| 141 |
0.01639 |
0.3906 |
b1585 |
ynfC |
-13.03 |
0.059974 |
17 -- 62 |
43 -- 84 |
UPF0257 family lipoprotein |
|
_____________16______________________________________________63\n_____________|_______________________________________________|\n5'-GCU...GCUCA___G_U______GC_________CC__GG_U_______GG_C_____GAAGC...UCU-3'\n______________CAG_A_CCCGGC__GGC_GAGUA__GC__G_GAGGCGA__G_GAGCA\n______________|||_|_||||||__|||_:||||__:|__|_||:||:|__|_|||||\n______________GUC_U_GGGCCG__CCG_UUCAU__UG__C_CUUCGUU__C_CUCGU\n_____3'-UUUUCG___G________A____A_____UA__A__________A__A_____UACAG...GCG-5'\n_____________|_______________________________________________|\n_____________85______________________________________________42\n |
47 -- 53 |
51 -- 57 |
-45.3683 kcal/mol |
17.4395 kcal/mol |
14.8963 kcal/mol |
16 63@LB@ | |@LB@5'-GCU...GCUCA G U GC CC GG U GG C GAAGC...UCU-3'@LB@ CAG A CCCGGC GGC GAGUA GC G GAGGCGA G GAGCA@LB@ ||| | |||||| ||| :|||| :| | ||:||:| | |||||@LB@ GUC U GGGCCG CCG UUCAU UG C CUUCGUU C CUCGU@LB@ 3'-UUUUCG G A A UA A A A UACAG...GCG-5'@LB@ | |@LB@ 85 42@LB@@LB@@LB@Energy -13.03 kcal/mol@LB@Hybridization Energy -45.3683 kcal/mol@LB@Unfolding Energy - mRNA 17.4395 kcal/mol@LB@Unfolding Energy - sRNA 14.8963 kcal/mol@LB@@LB@Position - mRNA 17 -- 62@LB@Position - sRNA 43 -- 84@LB@Position Seed - mRNA 47 -- 53@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 159 |
0.02005 |
0.4072 |
b1725 |
yniA |
-13.71 |
0.046110 |
65 -- 84 |
43 -- 60 |
fructosamine kinase family protein |
|
_____________64___________________85\n_____________|____________________|\n5'-GAG...ACGAC_______G____GAAU____ACAGA...GGC-3'\n______________CUGGGAG_AAUG____AGCA\n______________||||:||_||||____||||\n______________GACCUUC_UUAC____UCGU\n3'-UUU...AUUAU_______G____AC______UACAG...GCG-5'\n_____________|____________________|\n_____________61___________________42\n |
65 -- 71 |
54 -- 60 |
-19.5513 kcal/mol |
2.54567 kcal/mol |
3.29917 kcal/mol |
64 85@LB@ | |@LB@5'-GAG...ACGAC G GAAU ACAGA...GGC-3'@LB@ CUGGGAG AAUG AGCA@LB@ ||||:|| |||| ||||@LB@ GACCUUC UUAC UCGU@LB@3'-UUU...AUUAU G AC UACAG...GCG-5'@LB@ | |@LB@ 61 42@LB@@LB@@LB@Energy -13.71 kcal/mol@LB@Hybridization Energy -19.5513 kcal/mol@LB@Unfolding Energy - mRNA 2.54567 kcal/mol@LB@Unfolding Energy - sRNA 3.29917 kcal/mol@LB@@LB@Position - mRNA 65 -- 84@LB@Position - sRNA 43 -- 60@LB@Position Seed - mRNA 65 -- 71@LB@Position Seed - sRNA 54 -- 60@LB@ |
| 77 |
0.00734 |
0.3134 |
b1793 |
yoaF |
-12.59 |
0.071143 |
233 -- 250 |
68 -- 86 |
DUF333 family outer membrane lipoprotein |
|
_____________232_________________251\n_____________|___________________|\n5'-GAU...UGCUU___________________UUCAA...UGG-3'\n______________GCUGGU_CCUGGCUGGUUG\n______________||::|:_||:||||||:|:\n______________CGGUCG_GGGCCGACCGAU\n_______3'-UUUU______U____________UCAUU...GCG-5'\n_____________|___________________|\n_____________87__________________67\n |
243 -- 249 |
69 -- 75 |
-29.581 kcal/mol |
5.32768 kcal/mol |
11.6617 kcal/mol |
232 251@LB@ | |@LB@5'-GAU...UGCUU UUCAA...UGG-3'@LB@ GCUGGU CCUGGCUGGUUG@LB@ ||::|: ||:||||||:|:@LB@ CGGUCG GGGCCGACCGAU@LB@ 3'-UUUU U UCAUU...GCG-5'@LB@ | |@LB@ 87 67@LB@@LB@@LB@Energy -12.59 kcal/mol@LB@Hybridization Energy -29.581 kcal/mol@LB@Unfolding Energy - mRNA 5.32768 kcal/mol@LB@Unfolding Energy - sRNA 11.6617 kcal/mol@LB@@LB@Position - mRNA 233 -- 250@LB@Position - sRNA 68 -- 86@LB@Position Seed - mRNA 243 -- 249@LB@Position Seed - sRNA 69 -- 75@LB@ |
| 126 |
0.01361 |
0.3627 |
b2135 |
yohC |
-14.18 |
0.038247 |
192 -- 212 |
38 -- 58 |
Yip1 family inner membrane protein |
|
_____________191___________________213\n_____________|_____________________|\n5'-CAU...AACAA_________A_____C_____UGGGG...UUU-3'\n______________GGGGGCGGU_UGAGC_AUGUC\n______________||::||::|_|||||_|||||\n______________CCUUCGUUA_ACUCG_UACAG\n3'-UUU...UAUGA_________C_____U_____CACGA...GCG-5'\n_____________|_____________________|\n_____________59____________________37\n |
192 -- 198 |
52 -- 58 |
-26.6444 kcal/mol |
9.24504 kcal/mol |
3.21639 kcal/mol |
191 213@LB@ | |@LB@5'-CAU...AACAA A C UGGGG...UUU-3'@LB@ GGGGGCGGU UGAGC AUGUC@LB@ ||::||::| ||||| |||||@LB@ CCUUCGUUA ACUCG UACAG@LB@3'-UUU...UAUGA C U CACGA...GCG-5'@LB@ | |@LB@ 59 37@LB@@LB@@LB@Energy -14.18 kcal/mol@LB@Hybridization Energy -26.6444 kcal/mol@LB@Unfolding Energy - mRNA 9.24504 kcal/mol@LB@Unfolding Energy - sRNA 3.21639 kcal/mol@LB@@LB@Position - mRNA 192 -- 212@LB@Position - sRNA 38 -- 58@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 20 |
0.001583 |
0.2659 |
b4547 |
ypfN |
-17.32 |
0.011014 |
197 -- 242 |
38 -- 88 |
putative membrane protein UPF0370 family |
|
_____________196_________________________________________________243\n_____________|___________________________________________________|\n5'-UGA...GAAAU____AU_G______________A__U__G____UUCUG_____U_______UUUUU...AGA-3'\n______________AAGC__G_A_CUGGCUGGCUAA_UA_UG_UGGA______GUGA____UGUC\n______________||||__|_|_|:||||||||||_||_|:_||||______||||____||||\n______________UUCG__C_U_GGCCGACCGAUU_AU_AU_ACCU______CACU____ACAG\n_________3'-UU____GU_G_G____________C__U__G____UCGUUA____CGUU____CACGA...GCG-5'\n_____________|___________________________________________________|\n_____________89__________________________________________________37\n |
211 -- 217 |
67 -- 73 |
-42.3158 kcal/mol |
10.0822 kcal/mol |
14.9106 kcal/mol |
196 243@LB@ | |@LB@5'-UGA...GAAAU AU G A U G UUCUG U UUUUU...AGA-3'@LB@ AAGC G A CUGGCUGGCUAA UA UG UGGA GUGA UGUC@LB@ |||| | | |:|||||||||| || |: |||| |||| ||||@LB@ UUCG C U GGCCGACCGAUU AU AU ACCU CACU ACAG@LB@ 3'-UU GU G G C U G UCGUUA CGUU CACGA...GCG-5'@LB@ | |@LB@ 89 37@LB@@LB@@LB@Energy -17.32 kcal/mol@LB@Hybridization Energy -42.3158 kcal/mol@LB@Unfolding Energy - mRNA 10.0822 kcal/mol@LB@Unfolding Energy - sRNA 14.9106 kcal/mol@LB@@LB@Position - mRNA 197 -- 242@LB@Position - sRNA 38 -- 88@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 67 -- 73@LB@ |
| 198 |
0.02503 |
0.4226 |
b2544 |
yphB |
-11.73 |
0.099011 |
68 -- 80 |
47 -- 61 |
mutarotase superfamily protein YphB family |
|
_____________67______________81\n_____________|_______________|\n5'-CGG...GACGG_______________GCCGC...UAC-3'\n______________ACUGGAAGC__UGUG\n______________|||||||||__||||\n______________UGACCUUCG__ACAC\n3'-UUU...CAUUA_________UU____UCGUU...GCG-5'\n_____________|_______________|\n_____________62______________46\n |
70 -- 76 |
53 -- 59 |
-17.6322 kcal/mol |
2.81046 kcal/mol |
3.09217 kcal/mol |
67 81@LB@ | |@LB@5'-CGG...GACGG GCCGC...UAC-3'@LB@ ACUGGAAGC UGUG@LB@ ||||||||| ||||@LB@ UGACCUUCG ACAC@LB@3'-UUU...CAUUA UU UCGUU...GCG-5'@LB@ | |@LB@ 62 46@LB@@LB@@LB@Energy -11.73 kcal/mol@LB@Hybridization Energy -17.6322 kcal/mol@LB@Unfolding Energy - mRNA 2.81046 kcal/mol@LB@Unfolding Energy - sRNA 3.09217 kcal/mol@LB@@LB@Position - mRNA 68 -- 80@LB@Position - sRNA 47 -- 61@LB@Position Seed - mRNA 70 -- 76@LB@Position Seed - sRNA 53 -- 59@LB@ |
| 192 |
0.02457 |
0.4226 |
b2689 |
yqaA |
-16.30 |
0.016522 |
258 -- 300 |
44 -- 85 |
COG1238 family inner membrane protein |
|
_____________257_________________________________________300\n_____________|___________________________________________|\n5'-CAC...CUACA___U________AACUCCG____C_______U________U___-3'\n______________CUA_UACCCGGC_______AAGU_GUGCUGG_GGCAAUGU__GC\n______________|:|_:|||||||_______||||_:|:||||_:|||||||__||\n______________GGU_GUGGGCCG_______UUCA_UAUGACC_UCGUUACA__CG\n______3'-UUUUC___C________ACCGA______U_______U________CU__UUACA...GCG-5'\n_____________|____________________________________________|\n_____________86___________________________________________43\n |
291 -- 297 |
48 -- 54 |
-43.3701 kcal/mol |
12.1561 kcal/mol |
14.9093 kcal/mol |
257 300@LB@ | |@LB@5'-CAC...CUACA U AACUCCG C U U -3'@LB@ CUA UACCCGGC AAGU GUGCUGG GGCAAUGU GC@LB@ |:| :||||||| |||| :|:|||| :||||||| ||@LB@ GGU GUGGGCCG UUCA UAUGACC UCGUUACA CG@LB@ 3'-UUUUC C ACCGA U U CU UUACA...GCG-5'@LB@ | |@LB@ 86 43@LB@@LB@@LB@Energy -16.30 kcal/mol@LB@Hybridization Energy -43.3701 kcal/mol@LB@Unfolding Energy - mRNA 12.1561 kcal/mol@LB@Unfolding Energy - sRNA 14.9093 kcal/mol@LB@@LB@Position - mRNA 258 -- 300@LB@Position - sRNA 44 -- 85@LB@Position Seed - mRNA 291 -- 297@LB@Position Seed - sRNA 48 -- 54@LB@ |
| 196 |
0.02499 |
0.4226 |
b3098 |
yqjD |
-9.33 |
0.238834 |
67 -- 86 |
37 -- 57 |
membrane-anchored ribosome-binding protein |
|
_____________66____________________87\n_____________|_____________________|\n5'-UCA...GAGGC_______AAA________C__AUAAG...AAG-3'\n______________GAAGCAA____GGCGAUG_CG\n______________|||||||____:||:|||_||\n______________CUUCGUU____UCGUUAC_GC\n3'-UUU...AUGAC_______ACAC_______A__ACGAA...GCG-5'\n_____________|_____________________|\n_____________58____________________36\n |
77 -- 83 |
40 -- 46 |
-18.4137 kcal/mol |
5.85817 kcal/mol |
3.2267 kcal/mol |
66 87@LB@ | |@LB@5'-UCA...GAGGC AAA C AUAAG...AAG-3'@LB@ GAAGCAA GGCGAUG CG@LB@ ||||||| :||:||| ||@LB@ CUUCGUU UCGUUAC GC@LB@3'-UUU...AUGAC ACAC A ACGAA...GCG-5'@LB@ | |@LB@ 58 36@LB@@LB@@LB@Energy -9.33 kcal/mol@LB@Hybridization Energy -18.4137 kcal/mol@LB@Unfolding Energy - mRNA 5.85817 kcal/mol@LB@Unfolding Energy - sRNA 3.2267 kcal/mol@LB@@LB@Position - mRNA 67 -- 86@LB@Position - sRNA 37 -- 57@LB@Position Seed - mRNA 77 -- 83@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 68 |
0.00588 |
0.2905 |
b4222 |
ytfP |
-12.04 |
0.087961 |
130 -- 151 |
48 -- 68 |
GGCT-like protein |
|
_____________129____________________152\n_____________|______________________|\n5'-ACC...UGCCU___CU___U________C____CUGGU...ACC-3'\n______________AAG__AUA_CUGGAAGC_GUGU\n______________|||__|||_||||||||_:|||\n______________UUC__UAU_GACCUUCG_UACA\n3'-UUU...ACCGA___AU____________U____CUCGU...GCG-5'\n_____________|______________________|\n_____________69_____________________47\n |
140 -- 146 |
53 -- 59 |
-18.8807 kcal/mol |
3.81035 kcal/mol |
3.03052 kcal/mol |
129 152@LB@ | |@LB@5'-ACC...UGCCU CU U C CUGGU...ACC-3'@LB@ AAG AUA CUGGAAGC GUGU@LB@ ||| ||| |||||||| :|||@LB@ UUC UAU GACCUUCG UACA@LB@3'-UUU...ACCGA AU U CUCGU...GCG-5'@LB@ | |@LB@ 69 47@LB@@LB@@LB@Energy -12.04 kcal/mol@LB@Hybridization Energy -18.8807 kcal/mol@LB@Unfolding Energy - mRNA 3.81035 kcal/mol@LB@Unfolding Energy - sRNA 3.03052 kcal/mol@LB@@LB@Position - mRNA 130 -- 151@LB@Position - sRNA 48 -- 68@LB@Position Seed - mRNA 140 -- 146@LB@Position Seed - sRNA 53 -- 59@LB@ |
| 34 |
0.003032 |
0.2776 |
b3928 |
zapB |
-12.77 |
0.066459 |
230 -- 240 |
51 -- 61 |
FtsZ stabilizer septal ring assembly factor cell division stimulator |
|
_____________229_________241\n_____________|___________|\n5'-UUU...GAGAA___________AAGUA...AAG-3'\n______________ACUGGAAGCAA\n______________|||||||||||\n______________UGACCUUCGUU\n3'-UUU...CAUUA___________ACACU...GCG-5'\n_____________|___________|\n_____________62__________50\n |
234 -- 240 |
51 -- 57 |
-17.959 kcal/mol |
2.30162 kcal/mol |
2.8896 kcal/mol |
229 241@LB@ | |@LB@5'-UUU...GAGAA AAGUA...AAG-3'@LB@ ACUGGAAGCAA@LB@ |||||||||||@LB@ UGACCUUCGUU@LB@3'-UUU...CAUUA ACACU...GCG-5'@LB@ | |@LB@ 62 50@LB@@LB@@LB@Energy -12.77 kcal/mol@LB@Hybridization Energy -17.959 kcal/mol@LB@Unfolding Energy - mRNA 2.30162 kcal/mol@LB@Unfolding Energy - sRNA 2.8896 kcal/mol@LB@@LB@Position - mRNA 230 -- 240@LB@Position - sRNA 51 -- 61@LB@Position Seed - mRNA 234 -- 240@LB@Position Seed - sRNA 51 -- 57@LB@ |
