Freiburg RNA Tools
CopraRNA - Results
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IFF
CopraRNA 6741848

Input and runtime details for job 6741848 (precomputed example)

Input Parameters

? sRNA sequences[.fa]
? Putative target sequences (organism of interest)[.fa]
? Extract sequences aroundstart codon
? nt up (1-300)200
? nt down (1-300)100
? Minimal rel. cluster size0.5
? Iterative organism subset analysis (beta)no

Job ID 6741848 (server version trunk)

?Job Submitted & Queued@ Mon Oct 27 19:34:26 CET 2014
?Processing Started@ Mon Oct 27 19:34:36 CET 2014
?CopraRNA Finished & Post-Processing@ Tue Oct 28 02:49:19 CET 2014
?Post-Processing Finished@ Tue Oct 28 02:49:19 CET 2014
?Job Completed@ Tue Oct 28 02:49:54 CET 2014
 DIRECT ACCESS: http://rna.informatik.uni-freiburg.de:80/RetrieveResults.jsp?jobID=6741848&toolName=CopraRNA ( 30 days expiry )

The job description you specified

SgrS

Output download complete results [zip]

Downloadable files

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heatmap

? Conserved, identified interactions for NC_000913 Escherichia coli str. K-12 substr. MG1655

Sort by selecting a column name:
Rank CopraRNA p-value CopraRNA fdr value Locus Tag Gene Name Energy [kcal/mol] IntaRNA p-value Position mRNA Position sRNA Annotation Additional homologs sampled p-values
1 0 0 b0069 sgrR -172.16 0.000000 1 -- 133 1 -- 133 transcriptional DNA-binding transcriptional activator of sgrS sRNA   0
2 5.122e-06 0.009386 b4254 argI -18.17 0.003511 62 -- 84 167 -- 185 ornithine carbamoyltransferase 1 b0273 0
3 4.629e-05 0.05655 b1101 ptsG -18.04 0.003741 173 -- 192 168 -- 187 fused glucose-specific PTS enzymes: IIB component/IIC component   0
4 0.0002284 0.2093 b3826 yigL -15.94 0.010348 114 -- 125 168 -- 179 pyridoxal phosphate phosphatase   0
5 0.0003589 0.2631 b2440 eutC -15.68 0.011708 6 -- 32 167 -- 197 ethanolamine ammonia-lyase small subunit (light chain)   0
6 0.0006786 0.4145 b3525 yhjH -11.48 0.092360 188 -- 216 151 -- 176 cyclic-di-GMP phosphodiesterase FlhDC-regulated   0
7 0.0008002 0.419 b3242 aaeX -11.40 0.096053 73 -- 81 168 -- 176 DUF1656 family putative inner membrane efflux pump associated protein   0
8 0.0009978 0.4353 b3935 priA -12.31 0.061648 174 -- 199 161 -- 186 Primosome factor n' (replication factor Y)   0
9 0.001069 0.4353 b2069 yegD -12.75 0.049568 22 -- 41 168 -- 187 Hsp70 chaperone family protein   0
10 0.002228 0.709 b3474 yhhT -14.10 0.025500 122 -- 189 169 -- 224 UPF0118 family putative transporter   0

Details of Selected Interaction Download Interaction Details

mRNA

sRNA

		

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Results are computed with CopraRNA version 2.0.1