG@LB@3'-UUU...GAUUC G CG U AGC AAAGUCCA A CA AG -5'@LB@ | |@LB@ 66 1@LB@@LB@@LB@Energy -14.80 kcal/mol@LB@Hybridization Energy -47.7557 kcal/mol@LB@Unfolding Energy - mRNA 18.8316 kcal/mol@LB@Unfolding Energy - sRNA 14.1245 kcal/mol@LB@@LB@Position - mRNA 183 -- 242@LB@Position - sRNA 1 -- 65@LB@Position Seed - mRNA 236 -- 242@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 147 |
0.01756 |
0.3998 |
b2204 |
napH |
-8.83 |
0.283291 |
175 -- 212 |
36 -- 85 |
ferredoxin-type protein |
|
_____________174________________________________________________213\n_____________|__________________________________________________|\n5'-CAC...CAUUA_______________________GG___________________A_____AAACG...UCU-3'\n______________CC_GC_UUCGGCUGGCUG___GA____GGAA_CAAUG___GCAA__UCGU\n______________||_||_::|||||||||:___:|____||||_|||||___||||__||||\n______________GG_CG_GGGCCGACCGAU___UU____CCUU_GUUAC___CGUU__AGCA\n______3'-UUUUC__U__U____________UCA__AUGA____C_____ACU____AC____CGAAA...GCG-5'\n_____________|__________________________________________________|\n_____________86_________________________________________________35\n |
183 -- 189 |
69 -- 75 |
-37.9033 kcal/mol |
14.1609 kcal/mol |
14.9108 kcal/mol |
174 213@LB@ | |@LB@5'-CAC...CAUUA GG A AAACG...UCU-3'@LB@ CC GC UUCGGCUGGCUG GA GGAA CAAUG GCAA UCGU@LB@ || || ::|||||||||: :| |||| ||||| |||| ||||@LB@ GG CG GGGCCGACCGAU UU CCUU GUUAC CGUU AGCA@LB@ 3'-UUUUC U U UCA AUGA C ACU AC CGAAA...GCG-5'@LB@ | |@LB@ 86 35@LB@@LB@@LB@Energy -8.83 kcal/mol@LB@Hybridization Energy -37.9033 kcal/mol@LB@Unfolding Energy - mRNA 14.1609 kcal/mol@LB@Unfolding Energy - sRNA 14.9108 kcal/mol@LB@@LB@Position - mRNA 175 -- 212@LB@Position - sRNA 36 -- 85@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 69 -- 75@LB@ |
