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CopraRNA 6860187

Input and runtime details for job 6860187 (precomputed example)

Sequence input

? sRNA sequences[.fa]
? Putative target sequences (organism of interest)[.fa]
? Extract sequences aroundstart codon
? nt up (1-300)200
? nt down (1-300)100

CopraRNA parameters

? Consensus prediction off
? p-value combinationno
? p-value filtering (0=off)0

IntaRNA parameters

? Target folding window size150
? Target max. basepair distance100

Job ID 6860187 (server version trunk)

?Job Submitted & Queued@ Fri Feb 16 15:29:33 CET 2018
?CopraRNA Started@ Fri Feb 16 15:29:58 CET 2018
?CopraRNA Finished & Post-Processing@ Sat Feb 17 01:36:19 CET 2018
?Post-Processing Finished@ Sat Feb 17 01:36:26 CET 2018
?Job Completed@ Sat Feb 17 01:36:50 CET 2018
 DIRECT ACCESS: http://rna.informatik.uni-freiburg.de/RetrieveResults.jsp?jobID=6860187&toolName=CopraRNA ( 30 days expiry )

Description of the job

SgrS

Output download complete results [zip]

Downloadable files

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heatmap

? Conserved, identified interactions for NC_000913 Escherichia coli str. K-12 substr. MG1655

Sort by selecting a column name:
Rank CopraRNA p-value CopraRNA fdr value Locus Tag Gene Name Energy [kcal/mol] IntaRNA p-value Position mRNA Position sRNA Annotation Additional homologs
1 0 0 b0069 sgrR -186.00 0.000000 1 -- 133 1 -- 133 transcriptional DNA-binding transcriptional activator of sgrS sRNA  
2 4.964e-05 0.08352 b0475 hemH -12.83 0.075395 238 -- 275 45 -- 93 ferrochelatase  
3 8.668e-05 0.08442 b3892 fdoI -15.80 0.018551 255 -- 278 1 -- 22 formate dehydrogenase-O cytochrome b556 subunit  
4 0.0001068 0.08442 b2069 yegD -18.64 0.004982 22 -- 145 51 -- 187 Hsp70 chaperone family protein  
5 0.0001254 0.08442 b4481 wecF -11.27 0.155862 165 -- 206 62 -- 99 TDP-Fuc4NAc:lipidIIFuc4NAc transferase  
6 0.0003621 0.1842 b3242 aaeX -9.38 0.356280 9 -- 19 125 -- 135 DUF1656 family putative inner membrane efflux pump associated protein  
7 0.0005448 0.1842 b1912 pgsA -14.68 0.031521 247 -- 274 111 -- 134 phosphatidylglycerophosphate synthetase  
8 0.0005643 0.1842 b2557 purL -10.01 0.273478 129 -- 143 111 -- 124 phosphoribosylformyl-glycineamide synthetase  
9 0.0005653 0.1842 b3527 yhjJ -12.58 0.084694 198 -- 237 133 -- 170 putative periplasmic M16 family chaperone  
10 0.0006004 0.1842 b3656 yicI -12.42 0.091283 58 -- 101 169 -- 207 putative alpha-glucosidase  
11 0.0006963 0.1842 b1739 osmE -13.14 0.065080 250 -- 260 194 -- 204 osmotically-inducible lipoprotein  
12 0.0007005 0.1842 b1101 ptsG -16.86 0.011310 173 -- 192 168 -- 187 fused glucose-specific PTS enzymes: IIB component/IIC component  
13 0.0007116 0.1842 b3052 hldE -13.53 0.054228 111 -- 134 141 -- 169 heptose 7-phosphate kinase and heptose 1-phosphate adenyltransferase  
14 0.00083 0.1886 b2721 hycE -15.91 0.017607 169 -- 185 190 -- 205 hydrogenase 3 large subunit  
15 0.0008498 0.1886 b4254 argI -15.11 0.025648 62 -- 84 167 -- 185 ornithine carbamoyltransferase 1 b0273
16 0.0008966 0.1886 b0807 rlmF -16.29 0.014793 117 -- 160 51 -- 97 23S rRNA m(6)A1618 methyltransferase SAM-dependent  
17 0.001014 0.2007 b4032 malG -14.09 0.041561 127 -- 139 193 -- 205 maltose transporter subunit  
18 0.001156 0.216 b3474 yhhT -13.05 0.067927 149 -- 189 169 -- 204 UPF0118 family putative transporter  
19 0.001698 0.2633 b2575 trmN -12.50 0.088044 81 -- 92 14 -- 25 tRNA1(Val) (adenine(37)-N6)-methyltransferase  
20 0.001715 0.2633 b3453 ugpB -12.22 0.100645 241 -- 257 18 -- 32 sn-glycerol-3-phosphate ABC transporter periplasmic binding protein  
21 0.001755 0.2633 b3037 ygiB -10.05 0.269263 126 -- 141 3 -- 15 DUF1190 family protein  
22 0.001812 0.2633 b2566 era -10.12 0.260747 283 -- 292 16 -- 26 membrane-associated 16S rRNA-binding GTPase  
23 0.00185 0.2633 b3492 yhiN -11.85 0.119629 108 -- 154 124 -- 161 putative oxidoreductase  
24 0.001922 0.2633 b3017 ftsP -19.79 0.002953 203 -- 291 63 -- 135 septal ring component that protects the divisome from stress; multicopy suppressor of ftsI(Ts)  
25 0.002009 0.2633 b0134 panB -9.88 0.290153 57 -- 67 176 -- 186 3-methyl-2-oxobutanoate hydroxymethyltransferase  
26 0.002141 0.2633 b0183 rnhB -16.17 0.015603 251 -- 292 123 -- 175 ribonuclease HII degrades RNA of DNA-RNA hybrids  
27 0.002233 0.2633 b3525 yhjH -10.03 0.271118 185 -- 216 151 -- 171 cyclic-di-GMP phosphodiesterase FlhDC-regulated  
28 0.002284 0.2633 b1114 mfd -18.81 0.004608 253 -- 297 50 -- 95 transcription-repair coupling factor  
29 0.002294 0.2633 b0624 flc -16.49 0.013425 233 -- 293 118 -- 176 fluoride efflux channel dual topology membrane protein  
30 0.002398 0.2633 b0494 tesA -12.69 0.080698 14 -- 26 126 -- 138 acyl-CoA thioesterase 1 and protease I and lysophospholipase L1  
31 0.002426 0.2633 b2593 yfiH -12.28 0.097562 144 -- 222 126 -- 203 UPF0124 family protein  
32 0.002513 0.2642 b3456 livM -11.89 0.117100 251 -- 271 186 -- 206 branched-chain amino acid ABC transporter permease  
33 0.002591 0.2642 b0331 prpB -22.44 0.000909 137 -- 159 1 -- 22 2-methylisocitrate lyase  
34 0.002769 0.2736 b2416 ptsI -14.05 0.042463 178 -- 225 128 -- 177 PEP-protein phosphotransferase of PTS system (enzyme I)  
35 0.002845 0.2736 b3887 dtd -14.98 0.027287 55 -- 74 191 -- 211 D-tyr-tRNA(Tyr) deacylase  
36 0.002935 0.2744 b3152 yraR -13.11 0.066158 241 -- 255 123 -- 138 putative nucleoside-diphosphate-sugar epimerase  
37 0.00305 0.2773 b4084 alsK -13.69 0.050122 28 -- 80 50 -- 101 D-allose kinase  
38 0.003319 0.2912 b3073 patA -6.81 0.814367 213 -- 222 107 -- 116 putrescine:2-oxoglutaric acid aminotransferase PLP-dependent  
39 0.003509 0.2912 b1293 sapB -10.75 0.197427 9 -- 16 196 -- 203 antimicrobial peptide transport ABC transporter permease  
40 0.003515 0.2912 b0188 tilS -11.97 0.112782 278 -- 295 116 -- 133 tRNA(Ile)-lysidine synthetase  
41 0.003653 0.2912 b2842 kduD -13.01 0.069205 14 -- 50 128 -- 174 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase; KDG oxidoreductase; 20-ketosteroid reductase b4266 b2774
42 0.003683 0.2912 b2221 atoD -14.87 0.028783 141 -- 155 6 -- 19 acetyl-CoA:acetoacetyl-CoA transferase alpha subunit  
43 0.003721 0.2912 b3232 zapE -10.85 0.189153 236 -- 256 70 -- 90 divisome ATPase  
44 0.003817 0.292 b0967 rlmI -10.41 0.230051 81 -- 118 128 -- 161 23S rRNA m(5)C1962 methyltransferase SAM-dependent  
45 0.003942 0.2948 b0686 ybfF -11.97 0.113030 234 -- 245 63 -- 74 acyl-CoA esterase  
46 0.004081 0.2985 b2466 ypfG -10.37 0.233995 256 -- 280 68 -- 95 DUF1176 family protein  
47 0.004619 0.3205 b4142 groS -15.85 0.018169 259 -- 271 196 -- 208 Cpn10 chaperonin GroES small subunit of GroESL  
48 0.004626 0.3205 b3462 ftsX -13.20 0.063258 14 -- 27 192 -- 205 putative ABC transporter permease  
49 0.004667 0.3205 b1277 ribA -9.86 0.291903 241 -- 249 16 -- 24 GTP cyclohydrolase II  
50 0.004849 0.3217 b1079 flgH -12.97 0.070541 130 -- 141 23 -- 34 flagellar protein of basal-body outer-membrane L ring  
51 0.005002 0.3217 b0115 aceF -12.52 0.087110 146 -- 171 149 -- 173 pyruvate dehydrogenase dihydrolipoyltransacetylase component E2  
52 0.005023 0.3217 b0403 malZ -9.64 0.320537 253 -- 286 155 -- 185 maltodextrin glucosidase  
53 0.005067 0.3217 b3666 uhpT -10.07 0.266829 134 -- 177 167 -- 215 hexose phosphate transporter  
54 0.005402 0.3247 b3054 ygiF -14.97 0.027422 5 -- 80 111 -- 177 inorganic triphosphatase  
55 0.005617 0.3247 b2829 ptsP -11.41 0.146041 68 -- 133 122 -- 174 PEP-protein phosphotransferase enzyme I; GAF domain containing protein  
56 0.005619 0.3247 b2781 mazG -9.54 0.334798 182 -- 193 141 -- 152 nucleoside triphosphate pyrophosphohydrolase  
57 0.00565 0.3247 b2081 yegQ -17.30 0.009213 136 -- 160 1 -- 21 putative peptidase  
58 0.005664 0.3247 b1878 flhE -13.77 0.048330 266 -- 286 140 -- 162 proton seal during flagellar secretion  
59 0.005693 0.3247 b1959 yedA -9.74 0.306961 258 -- 278 1 -- 22 amino acid exporter for phenylalanine threonine  
60 0.005924 0.3261 b4201 priB -15.35 0.022961 159 -- 180 18 -- 40 primosomal protein N  
61 0.006025 0.3261 b4330 yjiH -10.68 0.204041 214 -- 227 80 -- 92 nucleoside recognition pore and gate family putative inner membrane transporter  
62 0.006126 0.3261 b3824 rhtB -10.68 0.204362 7 -- 23 171 -- 187 homoserine homoserine lactone and S-methyl-methionine efflux pump  
63 0.006154 0.3261 b3750 rbsC -15.65 0.019915 89 -- 120 139 -- 174 D-ribose ABC transporter permease  
64 0.006252 0.3261 b3195 mlaF -10.58 0.212925 52 -- 62 81 -- 91 ABC transporter maintaining OM lipid asymmetry ATP-binding protein  
65 0.006332 0.3261 b3857 mobA -11.59 0.134663 143 -- 181 126 -- 173 molybdopterin-guanine dinucleotide synthase  
66 0.006473 0.3261 b0712 ybgK -17.58 0.008094 217 -- 255 130 -- 164 putative allophanate hydrolase subunit 2  
67 0.006568 0.3261 b1927 amyA -8.95 0.423898 77 -- 95 58 -- 76 cytoplasmic alpha-amylase  
68 0.00659 0.3261 b4080 mdtP -14.15 0.040423 195 -- 221 144 -- 172 outer membrane factor of efflux pump  
69 0.006739 0.3286 b2265 menF -9.03 0.410924 65 -- 108 52 -- 101 isochorismate synthase 2  
70 0.00686 0.3298 b0761 modE -10.05 0.269682 248 -- 271 57 -- 77 transcriptional repressor for the molybdenum transport operon modABC  
71 0.00726 0.3408 b2944 yggI -9.32 0.365111 156 -- 174 1 -- 18 Zn-dependent metalloprotease-related protein  
72 0.007293 0.3408 b3240 aaeB -15.57 0.020683 172 -- 248 45 -- 133 p-hydroxybenzoic acid efflux system component  
73 0.007584 0.3458 b0059 rapA -13.35 0.058963 263 -- 277 46 -- 60 RNA polymerase remodeling/recycling factor ATPase; RNA polymerase-associated ATP-dependent RNA translocase  
74 0.007724 0.3458 b1261 trpB -16.40 0.014006 36 -- 47 195 -- 206 tryptophan synthase beta subunit  
75 0.007778 0.3458 b0766 ybhA -9.49 0.341100 208 -- 245 124 -- 172 pyridoxal phosphate (PLP) phosphatase  
76 0.007832 0.3458 b1054 lpxL -10.56 0.214918 224 -- 240 1 -- 17 lauryl-acyl carrier protein (ACP)-dependent acyltransferase  
77 0.007981 0.3458 b1738 chbB -9.80 0.299184 58 -- 71 174 -- 187 N N'-diacetylchitobiose-specific enzyme IIB component of PTS  
78 0.008099 0.3458 b2810 csdA -12.29 0.097398 132 -- 155 3 -- 23 cysteine sulfinate desulfinase  
79 0.008119 0.3458 b0945 pyrD -11.48 0.141710 30 -- 41 191 -- 202 dihydro-orotate oxidase FMN-linked  
80 0.008443 0.3551 b3791 wecE -14.19 0.039608 22 -- 66 14 -- 64 TDP-4-oxo-6-deoxy-D-glucose transaminase  
81 0.008673 0.3575 b1683 sufB -9.84 0.294156 211 -- 257 124 -- 171 component of SufBCD Fe-S cluster assembly scaffold  
82 0.008839 0.3575 b3680 yidL -8.33 0.532337 91 -- 113 142 -- 164 AraC family putative transcriptional regulator  
83 0.008941 0.3575 b3343 tusB -13.46 0.055944 1 -- 14 190 -- 203 mnm(5)-s(2)U34-tRNA synthesis 2-thiolation protein  
84 0.009006 0.3575 b1924 fliD -8.51 0.498321 24 -- 43 139 -- 158 flagellar filament capping protein  
85 0.009065 0.3575 b3155 yhbQ -10.34 0.236900 54 -- 88 123 -- 160 GIY-YIG nuclease superfamily protein  
86 0.009326 0.3575 b0899 ycaM -11.50 0.140486 23 -- 68 127 -- 173 putative transporter  
87 0.009479 0.3575 b1192 ldcA -9.25 0.375459 184 -- 216 125 -- 154 murein tetrapeptide carboxypeptidase; LD-carboxypeptidase A  
88 0.009956 0.3575 b2672 ygaM -12.38 0.093122 193 -- 231 56 -- 92 putative membrane-anchored DUF883 family ribosome-binding protein  
89 0.009985 0.3575 b0477 gsk -9.51 0.338446 88 -- 115 123 -- 150 inosine/guanosine kinase  
90 0.01008 0.3575 b3994 thiC -11.53 0.138483 145 -- 158 1 -- 14 phosphomethylpyrimidine synthase  
91 0.01018 0.3575 b1660 ydhC -16.12 0.016020 223 -- 255 172 -- 209 putative arabinose efflux transporter  
92 0.01029 0.3575 b3360 pabA -10.28 0.244097 93 -- 100 16 -- 23 aminodeoxychorismate synthase subunit II  
93 0.01041 0.3575 b3556 cspA -12.65 0.082193 78 -- 98 139 -- 160 RNA chaperone and antiterminator cold-inducible  
94 0.01043 0.3575 b4293 fecI -12.90 0.072974 203 -- 229 60 -- 87 RNA polymerase sigma-19 factor fec operon-specific; ECF sigma factor  
95 0.01047 0.3575 b4232 fbp -15.00 0.027086 59 -- 98 140 -- 173 fructose-1 6-bisphosphatase I  
96 0.01055 0.3575 b1953 yodD -11.39 0.147949 264 -- 273 196 -- 205 uncharacterized protein  
97 0.01056 0.3575 b2372 yfdV -22.84 0.000764 17 -- 36 167 -- 186 putative transporter  
98 0.01073 0.3575 b0424 yajL -11.45 0.143367 14 -- 29 155 -- 170 oxidative-stress-resistance chaperone  
99 0.01084 0.3575 b0872 hcr -12.58 0.084706 106 -- 121 192 -- 205 HCP oxidoreductase NADH-dependent  
100 0.01091 0.3575 b0123 cueO -12.06 0.108476 211 -- 256 146 -- 195 multicopper oxidase (laccase)  
101 0.01097 0.3575 b1882 cheY -8.64 0.475467 226 -- 255 72 -- 99 chemotaxis regulator transmitting signal to flagellar motor component  
102 0.01106 0.3575 b0647 ybeT -15.01 0.026876 192 -- 264 115 -- 176 Sel1 family TPR-like repeat protein  
103 0.0111 0.3575 b2821 ptrA -11.45 0.143539 261 -- 295 141 -- 175 protease III  
104 0.01113 0.3575 b2108 yehA -14.54 0.033608 284 -- 300 56 -- 72 putative fimbrial-like adhesin protein  
105 0.01118 0.3575 b0439 lon -14.09 0.041610 272 -- 293 1 -- 24 DNA-binding ATP-dependent protease La  
106 0.01145 0.3575 b2350 gtrA -11.86 0.119007 4 -- 25 148 -- 167 CPS-53 (KpLE1) prophage; bactoprenol-linked glucose translocase/flippase  
107 0.01169 0.3575 b3858 yihD -12.50 0.087903 89 -- 104 63 -- 77 DUF1040 protein YihD  
108 0.01175 0.3575 b0723 sdhA -10.39 0.232370 178 -- 209 28 -- 62 succinate dehydrogenase flavoprotein subunit  
109 0.01201 0.3575 b1096 pabC -8.08 0.578936 115 -- 139 144 -- 163 4-amino-4-deoxychorismate lyase component of para-aminobenzoate synthase multienzyme complex  
110 0.01217 0.3575 b1324 tpx -10.54 0.217228 251 -- 258 126 -- 133 lipid hydroperoxide peroxidase  
111 0.0122 0.3575 b1813 nudL -9.44 0.347588 99 -- 131 174 -- 206 putative CoA pyrophosphohydrolase weak 3-phosphohydroxypyruvate phosphatase  
112 0.01232 0.3575 b1540 rspR -15.19 0.024761 13 -- 44 171 -- 202 transcriptional repressor for rspAB  
113 0.01268 0.3575 b2066 udk -9.33 0.364673 240 -- 253 17 -- 31 uridine/cytidine kinase  
114 0.01268 0.3575 b0888 trxB -13.24 0.061992 5 -- 14 83 -- 92 thioredoxin reductase FAD/NAD(P)-binding  
115 0.01273 0.3575 b3440 yhhX -9.67 0.316530 203 -- 215 123 -- 136 putative oxidoreductase  
116 0.01276 0.3575 b2989 yghU -14.25 0.038539 247 -- 281 170 -- 208 putative S-transferase  
117 0.01283 0.3575 b3096 mzrA -10.41 0.230387 15 -- 55 168 -- 208 modulator of EnvZ/OmpR regulon  
118 0.01293 0.3575 b1598 ydgD -17.08 0.010207 53 -- 140 115 -- 186 putative peptidase  
119 0.013 0.3575 b0801 ybiC -16.26 0.015008 158 -- 253 108 -- 187 putative dehydrogenase  
120 0.01317 0.3575 b1158 pinE -11.56 0.136715 30 -- 59 115 -- 145 e14 prophage; site-specific DNA recombinase  
121 0.01323 0.3575 b3429 glgA -14.56 0.033318 190 -- 240 123 -- 176 glycogen synthase  
122 0.01342 0.3575 b4087 alsA -13.14 0.065197 11 -- 23 124 -- 136 D-allose ABC transporter ATPase  
123 0.01344 0.3575 b2615 nadK -10.03 0.271821 99 -- 122 57 -- 77 NAD kinase  
124 0.0136 0.3575 b4065 yjcE -10.85 0.188871 258 -- 289 125 -- 174 putative cation/proton antiporter  
125 0.01377 0.3575 b2827 thyA -14.98 0.027366 100 -- 109 16 -- 25 thymidylate synthetase  
126 0.01383 0.3575 b1843 yobB -8.48 0.503741 101 -- 118 168 -- 185 C-N hydrolase family protein  
127 0.01385 0.3575 b3832 rmuC -11.83 0.120260 236 -- 246 193 -- 203 DNA recombination protein  
128 0.01397 0.3575 b2440 eutC -11.59 0.134682 23 -- 48 126 -- 153 ethanolamine ammonia-lyase small subunit (light chain)  
129 0.01414 0.3575 b3579 yiaO -11.03 0.174508 249 -- 273 50 -- 76 2 3-diketo-L-gulonate-binding periplasmic protein  
130 0.0142 0.3575 b0885 aat -14.04 0.042507 189 -- 220 112 -- 144 leucyl/phenylalanyl-tRNA-protein transferase  
131 0.01426 0.3575 b0048 folA -12.08 0.107221 135 -- 211 115 -- 187 dihydrofolate reductase  
132 0.0143 0.3575 b0147 ligT -9.89 0.288456 69 -- 117 16 -- 69 2'-5' RNA ligase  
133 0.01432 0.3575 b2342 fadI -11.00 0.176527 78 -- 109 125 -- 153 beta-ketoacyl-CoA thiolase anaerobic subunit  
134 0.01437 0.3575 b1798 leuE -11.20 0.161096 19 -- 44 168 -- 191 leucine efflux protein  
135 0.01453 0.3575 b2934 cmtB -15.85 0.018111 229 -- 275 145 -- 186 putative mannitol-specific enzyme IIA component of PTS  
136 0.01456 0.3575 b0369 hemB -9.31 0.367566 203 -- 221 75 -- 90 5-aminolevulinate dehydratase (porphobilinogen synthase)  
137 0.01486 0.3575 b3967 murI -16.98 0.010727 107 -- 167 42 -- 96 glutamate racemase  
138 0.01487 0.3575 b3771 ilvD -15.83 0.018324 35 -- 66 67 -- 98 dihydroxyacid dehydratase  
139 0.01488 0.3575 b2167 fruA -12.05 0.108648 223 -- 242 167 -- 187 fused fructose-specific PTS enzymes: IIBcomponent/IIC components  
140 0.01495 0.3575 b2415 ptsH -9.89 0.288161 112 -- 122 24 -- 34 phosphohistidinoprotein-hexose phosphotransferase component of PTS system (Hpr)  
141 0.01524 0.3575 b0133 panC -11.57 0.136229 4 -- 24 142 -- 162 pantothenate synthetase  
142 0.01524 0.3575 b0611 rna -12.80 0.076457 138 -- 176 173 -- 202 ribonuclease I  
143 0.01531 0.3575 b1641 slyB -10.83 0.190300 158 -- 167 83 -- 92 outer membrane lipoprotein  
144 0.01541 0.3575 b4555 yicS -14.57 0.033136 213 -- 290 115 -- 187 putative periplasmic protein  
145 0.01541 0.3575 b1191 cvrA -14.91 0.028165 61 -- 91 128 -- 160 putative cation/proton antiporter  
146 0.01559 0.358 b4394 yjjX -8.60 0.483218 101 -- 114 123 -- 137 non-canonical purine NTP phosphatase ITPase/XTPase  
147 0.01564 0.358 b3153 yhbO -15.63 0.020103 154 -- 186 72 -- 98 stress-resistance protein  
148 0.01584 0.3602 b1822 rlmA -10.68 0.203557 148 -- 239 111 -- 186 23S rRNA m(1)G745 methyltransferase SAM-dependent  
149 0.01599 0.3612 b3236 mdh -10.77 0.195799 223 -- 232 196 -- 205 malate dehydrogenase NAD(P)-binding  
150 0.01679 0.3749 b3550 yiaC -14.78 0.030008 125 -- 180 123 -- 174 GNAT family putative N-acetyltransferase  
151 0.01691 0.3749 b2442 intZ -12.49 0.088679 278 -- 291 17 -- 31 CPZ-55 prophage; putative phage integrase b2349
152 0.0171 0.3749 b3605 lldD -10.23 0.248595 212 -- 221 68 -- 77 L-lactate dehydrogenase FMN-linked  
153 0.01719 0.3749 b2997 hybO -10.59 0.212773 44 -- 57 176 -- 189 hydrogenase 2 small subunit  
154 0.01719 0.3749 b3726 pstA -9.04 0.409183 290 -- 297 24 -- 31 phosphate ABC transporter permease  
155 0.01733 0.3749 b3542 dppC -14.36 0.036537 40 -- 62 74 -- 93 dipeptide/heme ABC transporter permease  
156 0.01739 0.3749 b4332 yjiJ -7.83 0.625728 95 -- 115 80 -- 101 DUF1228 family putative inner membrane MFS superfamily transporter  
157 0.01768 0.3749 b1216 chaA -11.60 0.134178 242 -- 292 18 -- 65 calcium/sodium:proton antiporter  
158 0.01775 0.3749 b1187 fadR -13.89 0.045798 42 -- 66 152 -- 176 fatty acid metabolism regulon transcriptional regulator  
159 0.01779 0.3749 b2504 yfgG -11.18 0.162405 230 -- 250 168 -- 187 uncharacterized protein  
160 0.01787 0.3749 b3935 priA -8.27 0.542824 222 -- 250 110 -- 140 Primosome factor n' (replication factor Y)  
161 0.01797 0.3749 b1921 fliZ -13.03 0.068461 73 -- 137 125 -- 204 RpoS antagonist; putative regulator of FliA activity  
162 0.01805 0.3749 b2499 purM -13.07 0.067336 182 -- 195 13 -- 27 phosphoribosylaminoimidazole synthetase  
163 0.01822 0.376 b1073 flgB -9.73 0.308533 172 -- 220 24 -- 70 flagellar component of cell-proximal portion of basal-body rod  
164 0.01856 0.3808 b0715 abrB -11.36 0.150074 79 -- 113 125 -- 160 regulator of aidB expression; inner membrane protein  
165 0.01884 0.3812 b3291 mscL -11.12 0.167422 252 -- 267 193 -- 208 mechanosensitive channel protein high conductance  
166 0.01886 0.3812 b3300 secY -11.48 0.141920 168 -- 177 196 -- 205 preprotein translocase membrane subunit  
167 0.01932 0.3812 b2912 fau -13.57 0.053124 153 -- 189 109 -- 152 5-formyltetrahydrofolate cyclo-ligase family protein  
168 0.01937 0.3812 b4354 yjiY -11.43 0.145336 99 -- 125 132 -- 159 putative transporter  
169 0.01937 0.3812 b4557 yidD -14.07 0.041992 2 -- 13 11 -- 22 membrane protein insertion efficiency factor UPF0161 family inner membrane protein  
170 0.01941 0.3812 b3911 cpxA -13.13 0.065341 265 -- 299 168 -- 204 sensory histidine kinase in two-component regulatory system with CpxR  
171 0.01954 0.3812 b3687 ibpA -6.40 0.875621 11 -- 20 10 -- 18 heat shock chaperone  
172 0.01969 0.3812 b0213 yafS -9.47 0.344290 95 -- 113 1 -- 19 putative S-adenosyl-L-methionine-dependent methyltransferase  
173 0.0197 0.3812 b3210 arcB -10.66 0.206219 214 -- 224 197 -- 207 aerobic respiration control sensor histidine protein kinase cognate to two-component response regulators ArcA and RssB  
174 0.01972 0.3812 b0478 ybaL -7.90 0.612018 5 -- 14 166 -- 176 inner membrane putative NAD(P)-binding transporter  
175 0.0199 0.3812 b3085 ygjP -10.42 0.228945 225 -- 233 128 -- 136 putative metal dependent hydrolase  
176 0.01994 0.3812 b2170 setB -11.80 0.122017 181 -- 237 58 -- 116 lactose/glucose efflux system  
177 0.02028 0.3833 b1732 katE -12.45 0.090323 227 -- 246 168 -- 187 catalase HPII heme d-containing  
178 0.02044 0.3833 b3433 asd -8.72 0.462346 170 -- 185 58 -- 71 aspartate-semialdehyde dehydrogenase NAD(P)-binding  
179 0.02059 0.3833 b2535 csiE -10.55 0.216292 103 -- 142 58 -- 90 stationary phase inducible protein  
180 0.02081 0.3833 b3728 pstS -9.23 0.378852 18 -- 25 128 -- 135 phosphate ABC transporter periplasmic binding protein  
181 0.0209 0.3833 b2233 yfaL -9.66 0.317681 275 -- 285 50 -- 60 adhesin  
182 0.02094 0.3833 b0248 yafX -12.67 0.081205 189 -- 235 52 -- 92 CP4-6 prophage; uncharacterized protein b2643
183 0.02111 0.3833 b0461 tomB -12.41 0.091700 125 -- 158 128 -- 160 Hha toxicity attenuator; conjugation-related protein  
184 0.02128 0.3833 b2831 mutH -12.07 0.107608 142 -- 230 114 -- 189 methyl-directed mismatch repair protein  
185 0.02128 0.3833 b2276 nuoN -8.72 0.461673 62 -- 81 196 -- 211 NADH:ubiquinone oxidoreductase membrane subunit N  
186 0.02152 0.3833 b3581 sgbH -10.17 0.255482 135 -- 158 123 -- 153 3-keto-L-gulonate 6-phosphate decarboxylase  
187 0.02173 0.3833 b3679 yidK -10.16 0.256396 240 -- 256 191 -- 205 putative transporter  
188 0.0218 0.3833 b3357 crp -15.41 0.022266 196 -- 257 123 -- 172 cAMP-activated global transcription factor mediator of catabolite repression  
189 0.02188 0.3833 b4033 malF -11.66 0.130598 273 -- 284 194 -- 205 maltose transporter subunit  
190 0.02217 0.3833 b2754 ygbF -10.33 0.238061 176 -- 225 124 -- 165 CRISPR adaptation ssRNA endonuclease  
191 0.02237 0.3833 b1658 purR -11.05 0.172432 254 -- 265 163 -- 174 transcriptional repressor hypoxanthine-binding  
192 0.02246 0.3833 b4340 yjiR -11.68 0.128907 36 -- 62 126 -- 153 putative DNA-binding transcriptional regulator/putative aminotransferase  
193 0.0225 0.3833 b3751 rbsB -14.76 0.030308 38 -- 56 74 -- 93 D-ribose ABC transporter periplasmic binding protein; ribose chemotaxis receptor  
194 0.02283 0.3833 b3823 rhtC -9.67 0.316154 216 -- 300 113 -- 178 threonine efflux pump  
195 0.02319 0.3833 b1233 ychJ -7.86 0.620262 61 -- 80 1 -- 18 UPF0225 family protein  
196 0.0235 0.3833 b3105 yhaJ -11.17 0.163135 292 -- 299 86 -- 93 LysR family putative transcriptional regulator  
197 0.02355 0.3833 b2764 cysJ -10.17 0.255883 3 -- 30 98 -- 123 sulfite reductase alpha subunit flavoprotein  
198 0.0236 0.3833 b1110 ycfJ -10.00 0.275196 69 -- 84 142 -- 161 uncharacterized protein  
199 0.02363 0.3833 b4141 yjeH -8.04 0.585705 57 -- 67 64 -- 74 putative transporter  
200 0.02363 0.3833 b3068 mug -12.10 0.106144 279 -- 297 1 -- 19 G/U mismatch-specific DNA glycosylase; xanthine DNA glycosylase  

Details of Selected Interaction Download Interaction Details 

mRNA

sRNA


		

		

		

		
		

			

				
				

					
					
				

				
				

					
					
				

				
				

					
					
				

				
				

					
					
				

				
			

			

				
				

					
					
				

				
				

					
					
				

				
				

					
					
				

				
				

					
					
				

				
			

		
 
		
		

		
		

		
		
		
		
Evolutionary conservation of mRNA targets
			(alignment generated with
			Jalview)

		
		
		
Evolutionary conservation of sRNA
			(alignment generated with
			Jalview)

		
		
		

		
	

	
	
	

	
	
	




			 
	





	
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Results are computed with CopraRNA version 2.1.2



		 
	

			





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