| 45 |
0.00394 |
0.2905 |
b4551 |
yheV |
-11.41 |
0.111890 |
172 -- 193 |
40 -- 61 |
DUF2387 family putative metal-binding protein |
|
_____________171____________________194\n_____________|______________________|\n5'-AUC...GGACG_______UG___U_______A_GGUAA...UUG-3'\n______________GCUGGGA__AAU_UGAGUAG_G\n______________:||||:|__|||_||||:|:_|\n______________UGACCUU__UUA_ACUCGUU_C\n3'-UUU...CAUUA_______CG___C_______A_AGCAC...GCG-5'\n_____________|______________________|\n_____________62_____________________39\n |
185 -- 191 |
42 -- 48 |
-20.0831 kcal/mol |
5.37544 kcal/mol |
3.30075 kcal/mol |
171 194@LB@ | |@LB@5'-AUC...GGACG UG U A GGUAA...UUG-3'@LB@ GCUGGGA AAU UGAGUAG G@LB@ :||||:| ||| ||||:|: |@LB@ UGACCUU UUA ACUCGUU C@LB@3'-UUU...CAUUA CG C A AGCAC...GCG-5'@LB@ | |@LB@ 62 39@LB@@LB@@LB@Energy -11.41 kcal/mol@LB@Hybridization Energy -20.0831 kcal/mol@LB@Unfolding Energy - mRNA 5.37544 kcal/mol@LB@Unfolding Energy - sRNA 3.30075 kcal/mol@LB@@LB@Position - mRNA 172 -- 193@LB@Position - sRNA 40 -- 61@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 1 |
0 |
0 |
b3441 |
yhhY |
-117.23 |
0.000000 |
1 -- 79 |
1 -- 79 |
aminoacyl nucleotide detoxifying acetyltransferase |
|
______________1______________________________________________________________________________80\n______________|______________________________________________________________________________|\n___________5'-_______________________________________________________________________________GAGAC...UGC-3'\n______________CCCGGCUGGCUAAGUAAUACUGGAAGCAAUGUGAGCAAUGUCGUGCUUUCAGGUUCUCCGCGAGGGUCUUCCUGAUCGC\n______________|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\n______________GGGCCGACCGAUUCAUUAUGACCUUCGUUACACUCGUUACAGCACGAAAGUCCAAGAGGCGCUCCCAGAAGGACUAGCG\n3'-UUU...GUCGU_______________________________________________________________________________-5'\n_____________|______________________________________________________________________________|\n_____________80_____________________________________________________________________________1\n |
73 -- 79 |
1 -- 7 |
-169.876 kcal/mol |
26.9228 kcal/mol |
25.7255 kcal/mol |
1 80@LB@ | |@LB@ 5'- GAGAC...UGC-3'@LB@ CCCGGCUGGCUAAGUAAUACUGGAAGCAAUGUGAGCAAUGUCGUGCUUUCAGGUUCUCCGCGAGGGUCUUCCUGAUCGC@LB@ |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||@LB@ GGGCCGACCGAUUCAUUAUGACCUUCGUUACACUCGUUACAGCACGAAAGUCCAAGAGGCGCUCCCAGAAGGACUAGCG@LB@3'-UUU...GUCGU -5'@LB@ | |@LB@ 80 1@LB@@LB@@LB@Energy -117.23 kcal/mol@LB@Hybridization Energy -169.876 kcal/mol@LB@Unfolding Energy - mRNA 26.9228 kcal/mol@LB@Unfolding Energy - sRNA 25.7255 kcal/mol@LB@@LB@Position - mRNA 1 -- 79@LB@Position - sRNA 1 -- 79@LB@Position Seed - mRNA 73 -- 79@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 153 |
0.01881 |
0.4072 |
b3524 |
yhjG |
-16.11 |
0.017836 |
180 -- 208 |
42 -- 68 |
putative inner membrane-anchored periplasmic AsmA family protein |
|
_____________179____________________________209\n_____________|______________________________|\n5'-UUG...ACAGG_________GA________ACGA_______GGCAG...GAC-3'\n______________AAG_AAUAU__GGAAGCGA____UGAGCAA\n______________|||_||||:__||||||:|____|||||||\n______________UUC_UUAUG__CCUUCGUU____ACUCGUU\n3'-UUU...ACCGA___A_____A_________AC_________ACAGC...GCG-5'\n_____________|______________________________|\n_____________69_____________________________41\n |
202 -- 208 |
42 -- 48 |
-23.3114 kcal/mol |
3.89448 kcal/mol |
3.30492 kcal/mol |
179 209@LB@ | |@LB@5'-UUG...ACAGG GA ACGA GGCAG...GAC-3'@LB@ AAG AAUAU GGAAGCGA UGAGCAA@LB@ ||| ||||: ||||||:| |||||||@LB@ UUC UUAUG CCUUCGUU ACUCGUU@LB@3'-UUU...ACCGA A A AC ACAGC...GCG-5'@LB@ | |@LB@ 69 41@LB@@LB@@LB@Energy -16.11 kcal/mol@LB@Hybridization Energy -23.3114 kcal/mol@LB@Unfolding Energy - mRNA 3.89448 kcal/mol@LB@Unfolding Energy - sRNA 3.30492 kcal/mol@LB@@LB@Position - mRNA 180 -- 208@LB@Position - sRNA 42 -- 68@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 74 |
0.006788 |
0.3082 |
b3525 |
yhjH |
-16.42 |
0.015793 |
272 -- 288 |
44 -- 60 |
cyclic-di-GMP phosphodiesterase FlhDC-regulated |
|
_____________271_______________289\n_____________|_________________|\n5'-UUA...CGUUU____UU___________GUGCU...CCU-3'\n______________UUGG__GCAGUGUGAGC\n______________:|||__|||:|||||||\n______________GACC__CGUUACACUCG\n3'-UUU...AUUAU____UU___________UUACA...GCG-5'\n_____________|_________________|\n_____________61________________43\n |
279 -- 285 |
47 -- 53 |
-25.6078 kcal/mol |
5.89114 kcal/mol |
3.2985 kcal/mol |
271 289@LB@ | |@LB@5'-UUA...CGUUU UU GUGCU...CCU-3'@LB@ UUGG GCAGUGUGAGC@LB@ :||| |||:|||||||@LB@ GACC CGUUACACUCG@LB@3'-UUU...AUUAU UU UUACA...GCG-5'@LB@ | |@LB@ 61 43@LB@@LB@@LB@Energy -16.42 kcal/mol@LB@Hybridization Energy -25.6078 kcal/mol@LB@Unfolding Energy - mRNA 5.89114 kcal/mol@LB@Unfolding Energy - sRNA 3.2985 kcal/mol@LB@@LB@Position - mRNA 272 -- 288@LB@Position - sRNA 44 -- 60@LB@Position Seed - mRNA 279 -- 285@LB@Position Seed - sRNA 47 -- 53@LB@ |
| 60 |
0.005592 |
0.2905 |
b3577 |
yiaM |
-14.71 |
0.031138 |
209 -- 232 |
41 -- 64 |
2 3-diketo-L-gulonate TRAP transporter small permease protein |
|
_____________208______________________233\n_____________|________________________|\n5'-UUC...AAAAA______C________ACU______UAAUC...GCA-3'\n______________AAUACU_GAAGCAAU___GGCGAU\n______________||||||_||||||||___:||:||\n______________UUAUGA_CUUCGUUA___UCGUUA\n3'-UUU...AUUCA______C________CAC______CAGCA...GCG-5'\n_____________|________________________|\n_____________65_______________________40\n |
217 -- 223 |
50 -- 56 |
-21.6131 kcal/mol |
3.60615 kcal/mol |
3.30185 kcal/mol |
208 233@LB@ | |@LB@5'-UUC...AAAAA C ACU UAAUC...GCA-3'@LB@ AAUACU GAAGCAAU GGCGAU@LB@ |||||| |||||||| :||:||@LB@ UUAUGA CUUCGUUA UCGUUA@LB@3'-UUU...AUUCA C CAC CAGCA...GCG-5'@LB@ | |@LB@ 65 40@LB@@LB@@LB@Energy -14.71 kcal/mol@LB@Hybridization Energy -21.6131 kcal/mol@LB@Unfolding Energy - mRNA 3.60615 kcal/mol@LB@Unfolding Energy - sRNA 3.30185 kcal/mol@LB@@LB@Position - mRNA 209 -- 232@LB@Position - sRNA 41 -- 64@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 50 -- 56@LB@ |
| 59 |
0.005518 |
0.2905 |
b3663 |
yicN |
-20.80 |
0.002740 |
224 -- 256 |
26 -- 61 |
DUF1198 family protein |
|
_____________223__________________________________257\n_____________|____________________________________|\n5'-CUU...GCCAC_____C________UU__G_________________GCUGA...AUC-3'\n______________GCUGG_GGUAGUGU__GU___GUUG_GUUUUCGGGU\n______________:||||_:|:|:|||__|:___||:|_|:||||:|||\n______________UGACC_UCGUUACA__CG___CAGC_CGAAAGUCCA\n3'-UUU...CAUUA_____U________CU__UUA____A__________AGAGG...GCG-5'\n_____________|____________________________________|\n_____________62___________________________________25\n |
250 -- 256 |
26 -- 32 |
-36.0496 kcal/mol |
7.2648 kcal/mol |
7.98122 kcal/mol |
223 257@LB@ | |@LB@5'-CUU...GCCAC C UU G GCUGA...AUC-3'@LB@ GCUGG GGUAGUGU GU GUUG GUUUUCGGGU@LB@ :|||| :|:|:||| |: ||:| |:||||:|||@LB@ UGACC UCGUUACA CG CAGC CGAAAGUCCA@LB@3'-UUU...CAUUA U CU UUA A AGAGG...GCG-5'@LB@ | |@LB@ 62 25@LB@@LB@@LB@Energy -20.80 kcal/mol@LB@Hybridization Energy -36.0496 kcal/mol@LB@Unfolding Energy - mRNA 7.2648 kcal/mol@LB@Unfolding Energy - sRNA 7.98122 kcal/mol@LB@@LB@Position - mRNA 224 -- 256@LB@Position - sRNA 26 -- 61@LB@Position Seed - mRNA 250 -- 256@LB@Position Seed - sRNA 26 -- 32@LB@ |
| 151 |
0.01843 |
0.4072 |
b4028 |
yjbG |
-13.08 |
0.058794 |
282 -- 297 |
40 -- 55 |
extracellular polysaccharide export OMA protein |
|
_____________281______________298\n_____________|________________|\n5'-AAA...UGUUC_______GC_______AGG-3'\n______________AGCAAUG__AGCAGUG\n______________|||||||__||||:||\n______________UCGUUAC__UCGUUAC\n3'-UUU...GACCU_______AC_______AGCAC...GCG-5'\n_____________|________________|\n_____________56_______________39\n |
291 -- 297 |
40 -- 46 |
-18.8155 kcal/mol |
2.52344 kcal/mol |
3.20849 kcal/mol |
281 298@LB@ | |@LB@5'-AAA...UGUUC GC AGG-3'@LB@ AGCAAUG AGCAGUG@LB@ ||||||| ||||:||@LB@ UCGUUAC UCGUUAC@LB@3'-UUU...GACCU AC AGCAC...GCG-5'@LB@ | |@LB@ 56 39@LB@@LB@@LB@Energy -13.08 kcal/mol@LB@Hybridization Energy -18.8155 kcal/mol@LB@Unfolding Energy - mRNA 2.52344 kcal/mol@LB@Unfolding Energy - sRNA 3.20849 kcal/mol@LB@@LB@Position - mRNA 282 -- 297@LB@Position - sRNA 40 -- 55@LB@Position Seed - mRNA 291 -- 297@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 48 |
0.004482 |
0.2905 |
b4045 |
yjbJ |
-14.69 |
0.031336 |
242 -- 268 |
42 -- 68 |
stress-induced protein UPF0337 family |
|
_____________241___________________________269\n_____________|_____________________________|\n5'-CGU...UUUAA________G__AAA_______________ACUGA...AAG-3'\n______________AGGUAA_A_UG___GAGCAAUG_GGGCAA\n______________|:||||_|_||___:|||||||_|:||||\n______________UUCAUU_U_AC___UUCGUUAC_CUCGUU\n3'-UUU...ACCGA______A_G__C__________A______ACAGC...GCG-5'\n_____________|_____________________________|\n_____________69____________________________41\n |
256 -- 262 |
49 -- 55 |
-22.1594 kcal/mol |
4.16538 kcal/mol |
3.30492 kcal/mol |
241 269@LB@ | |@LB@5'-CGU...UUUAA G AAA ACUGA...AAG-3'@LB@ AGGUAA A UG GAGCAAUG GGGCAA@LB@ |:|||| | || :||||||| |:||||@LB@ UUCAUU U AC UUCGUUAC CUCGUU@LB@3'-UUU...ACCGA A G C A ACAGC...GCG-5'@LB@ | |@LB@ 69 41@LB@@LB@@LB@Energy -14.69 kcal/mol@LB@Hybridization Energy -22.1594 kcal/mol@LB@Unfolding Energy - mRNA 4.16538 kcal/mol@LB@Unfolding Energy - sRNA 3.30492 kcal/mol@LB@@LB@Position - mRNA 242 -- 268@LB@Position - sRNA 42 -- 68@LB@Position Seed - mRNA 256 -- 262@LB@Position Seed - sRNA 49 -- 55@LB@ |
| 178 |
0.02201 |
0.4113 |
b4176 |
yjeT |
-16.79 |
0.013635 |
217 -- 249 |
54 -- 87 |
DUF2065 family protein |
|
_____________216_________________________________250\n_____________|___________________________________|\n5'-UCA...AAUCU____________CC______U______________GUUUA...CGA-3'\n______________GGCUGGCGCUUG__CUGGUU___UGGUACUGGAAG\n______________:||::||:|::|__||||:|___|::|||||||||\n______________UCGGUCGUGGGC__GACCGA___AUUAUGACCUUC\n________3'-UUU____________C_______UUC____________GUUAC...GCG-5'\n_____________|___________________________________|\n_____________88__________________________________53\n |
243 -- 249 |
54 -- 60 |
-41.1583 kcal/mol |
10.0538 kcal/mol |
14.3172 kcal/mol |
216 250@LB@ | |@LB@5'-UCA...AAUCU CC U GUUUA...CGA-3'@LB@ GGCUGGCGCUUG CUGGUU UGGUACUGGAAG@LB@ :||::||:|::| ||||:| |::|||||||||@LB@ UCGGUCGUGGGC GACCGA AUUAUGACCUUC@LB@ 3'-UUU C UUC GUUAC...GCG-5'@LB@ | |@LB@ 88 53@LB@@LB@@LB@Energy -16.79 kcal/mol@LB@Hybridization Energy -41.1583 kcal/mol@LB@Unfolding Energy - mRNA 10.0538 kcal/mol@LB@Unfolding Energy - sRNA 14.3172 kcal/mol@LB@@LB@Position - mRNA 217 -- 249@LB@Position - sRNA 54 -- 87@LB@Position Seed - mRNA 243 -- 249@LB@Position Seed - sRNA 54 -- 60@LB@ |
| 119 |
0.01272 |
0.3585 |
b4336 |
yjiN |
-16.20 |
0.017192 |
123 -- 159 |
40 -- 86 |
zinc-type alcohol dehydrogenase-like protein |
|
_____________122_____________________________________________160\n_____________|_______________________________________________|\n5'-GGU...CGUGC_________A___A___C___C____G____________________AUUUU...CCA-3'\n______________GCCAGCAUC_GGC__GC_GAG___UA_UGGAG_______GAGCAGUG\n______________|||||||:|_|||__||_:||___||_||||:_______|||||:||\n______________CGGUCGUGG_CCG__CG_UUC___AU_ACCUU_______CUCGUUAC\n_______3'-UUUU_________G___AC__A___AUU__G_____CGUUACA________AGCAC...GCG-5'\n_____________|_______________________________________________|\n_____________87______________________________________________39\n |
153 -- 159 |
40 -- 46 |
-42.8122 kcal/mol |
11.6972 kcal/mol |
14.9104 kcal/mol |
122 160@LB@ | |@LB@5'-GGU...CGUGC A A C C G AUUUU...CCA-3'@LB@ GCCAGCAUC GGC GC GAG UA UGGAG GAGCAGUG@LB@ |||||||:| ||| || :|| || ||||: |||||:||@LB@ CGGUCGUGG CCG CG UUC AU ACCUU CUCGUUAC@LB@ 3'-UUUU G AC A AUU G CGUUACA AGCAC...GCG-5'@LB@ | |@LB@ 87 39@LB@@LB@@LB@Energy -16.20 kcal/mol@LB@Hybridization Energy -42.8122 kcal/mol@LB@Unfolding Energy - mRNA 11.6972 kcal/mol@LB@Unfolding Energy - sRNA 14.9104 kcal/mol@LB@@LB@Position - mRNA 123 -- 159@LB@Position - sRNA 40 -- 86@LB@Position Seed - mRNA 153 -- 159@LB@Position Seed - sRNA 40 -- 46@LB@ |
