| 172 |
0.02103 |
0.4072 |
b2043 |
wcaM |
-13.25 |
0.055075 |
7 -- 38 |
49 -- 84 |
colanic acid biosynthesis protein |
|
_____________6_____________________________________39\n_____________|_____________________________________|\n_____5'-GGCUGA__A__________________C_____A_________CUCGC...AAA-3'\n______________CA__AUCCGGCUGGCU_GGUG___CUG_GAA_CGAUG\n______________||__|:||||||||||_:||:___|||_|||_|:|||\n______________GU__UGGGCCGACCGA_UCAU___GAC_CUU_GUUAC\n_____3'-UUUUCG__CG____________U____UAU_______C_____ACUCG...GCG-5'\n_____________|_____________________________________|\n_____________85____________________________________48\n |
15 -- 21 |
69 -- 75 |
-36.8983 kcal/mol |
9.08712 kcal/mol |
14.5597 kcal/mol |
6 39@LB@ | |@LB@ 5'-GGCUGA A C A CUCGC...AAA-3'@LB@ CA AUCCGGCUGGCU GGUG CUG GAA CGAUG@LB@ || |:|||||||||| :||: ||| ||| |:|||@LB@ GU UGGGCCGACCGA UCAU GAC CUU GUUAC@LB@ 3'-UUUUCG CG U UAU C ACUCG...GCG-5'@LB@ | |@LB@ 85 48@LB@@LB@@LB@Energy -13.25 kcal/mol@LB@Hybridization Energy -36.8983 kcal/mol@LB@Unfolding Energy - mRNA 9.08712 kcal/mol@LB@Unfolding Energy - sRNA 14.5597 kcal/mol@LB@@LB@Position - mRNA 7 -- 38@LB@Position - sRNA 49 -- 84@LB@Position Seed - mRNA 15 -- 21@LB@Position Seed - sRNA 69 -- 75@LB@ |
| 199 |
0.02505 |
0.4226 |
b3794 |
wecG |
-14.56 |
0.032964 |
62 -- 86 |
1 -- 25 |
UDP-N-acetyl-D-mannosaminuronic acid transferase |
|
_____________61_________________________87\n_____________|__________________________|\n5'-UUC...GUUUG____A____U__________U_____GGUCU...ACG-3'\n______________UCUC_CGCG__GGUCUUUUU_AUCGU\n______________||||_||||__||||||::|_||||:\n______________AGAG_GCGC__CCAGAAGGA_UAGCG\n3'-UUU...GUCCA_________UC_________C_____-5'\n_____________|_________________________|\n_____________26________________________1\n |
74 -- 80 |
7 -- 13 |
-28.4933 kcal/mol |
6.21356 kcal/mol |
7.71912 kcal/mol |
61 87@LB@ | |@LB@5'-UUC...GUUUG A U U GGUCU...ACG-3'@LB@ UCUC CGCG GGUCUUUUU AUCGU@LB@ |||| |||| ||||||::| ||||:@LB@ AGAG GCGC CCAGAAGGA UAGCG@LB@3'-UUU...GUCCA UC C -5'@LB@ | |@LB@ 26 1@LB@@LB@@LB@Energy -14.56 kcal/mol@LB@Hybridization Energy -28.4933 kcal/mol@LB@Unfolding Energy - mRNA 6.21356 kcal/mol@LB@Unfolding Energy - sRNA 7.71912 kcal/mol@LB@@LB@Position - mRNA 62 -- 86@LB@Position - sRNA 1 -- 25@LB@Position Seed - mRNA 74 -- 80@LB@Position Seed - sRNA 7 -- 13@LB@ |
| 92 |
0.009626 |
0.3393 |
b3811 |
xerC |
-15.13 |
0.026359 |
57 -- 92 |
33 -- 64 |
site-specific tyrosine recombinase |
|
_____________56___________________________________93\n_____________|____________________________________|\n5'-CCA...AUGUC______G__________C___UUUG___________GUUUA...UUG-3'\n______________GAUGCU_GGAAGCGAUG_UGA____GGUGUCGUGCU\n______________:||:||_||||||:|||_|||____::|||||||||\n______________UUAUGA_CCUUCGUUAC_ACU____UUACAGCACGA\n3'-UUU...AUUCA_____________________CG_____________AAGUC...GCG-5'\n_____________|____________________________________|\n_____________65___________________________________32\n |
83 -- 89 |
36 -- 42 |
-41.1335 kcal/mol |
19.2369 kcal/mol |
6.76965 kcal/mol |
56 93@LB@ | |@LB@5'-CCA...AUGUC G C UUUG GUUUA...UUG-3'@LB@ GAUGCU GGAAGCGAUG UGA GGUGUCGUGCU@LB@ :||:|| ||||||:||| ||| ::|||||||||@LB@ UUAUGA CCUUCGUUAC ACU UUACAGCACGA@LB@3'-UUU...AUUCA CG AAGUC...GCG-5'@LB@ | |@LB@ 65 32@LB@@LB@@LB@Energy -15.13 kcal/mol@LB@Hybridization Energy -41.1335 kcal/mol@LB@Unfolding Energy - mRNA 19.2369 kcal/mol@LB@Unfolding Energy - sRNA 6.76965 kcal/mol@LB@@LB@Position - mRNA 57 -- 92@LB@Position - sRNA 33 -- 64@LB@Position Seed - mRNA 83 -- 89@LB@Position Seed - sRNA 36 -- 42@LB@ |
| 120 |
0.0128 |
0.3585 |
b0445 |
ybaE |
-11.02 |
0.129416 |
154 -- 176 |
41 -- 63 |
putative ABC transporter periplasmic binding protein |
|
_____________153______________________177\n_____________|________________________|\n5'-CGU...GAUAU______________A____A____UAAAU...GUU-3'\n______________AUAC_GGAAGUAAU_GUGA_UAGU\n______________||||_|||||:|||_||||_:|:|\n______________UAUG_CCUUCGUUA_CACU_GUUA\n3'-UUU...UUCAU____A______________C____CAGCA...GCG-5'\n_____________|________________________|\n_____________64_______________________40\n |
159 -- 165 |
51 -- 57 |
-19.1991 kcal/mol |
4.87781 kcal/mol |
3.30177 kcal/mol |
153 177@LB@ | |@LB@5'-CGU...GAUAU A A UAAAU...GUU-3'@LB@ AUAC GGAAGUAAU GUGA UAGU@LB@ |||| |||||:||| |||| :|:|@LB@ UAUG CCUUCGUUA CACU GUUA@LB@3'-UUU...UUCAU A C CAGCA...GCG-5'@LB@ | |@LB@ 64 40@LB@@LB@@LB@Energy -11.02 kcal/mol@LB@Hybridization Energy -19.1991 kcal/mol@LB@Unfolding Energy - mRNA 4.87781 kcal/mol@LB@Unfolding Energy - sRNA 3.30177 kcal/mol@LB@@LB@Position - mRNA 154 -- 176@LB@Position - sRNA 41 -- 63@LB@Position Seed - mRNA 159 -- 165@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 116 |
0.01242 |
0.3585 |
b0468 |
ybaN |
-14.97 |
0.028033 |
230 -- 260 |
44 -- 78 |
DUF454 family inner membrane protein |
|
_____________229___________________________________261\n_____________|_____________________________________|\n5'-GUC...AUUGG_______________________UAC___________GUGGU...UGC-3'\n______________CUGGCUGGC__GGUAGUGCUGGG___GC____UGGGC\n______________|:|||||||__:|||:|:||||:___||____||:||\n______________GGCCGACCG__UCAUUAUGACCU___CG____ACUCG\n3'-UUU...UCGUG_________AU____________U____UUAC_____UUACA...GCG-5'\n_____________|_____________________________________|\n_____________79____________________________________43\n |
244 -- 250 |
56 -- 62 |
-40.2392 kcal/mol |
12.5705 kcal/mol |
12.6976 kcal/mol |
229 261@LB@ | |@LB@5'-GUC...AUUGG UAC GUGGU...UGC-3'@LB@ CUGGCUGGC GGUAGUGCUGGG GC UGGGC@LB@ |:||||||| :|||:|:||||: || ||:||@LB@ GGCCGACCG UCAUUAUGACCU CG ACUCG@LB@3'-UUU...UCGUG AU U UUAC UUACA...GCG-5'@LB@ | |@LB@ 79 43@LB@@LB@@LB@Energy -14.97 kcal/mol@LB@Hybridization Energy -40.2392 kcal/mol@LB@Unfolding Energy - mRNA 12.5705 kcal/mol@LB@Unfolding Energy - sRNA 12.6976 kcal/mol@LB@@LB@Position - mRNA 230 -- 260@LB@Position - sRNA 44 -- 78@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 56 -- 62@LB@ |
| 111 |
0.01184 |
0.3513 |
b0528 |
ybcJ |
-13.49 |
0.050278 |
257 -- 272 |
44 -- 61 |
ribosome-associated protein; putative RNA-binding protein |
|
_____________256________________273\n_____________|__________________|\n5'-AGG...CUGAA________GC________GAAAG...CGA-3'\n______________ACUGGAAG___UG_GAGC\n______________||||||||___||_||||\n______________UGACCUUC___AC_CUCG\n3'-UUU...CAUUA________GUU__A____UUACA...GCG-5'\n_____________|__________________|\n_____________62_________________43\n |
258 -- 264 |
54 -- 60 |
-19.8617 kcal/mol |
3.07726 kcal/mol |
3.29941 kcal/mol |
256 273@LB@ | |@LB@5'-AGG...CUGAA GC GAAAG...CGA-3'@LB@ ACUGGAAG UG GAGC@LB@ |||||||| || ||||@LB@ UGACCUUC AC CUCG@LB@3'-UUU...CAUUA GUU A UUACA...GCG-5'@LB@ | |@LB@ 62 43@LB@@LB@@LB@Energy -13.49 kcal/mol@LB@Hybridization Energy -19.8617 kcal/mol@LB@Unfolding Energy - mRNA 3.07726 kcal/mol@LB@Unfolding Energy - sRNA 3.29941 kcal/mol@LB@@LB@Position - mRNA 257 -- 272@LB@Position - sRNA 44 -- 61@LB@Position Seed - mRNA 258 -- 264@LB@Position Seed - sRNA 54 -- 60@LB@ |
| 191 |
0.0243 |
0.4226 |
b4511 |
ybdZ |
-10.65 |
0.148355 |
2 -- 30 |
16 -- 45 |
stimulator of EntF adenylation activity MbtH-like |
|
_____________1_________________________________31\n_____________|_________________________________|\n__________5'-C_____________GGAAG_____A_________CCGAU...UAC-3'\n______________GCA___UUGUGCU_____CGGGU__UUCGCGAG\n______________|||___|:|||||_____|:|||__|:||||||\n______________CGU___AGCACGA_____GUCCA__AGGCGCUC\n3'-UUU...ACACU___UAC_______AA________AG________CCAGA...GCG-5'\n_____________|_________________________________|\n_____________46________________________________15\n |
24 -- 30 |
16 -- 22 |
-30.8687 kcal/mol |
10.0459 kcal/mol |
10.1709 kcal/mol |
1 31@LB@ | |@LB@ 5'-C GGAAG A CCGAU...UAC-3'@LB@ GCA UUGUGCU CGGGU UUCGCGAG@LB@ ||| |:||||| |:||| |:||||||@LB@ CGU AGCACGA GUCCA AGGCGCUC@LB@3'-UUU...ACACU UAC AA AG CCAGA...GCG-5'@LB@ | |@LB@ 46 15@LB@@LB@@LB@Energy -10.65 kcal/mol@LB@Hybridization Energy -30.8687 kcal/mol@LB@Unfolding Energy - mRNA 10.0459 kcal/mol@LB@Unfolding Energy - sRNA 10.1709 kcal/mol@LB@@LB@Position - mRNA 2 -- 30@LB@Position - sRNA 16 -- 45@LB@Position Seed - mRNA 24 -- 30@LB@Position Seed - sRNA 16 -- 22@LB@ |
| 50 |
0.004678 |
0.2905 |
b0906 |
ycaP |
-14.80 |
0.029952 |
1 -- 24 |
40 -- 67 |
UPF0702 family putative inner membrane protein |
|
______________1____________________________25\n______________|____________________________|\n___________5'-___UUU_______________________GAAUC...UCU-3'\n______________AGU___UGCUGGAAGC_____GAGCGAUG\n______________|||___|:||||||||_____||||:|||\n______________UCA___AUGACCUUCG_____CUCGUUAC\n3'-UUU...CCGAU___UU___________UUACA________AGCAC...GCG-5'\n_____________|_____________________________|\n_____________68____________________________39\n |
18 -- 24 |
40 -- 46 |
-27.5061 kcal/mol |
9.39751 kcal/mol |
3.30504 kcal/mol |
1 25@LB@ | |@LB@ 5'- UUU GAAUC...UCU-3'@LB@ AGU UGCUGGAAGC GAGCGAUG@LB@ ||| |:|||||||| ||||:|||@LB@ UCA AUGACCUUCG CUCGUUAC@LB@3'-UUU...CCGAU UU UUACA AGCAC...GCG-5'@LB@ | |@LB@ 68 39@LB@@LB@@LB@Energy -14.80 kcal/mol@LB@Hybridization Energy -27.5061 kcal/mol@LB@Unfolding Energy - mRNA 9.39751 kcal/mol@LB@Unfolding Energy - sRNA 3.30504 kcal/mol@LB@@LB@Position - mRNA 1 -- 24@LB@Position - sRNA 40 -- 67@LB@Position Seed - mRNA 18 -- 24@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 26 |
0.002118 |
0.2692 |
b1181 |
ycgN |
-20.05 |
0.003709 |
218 -- 269 |
37 -- 88 |
UPF0153 family cysteine cluster protein |
|
_____________217_____________________________________________________270\n_____________|_______________________________________________________|\n5'-UUU...CUGAU____G_U______UU_____A______AACC__________AA____________GAAUG...GUC-3'\n______________GAGC_A_GUACCU__CUGGC_AAGUAA____CUGGA__CGA__UGAGCGAUG_CG\n______________:|||_|_|:|||:__|||||_||||||____|||||__|:|__|||||:|||_||\n______________UUCG_U_CGUGGG__GACCG_UUCAUU____GACCU__GUU__ACUCGUUAC_GC\n_________3'-UU____G________CC_____A______AU_______UC___AC_________A__ACGAA...GCG-5'\n_____________|_______________________________________________________|\n_____________89______________________________________________________36\n |
261 -- 267 |
40 -- 46 |
-50.5987 kcal/mol |
15.641 kcal/mol |
14.9108 kcal/mol |
217 270@LB@ | |@LB@5'-UUU...CUGAU G U UU A AACC AA GAAUG...GUC-3'@LB@ GAGC A GUACCU CUGGC AAGUAA CUGGA CGA UGAGCGAUG CG@LB@ :||| | |:|||: ||||| |||||| ||||| |:| |||||:||| ||@LB@ UUCG U CGUGGG GACCG UUCAUU GACCU GUU ACUCGUUAC GC@LB@ 3'-UU G CC A AU UC AC A ACGAA...GCG-5'@LB@ | |@LB@ 89 36@LB@@LB@@LB@Energy -20.05 kcal/mol@LB@Hybridization Energy -50.5987 kcal/mol@LB@Unfolding Energy - mRNA 15.641 kcal/mol@LB@Unfolding Energy - sRNA 14.9108 kcal/mol@LB@@LB@Position - mRNA 218 -- 269@LB@Position - sRNA 37 -- 88@LB@Position Seed - mRNA 261 -- 267@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 160 |
0.02006 |
0.4072 |
b1205 |
ychH |
-13.92 |
0.042333 |
252 -- 283 |
22 -- 60 |
DUF2583 family putative inner membrane protein |
|
_____________251_____________________________________284\n_____________|_______________________________________|\n5'-CAA...UGGGU____U____________G_________G__G____A___AAUCC...UAC-3'\n______________CUGG_GGUAAUG___GU___GUCG_GC__U_GGGU_UUC\n______________||||_:|:||||___|:___||||_||__|_:|||_:||\n______________GACC_UCGUUAC___CG___CAGC_CG__A_UCCA_GAG\n3'-UUU...AUUAU____U_______ACU__UUA____A__AA_G____A___GCGCU...GCG-5'\n_____________|_______________________________________|\n_____________61______________________________________21\n |
257 -- 263 |
49 -- 55 |
-28.0186 kcal/mol |
6.10632 kcal/mol |
7.98777 kcal/mol |
251 284@LB@ | |@LB@5'-CAA...UGGGU U G G G A AAUCC...UAC-3'@LB@ CUGG GGUAAUG GU GUCG GC U GGGU UUC@LB@ |||| :|:|||| |: |||| || | :||| :||@LB@ GACC UCGUUAC CG CAGC CG A UCCA GAG@LB@3'-UUU...AUUAU U ACU UUA A AA G A GCGCU...GCG-5'@LB@ | |@LB@ 61 21@LB@@LB@@LB@Energy -13.92 kcal/mol@LB@Hybridization Energy -28.0186 kcal/mol@LB@Unfolding Energy - mRNA 6.10632 kcal/mol@LB@Unfolding Energy - sRNA 7.98777 kcal/mol@LB@@LB@Position - mRNA 252 -- 283@LB@Position - sRNA 22 -- 60@LB@Position Seed - mRNA 257 -- 263@LB@Position Seed - sRNA 49 -- 55@LB@ |
