| 7 |
0.0003168 |
0.1521 |
b0894 |
dmsA |
-18.01 |
0.008378 |
163 -- 184 |
42 -- 62 |
dimethyl sulfoxide reductase anaerobic subunit A |
b1588 b1587 |
_____________162____________________185\n_____________|______________________|\n5'-CUU...UUUGU________U____C________GCUUG...GCG-3'\n______________UACUGGAA_CAAU_GUGAGCAA\n______________||||||||_||||_||||||||\n______________AUGACCUU_GUUA_CACUCGUU\n3'-UUU...UCAUU________C_____________ACAGC...GCG-5'\n_____________|______________________|\n_____________63_____________________41\n |
178 -- 184 |
42 -- 48 |
-26.0413 kcal/mol |
4.73109 kcal/mol |
3.30151 kcal/mol |
162 185@LB@ | |@LB@5'-CUU...UUUGU U C GCUUG...GCG-3'@LB@ UACUGGAA CAAU GUGAGCAA@LB@ |||||||| |||| ||||||||@LB@ AUGACCUU GUUA CACUCGUU@LB@3'-UUU...UCAUU C ACAGC...GCG-5'@LB@ | |@LB@ 63 41@LB@@LB@@LB@Energy -18.01 kcal/mol@LB@Hybridization Energy -26.0413 kcal/mol@LB@Unfolding Energy - mRNA 4.73109 kcal/mol@LB@Unfolding Energy - sRNA 3.30151 kcal/mol@LB@@LB@Position - mRNA 163 -- 184@LB@Position - sRNA 42 -- 62@LB@Position Seed - mRNA 178 -- 184@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 106 |
0.01088 |
0.3447 |
b3543 |
dppB |
-11.69 |
0.100651 |
144 -- 153 |
41 -- 50 |
dipeptide/heme ABC transporter permease |
|
_____________143________154\n_____________|__________|\n5'-CGG...UGAUU__________ACAGA...AUC-3'\n______________UGUGAGCAAU\n______________||||||||||\n______________ACACUCGUUA\n3'-UUU...UCGUU__________CAGCA...GCG-5'\n_____________|__________|\n_____________51_________40\n |
147 -- 153 |
41 -- 47 |
-14.8509 kcal/mol |
2.00067 kcal/mol |
1.16388 kcal/mol |
143 154@LB@ | |@LB@5'-CGG...UGAUU ACAGA...AUC-3'@LB@ UGUGAGCAAU@LB@ ||||||||||@LB@ ACACUCGUUA@LB@3'-UUU...UCGUU CAGCA...GCG-5'@LB@ | |@LB@ 51 40@LB@@LB@@LB@Energy -11.69 kcal/mol@LB@Hybridization Energy -14.8509 kcal/mol@LB@Unfolding Energy - mRNA 2.00067 kcal/mol@LB@Unfolding Energy - sRNA 1.16388 kcal/mol@LB@@LB@Position - mRNA 144 -- 153@LB@Position - sRNA 41 -- 50@LB@Position Seed - mRNA 147 -- 153@LB@Position Seed - sRNA 41 -- 47@LB@ |
| 177 |
0.02193 |
0.4113 |
b4136 |
dsbD |
-10.49 |
0.157561 |
37 -- 60 |
42 -- 62 |
thiol:disulfide interchange protein and activator of DsbC |
|
_____________36_______________________61\n_____________|________________________|\n5'-UGC...UCUAU_______AA_____GCUG______GAAUA...CGG-3'\n______________UACUGGG__GGUAA____GAGCAA\n______________||||||:__:|:||____||||||\n______________AUGACCU__UCGUU____CUCGUU\n3'-UUU...UCAUU______________ACA_______ACAGC...GCG-5'\n_____________|________________________|\n_____________63_______________________41\n |
37 -- 43 |
56 -- 62 |
-20.3754 kcal/mol |
6.58529 kcal/mol |
3.30151 kcal/mol |
36 61@LB@ | |@LB@5'-UGC...UCUAU AA GCUG GAAUA...CGG-3'@LB@ UACUGGG GGUAA GAGCAA@LB@ ||||||: :|:|| ||||||@LB@ AUGACCU UCGUU CUCGUU@LB@3'-UUU...UCAUU ACA ACAGC...GCG-5'@LB@ | |@LB@ 63 41@LB@@LB@@LB@Energy -10.49 kcal/mol@LB@Hybridization Energy -20.3754 kcal/mol@LB@Unfolding Energy - mRNA 6.58529 kcal/mol@LB@Unfolding Energy - sRNA 3.30151 kcal/mol@LB@@LB@Position - mRNA 37 -- 60@LB@Position - sRNA 42 -- 62@LB@Position Seed - mRNA 37 -- 43@LB@Position Seed - sRNA 56 -- 62@LB@ |
| 185 |
0.02285 |
0.4113 |
b0920 |
elyC |
-11.60 |
0.104081 |
77 -- 89 |
66 -- 78 |
envelope biogenesis factor; DUF218 superfamily protein |
|
_____________76____________90\n_____________|_____________|\n5'-UUG...CUCCA_____________ACGUU...GCC-3'\n______________CCGGUUGGCUAAG\n______________||||:||||||||\n______________GGCCGACCGAUUC\n3'-UUU...UCGUG_____________AUUAU...GCG-5'\n_____________|_____________|\n_____________79____________65\n |
83 -- 89 |
66 -- 72 |
-24.3939 kcal/mol |
5.56302 kcal/mol |
7.23276 kcal/mol |
76 90@LB@ | |@LB@5'-UUG...CUCCA ACGUU...GCC-3'@LB@ CCGGUUGGCUAAG@LB@ ||||:||||||||@LB@ GGCCGACCGAUUC@LB@3'-UUU...UCGUG AUUAU...GCG-5'@LB@ | |@LB@ 79 65@LB@@LB@@LB@Energy -11.60 kcal/mol@LB@Hybridization Energy -24.3939 kcal/mol@LB@Unfolding Energy - mRNA 5.56302 kcal/mol@LB@Unfolding Energy - sRNA 7.23276 kcal/mol@LB@@LB@Position - mRNA 77 -- 89@LB@Position - sRNA 66 -- 78@LB@Position Seed - mRNA 83 -- 89@LB@Position Seed - sRNA 66 -- 72@LB@ |
| 200 |
0.02516 |
0.4226 |
b2566 |
era |
-10.17 |
0.177109 |
195 -- 210 |
37 -- 61 |
membrane-associated 16S rRNA-binding GTPase |
|
_____________194_______________________211\n_____________|_________________________|\n5'-UUG...CUGGA_________________________AUAAA...UCU-3'\n______________GCUGGAA______UGAGCA___UCG\n______________:||||||______||||||___|||\n______________UGACCUU______ACUCGU___AGC\n3'-UUU...CAUUA_______CGUUAC______UAC___ACGAA...GCG-5'\n_____________|_________________________|\n_____________62________________________36\n |
195 -- 201 |
55 -- 61 |
-17.979 kcal/mol |
4.50899 kcal/mol |
3.30158 kcal/mol |
194 211@LB@ | |@LB@5'-UUG...CUGGA AUAAA...UCU-3'@LB@ GCUGGAA UGAGCA UCG@LB@ :|||||| |||||| |||@LB@ UGACCUU ACUCGU AGC@LB@3'-UUU...CAUUA CGUUAC UAC ACGAA...GCG-5'@LB@ | |@LB@ 62 36@LB@@LB@@LB@Energy -10.17 kcal/mol@LB@Hybridization Energy -17.979 kcal/mol@LB@Unfolding Energy - mRNA 4.50899 kcal/mol@LB@Unfolding Energy - sRNA 3.30158 kcal/mol@LB@@LB@Position - mRNA 195 -- 210@LB@Position - sRNA 37 -- 61@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 55 -- 61@LB@ |
| 58 |
0.00551 |
0.2905 |
b0156 |
erpA |
-13.52 |
0.049632 |
189 -- 214 |
36 -- 60 |
iron-sulfur cluster insertion protein |
|
_____________188_________________________215\n_____________|___________________________|\n5'-UAG...GUCGU__________AAUA_________A___AGCAC...UAC-3'\n______________UUGG_AGCAA____UGAGUGAUG_CGU\n______________:|||_|||||____||||::|||_|||\n______________GACC_UCGUU____ACUCGUUAC_GCA\n3'-UUU...AUUAU____U_____AC___________A___CGAAA...GCG-5'\n_____________|___________________________|\n_____________61__________________________35\n |
204 -- 210 |
40 -- 46 |
-21.0837 kcal/mol |
4.26473 kcal/mol |
3.30077 kcal/mol |
188 215@LB@ | |@LB@5'-UAG...GUCGU AAUA A AGCAC...UAC-3'@LB@ UUGG AGCAA UGAGUGAUG CGU@LB@ :||| ||||| ||||::||| |||@LB@ GACC UCGUU ACUCGUUAC GCA@LB@3'-UUU...AUUAU U AC A CGAAA...GCG-5'@LB@ | |@LB@ 61 35@LB@@LB@@LB@Energy -13.52 kcal/mol@LB@Hybridization Energy -21.0837 kcal/mol@LB@Unfolding Energy - mRNA 4.26473 kcal/mol@LB@Unfolding Energy - sRNA 3.30077 kcal/mol@LB@@LB@Position - mRNA 189 -- 214@LB@Position - sRNA 36 -- 60@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 189 |
0.02313 |
0.4113 |
b2438 |
eutK |
-12.08 |
0.086588 |
220 -- 243 |
37 -- 62 |
putative ethanol utilization carboxysome structural protein |
|
_____________219________________________244\n_____________|__________________________|\n5'-CGA...GGGAU____________AC______UG____CCGCG...GUC-3'\n______________UGCUGGAAGUGG____GGCA__GUCG\n______________|:|||||||:::____:|||__||||\n______________AUGACCUUCGUU____UCGU__CAGC\n3'-UUU...UCAUU____________ACAC____UA____ACGAA...GCG-5'\n_____________|__________________________|\n_____________63_________________________36\n |
224 -- 230 |
52 -- 58 |
-25.7957 kcal/mol |
10.4122 kcal/mol |
3.3026 kcal/mol |
219 244@LB@ | |@LB@5'-CGA...GGGAU AC UG CCGCG...GUC-3'@LB@ UGCUGGAAGUGG GGCA GUCG@LB@ |:|||||||::: :||| ||||@LB@ AUGACCUUCGUU UCGU CAGC@LB@3'-UUU...UCAUU ACAC UA ACGAA...GCG-5'@LB@ | |@LB@ 63 36@LB@@LB@@LB@Energy -12.08 kcal/mol@LB@Hybridization Energy -25.7957 kcal/mol@LB@Unfolding Energy - mRNA 10.4122 kcal/mol@LB@Unfolding Energy - sRNA 3.3026 kcal/mol@LB@@LB@Position - mRNA 220 -- 243@LB@Position - sRNA 37 -- 62@LB@Position Seed - mRNA 224 -- 230@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 105 |
0.01075 |
0.3439 |
b2457 |
eutM |
-13.65 |
0.047053 |
202 -- 241 |
1 -- 59 |
ethanolamine utilization protein putative carboxysome structural protein |
|
_____________201__________________________________________________________242\n_____________|____________________________________________________________|\n5'-UAU...CACAA________UU_____G____A___AAA_________________________________ACUGA...UUA-3'\n______________UGGAAGCA_____AG_AAUG_UCG______________CC_CGGGG_____CCUGGUUGC\n______________||||||||_____||_||||_|||______________||_||:||_____||||:|:||\n______________ACCUUCGU_____UC_UUAC_AGC______________GG_GCUCC_____GGACUAGCG\n3'-UUU...UUAUG________UACAC__G________ACGAAAGUCCAAGA__C_____CAGAA_________-5'\n_____________|___________________________________________________________|\n_____________60__________________________________________________________1\n |
235 -- 241 |
1 -- 7 |
-38.4359 kcal/mol |
10.6717 kcal/mol |
14.1095 kcal/mol |
201 242@LB@ | |@LB@5'-UAU...CACAA UU G A AAA ACUGA...UUA-3'@LB@ UGGAAGCA AG AAUG UCG CC CGGGG CCUGGUUGC@LB@ |||||||| || |||| ||| || ||:|| ||||:|:||@LB@ ACCUUCGU UC UUAC AGC GG GCUCC GGACUAGCG@LB@3'-UUU...UUAUG UACAC G ACGAAAGUCCAAGA C CAGAA -5'@LB@ | |@LB@ 60 1@LB@@LB@@LB@Energy -13.65 kcal/mol@LB@Hybridization Energy -38.4359 kcal/mol@LB@Unfolding Energy - mRNA 10.6717 kcal/mol@LB@Unfolding Energy - sRNA 14.1095 kcal/mol@LB@@LB@Position - mRNA 202 -- 241@LB@Position - sRNA 1 -- 59@LB@Position Seed - mRNA 235 -- 241@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 64 |
0.005632 |
0.2905 |
b3005 |
exbD |
-12.96 |
0.061586 |
76 -- 96 |
37 -- 56 |
membrane spanning protein in TonB-ExbB-ExbD complex |
|
_____________75____________________97\n_____________|_____________________|\n5'-CGG...CUUUA________C____________CAGCG...UCU-3'\n______________AAGCGAUG_UGGGUGAUGUUG\n______________||||:|||_||:|::||||:|\n______________UUCGUUAC_ACUCGUUACAGC\n3'-UUU...UGACC_____________________ACGAA...GCG-5'\n_____________|_____________________|\n_____________57____________________36\n |
90 -- 96 |
37 -- 43 |
-25.0811 kcal/mol |
8.89195 kcal/mol |
3.22494 kcal/mol |
75 97@LB@ | |@LB@5'-CGG...CUUUA C CAGCG...UCU-3'@LB@ AAGCGAUG UGGGUGAUGUUG@LB@ ||||:||| ||:|::||||:|@LB@ UUCGUUAC ACUCGUUACAGC@LB@3'-UUU...UGACC ACGAA...GCG-5'@LB@ | |@LB@ 57 36@LB@@LB@@LB@Energy -12.96 kcal/mol@LB@Hybridization Energy -25.0811 kcal/mol@LB@Unfolding Energy - mRNA 8.89195 kcal/mol@LB@Unfolding Energy - sRNA 3.22494 kcal/mol@LB@@LB@Position - mRNA 76 -- 96@LB@Position - sRNA 37 -- 56@LB@Position Seed - mRNA 90 -- 96@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 16 |
0.00116 |
0.2406 |
b0221 |
fadE |
-14.73 |
0.030789 |
87 -- 104 |
36 -- 53 |
acyl coenzyme A dehydrogenase |
|
_____________86_________________105\n_____________|__________________|\n5'-GUG...AGCAA__________UU______AAUUA...GGA-3'\n______________CAAUGUGAGC__UGUUGU\n______________||||||||||__|||:||\n______________GUUACACUCG__ACAGCA\n3'-UUU...CCUUC__________UU______CGAAA...GCG-5'\n_____________|__________________|\n_____________54_________________35\n |
90 -- 96 |
44 -- 50 |
-23.2381 kcal/mol |
5.2956 kcal/mol |
3.20883 kcal/mol |
86 105@LB@ | |@LB@5'-GUG...AGCAA UU AAUUA...GGA-3'@LB@ CAAUGUGAGC UGUUGU@LB@ |||||||||| |||:||@LB@ GUUACACUCG ACAGCA@LB@3'-UUU...CCUUC UU CGAAA...GCG-5'@LB@ | |@LB@ 54 35@LB@@LB@@LB@Energy -14.73 kcal/mol@LB@Hybridization Energy -23.2381 kcal/mol@LB@Unfolding Energy - mRNA 5.2956 kcal/mol@LB@Unfolding Energy - sRNA 3.20883 kcal/mol@LB@@LB@Position - mRNA 87 -- 104@LB@Position - sRNA 36 -- 53@LB@Position Seed - mRNA 90 -- 96@LB@Position Seed - sRNA 44 -- 50@LB@ |
