181 |
0.0209 |
0.3833 |
b2233 |
yfaL |
-9.66 |
0.317681 |
275 -- 285 |
50 -- 60 |
adhesin |
|
_____________274______________286\n_____________|________________|\n5'-UAU...UCUCU___AA__G________CGGUC...CAU-3'\n______________GCU__CG_UGUCGCGG\n______________:||__||_||||||||\n______________UGA__GC_ACAGCGCC\n3'-UUU...CGUGU___A___G________AUUUU...UAG-5'\n_____________|________________|\n_____________61_______________49\n |
279 -- 285 |
50 -- 56 |
-20.2435 kcal/mol |
4.65708 kcal/mol |
6.1451 kcal/mol |
274 286@LB@ | |@LB@5'-UAU...UCUCU AA G CGGUC...CAU-3'@LB@ GCU CG UGUCGCGG@LB@ :|| || ||||||||@LB@ UGA GC ACAGCGCC@LB@3'-UUU...CGUGU A G AUUUU...UAG-5'@LB@ | |@LB@ 61 49@LB@@LB@@LB@Energy -9.66 kcal/mol@LB@Hybridization Energy -20.2435 kcal/mol@LB@Unfolding Energy - mRNA 4.65708 kcal/mol@LB@Unfolding Energy - sRNA 6.1451 kcal/mol@LB@@LB@Position - mRNA 275 -- 285@LB@Position - sRNA 50 -- 60@LB@Position Seed - mRNA 279 -- 285@LB@Position Seed - sRNA 50 -- 56@LB@ |
182 |
0.02094 |
0.3833 |
b0248 |
yafX |
-12.67 |
0.081205 |
189 -- 235 |
52 -- 92 |
CP4-6 prophage; uncharacterized protein |
b2643 |
_____________188______________________236\n_____________|________________________|\n5'-CCG...ACACA___G_________C____ACC___UAACC...GGC-3'\n______________GAC_CAGCACGAC_UCGC___CGC\n______________:||_||||||:||_||||___|||\n______________UUG_GUCGUGUUG_AGCG___GCG\n3'-UUU...UUGCG_____________A____ACA___CCAUU...UAG-5'\n_____________|________________________|\n_____________93_______________________51\n |
218 -- 224 |
63 -- 69 |
-27.2596 kcal/mol |
3.0161 kcal/mol |
15.5954 kcal/mol |
188 236@LB@ | |@LB@5'-CCG...ACACA G C ACC UAACC...GGC-3'@LB@ GAC CAGCACGAC UCGC CGC@LB@ :|| ||||||:|| |||| |||@LB@ UUG GUCGUGUUG AGCG GCG@LB@3'-UUU...UUGCG A ACA CCAUU...UAG-5'@LB@ | |@LB@ 93 51@LB@@LB@@LB@Energy -12.67 kcal/mol@LB@Hybridization Energy -27.2596 kcal/mol@LB@Unfolding Energy - mRNA 3.0161 kcal/mol@LB@Unfolding Energy - sRNA 15.5954 kcal/mol@LB@@LB@Position - mRNA 189 -- 235@LB@Position - sRNA 52 -- 92@LB@Position Seed - mRNA 218 -- 224@LB@Position Seed - sRNA 63 -- 69@LB@ |
183 |
0.02111 |
0.3833 |
b0461 |
tomB |
-12.41 |
0.091700 |
125 -- 158 |
128 -- 160 |
Hha toxicity attenuator; conjugation-related protein |
|
_____________124_________________________________________159\n_____________|___________________________________________|\n5'-UGC...GGAUG________CCCAAA_G_______AUC____C__C____G____UCUGU...AUC-3'\n______________AAUACUCA______A_ACAUGAU____GCA_AG_UUAA_UUUC\n______________||||||||______|_|||||||____|||_||_|:||_||||\n______________UUAUGAGU______U_UGUACUA____CGU_UC_AGUU_AAAG\n3'-UUU...UGUGG________CAG____G_______CGUC___________G____UCUUA...UAG-5'\n_____________|___________________________________________|\n_____________161_________________________________________127\n |
224 -- 230 |
163 -- 169 |
-23.2008 kcal/mol |
3.84731 kcal/mol |
8.26055 kcal/mol |
124 159@LB@ | |@LB@5'-UGC...GGAUG CCCAAA G AUC C C G UCUGU...AUC-3'@LB@ AAUACUCA A ACAUGAU GCA AG UUAA UUUC@LB@ |||||||| | ||||||| ||| || |:|| ||||@LB@ UUAUGAGU U UGUACUA CGU UC AGUU AAAG@LB@3'-UUU...UGUGG CAG G CGUC G UCUUA...UAG-5'@LB@ | |@LB@ 161 127@LB@@LB@@LB@Energy -12.41 kcal/mol@LB@Hybridization Energy -23.2008 kcal/mol@LB@Unfolding Energy - mRNA 3.84731 kcal/mol@LB@Unfolding Energy - sRNA 8.26055 kcal/mol@LB@@LB@Position - mRNA 125 -- 158@LB@Position - sRNA 128 -- 160@LB@Position Seed - mRNA 224 -- 230@LB@Position Seed - sRNA 163 -- 169@LB@ |
184 |
0.02128 |
0.3833 |
b2831 |
mutH |
-12.07 |
0.107608 |
142 -- 230 |
114 -- 189 |
methyl-directed mismatch repair protein |
|
_____________141______________231\n_____________|________________|\n5'-UUC...CUGCG________________AUUGC...CGG-3'\n______________AAUAUUCGG_CACAUA\n______________||||:||:|_||||:|\n______________UUAUGAGUC_GUGUGU\n3'-UUU...UGUGG_________A______ACUAC...UAG-5'\n_____________|________________|\n_____________190______________113\n |
154 -- 160 |
174 -- 180 |
-15.1193 kcal/mol |
2.199 kcal/mol |
0.596263 kcal/mol |
141 231@LB@ | |@LB@5'-UUC...CUGCG AUUGC...CGG-3'@LB@ AAUAUUCGG CACAUA@LB@ ||||:||:| ||||:|@LB@ UUAUGAGUC GUGUGU@LB@3'-UUU...UGUGG A ACUAC...UAG-5'@LB@ | |@LB@ 190 113@LB@@LB@@LB@Energy -12.07 kcal/mol@LB@Hybridization Energy -15.1193 kcal/mol@LB@Unfolding Energy - mRNA 2.199 kcal/mol@LB@Unfolding Energy - sRNA 0.596263 kcal/mol@LB@@LB@Position - mRNA 142 -- 230@LB@Position - sRNA 114 -- 189@LB@Position Seed - mRNA 154 -- 160@LB@Position Seed - sRNA 174 -- 180@LB@ |
185 |
0.02128 |
0.3833 |
b2276 |
nuoN |
-8.72 |
0.461673 |
62 -- 81 |
196 -- 211 |
NADH:ubiquinone oxidoreductase membrane subunit N |
|
_____________61______________82\n_____________|_______________|\n5'-GUA...UAUGA__________U____GUGCU...AUC-3'\n______________UC_CUGUUGC_GGUG\n______________||_||||:||_|||:\n______________AG_GACAGCG_CCAU\n3'-UUU...GUUGA__C____________UUUAU...UAG-5'\n_____________|_______________|\n_____________212_____________195\n |
69 -- 75 |
52 -- 58 |
-15.8669 kcal/mol |
5.2118 kcal/mol |
5.88061 kcal/mol |
61 82@LB@ | |@LB@5'-GUA...UAUGA U GUGCU...AUC-3'@LB@ UC CUGUUGC GGUG@LB@ || ||||:|| |||:@LB@ AG GACAGCG CCAU@LB@3'-UUU...GUUGA C UUUAU...UAG-5'@LB@ | |@LB@ 212 195@LB@@LB@@LB@Energy -8.72 kcal/mol@LB@Hybridization Energy -15.8669 kcal/mol@LB@Unfolding Energy - mRNA 5.2118 kcal/mol@LB@Unfolding Energy - sRNA 5.88061 kcal/mol@LB@@LB@Position - mRNA 62 -- 81@LB@Position - sRNA 196 -- 211@LB@Position Seed - mRNA 69 -- 75@LB@Position Seed - sRNA 52 -- 58@LB@ |
186 |
0.02152 |
0.3833 |
b3581 |
sgbH |
-10.17 |
0.255482 |
135 -- 158 |
123 -- 153 |
3-keto-L-gulonate 6-phosphate decarboxylase |
|
_____________134________159\n_____________|__________|\n5'-UUU...UAAGG__________UAUGA...AAG-3'\n______________AG_CACACAU\n______________||_|||||||\n______________UC_GUGUGUA\n3'-UUU...AUGAG__A_______CUACG...UAG-5'\n_____________|__________|\n_____________154________122\n |
193 -- 199 |
166 -- 172 |
-9.15702 kcal/mol |
1.98532 kcal/mol |
0.591348 kcal/mol |
134 159@LB@ | |@LB@5'-UUU...UAAGG UAUGA...AAG-3'@LB@ AG CACACAU@LB@ || |||||||@LB@ UC GUGUGUA@LB@3'-UUU...AUGAG A CUACG...UAG-5'@LB@ | |@LB@ 154 122@LB@@LB@@LB@Energy -10.17 kcal/mol@LB@Hybridization Energy -9.15702 kcal/mol@LB@Unfolding Energy - mRNA 1.98532 kcal/mol@LB@Unfolding Energy - sRNA 0.591348 kcal/mol@LB@@LB@Position - mRNA 135 -- 158@LB@Position - sRNA 123 -- 153@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 166 -- 172@LB@ |
187 |
0.02173 |
0.3833 |
b3679 |
yidK |
-10.16 |
0.256396 |
240 -- 256 |
191 -- 205 |
putative transporter |
|
_____________239________________________________________257\n_____________|__________________________________________|\n5'-UUU...UUACG_________GC______________U____GAA_________AAACA...AAG-3'\n______________CUGCUGGUG__GGUGAU____CACC_GGUG___GGUC_CGCA\n______________|||||||:|__||||||____||||_::|:___:|||_|:||\n______________GACGACCGC__CCACUA____GUGG_UUAU___UCAG_GUGU\n3'-UUU...UAUUA_________________AAAU_________GAG____U____ACUAC...UAG-5'\n_____________|__________________________________________|\n_____________206________________________________________190\n |
242 -- 248 |
197 -- 203 |
-39.2862 kcal/mol |
16.885 kcal/mol |
15.3993 kcal/mol |
239 257@LB@ | |@LB@5'-UUU...UUACG GC U GAA AAACA...AAG-3'@LB@ CUGCUGGUG GGUGAU CACC GGUG GGUC CGCA@LB@ |||||||:| |||||| |||| ::|: :||| |:||@LB@ GACGACCGC CCACUA GUGG UUAU UCAG GUGU@LB@3'-UUU...UAUUA AAAU GAG U ACUAC...UAG-5'@LB@ | |@LB@ 206 190@LB@@LB@@LB@Energy -10.16 kcal/mol@LB@Hybridization Energy -39.2862 kcal/mol@LB@Unfolding Energy - mRNA 16.885 kcal/mol@LB@Unfolding Energy - sRNA 15.3993 kcal/mol@LB@@LB@Position - mRNA 240 -- 256@LB@Position - sRNA 191 -- 205@LB@Position Seed - mRNA 242 -- 248@LB@Position Seed - sRNA 197 -- 203@LB@ |
188 |
0.0218 |
0.3833 |
b3357 |
crp |
-15.41 |
0.022266 |
196 -- 257 |
123 -- 172 |
cAMP-activated global transcription factor mediator of catabolite repression |
|
_____________195_________________258\n_____________|___________________|\n5'-GAC...AUAAC____________UU_____ACCGC...AGG-3'\n______________CGCGCAUGGUGC__GGCAA\n______________|:|:||||:|||__|||||\n______________GUGUGUACUACG__CCGUU\n3'-UUU...AGUCA____________U______CAGUU...UAG-5'\n_____________|___________________|\n_____________173_________________122\n |
201 -- 207 |
161 -- 167 |
-26.7729 kcal/mol |
8.17538 kcal/mol |
7.52835 kcal/mol |
195 258@LB@ | |@LB@5'-GAC...AUAAC UU ACCGC...AGG-3'@LB@ CGCGCAUGGUGC GGCAA@LB@ |:|:||||:||| |||||@LB@ GUGUGUACUACG CCGUU@LB@3'-UUU...AGUCA U CAGUU...UAG-5'@LB@ | |@LB@ 173 122@LB@@LB@@LB@Energy -15.41 kcal/mol@LB@Hybridization Energy -26.7729 kcal/mol@LB@Unfolding Energy - mRNA 8.17538 kcal/mol@LB@Unfolding Energy - sRNA 7.52835 kcal/mol@LB@@LB@Position - mRNA 196 -- 257@LB@Position - sRNA 123 -- 172@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 161 -- 167@LB@ |
189 |
0.02188 |
0.3833 |
b4033 |
malF |
-11.66 |
0.130598 |
273 -- 284 |
194 -- 205 |
maltose transporter subunit |
|
_____________272__________285\n_____________|____________|\n5'-CUG...UCGGC____________UACCU...UAA-3'\n______________CUGCUGGUGGGU\n______________|||||||:||||\n______________GACGACCGCCCA\n3'-UUU...UAUUA____________CUAAA...UAG-5'\n_____________|____________|\n_____________206__________193\n |
278 -- 284 |
194 -- 200 |
-24.1506 kcal/mol |
7.59361 kcal/mol |
9.05892 kcal/mol |
272 285@LB@ | |@LB@5'-CUG...UCGGC UACCU...UAA-3'@LB@ CUGCUGGUGGGU@LB@ |||||||:||||@LB@ GACGACCGCCCA@LB@3'-UUU...UAUUA CUAAA...UAG-5'@LB@ | |@LB@ 206 193@LB@@LB@@LB@Energy -11.66 kcal/mol@LB@Hybridization Energy -24.1506 kcal/mol@LB@Unfolding Energy - mRNA 7.59361 kcal/mol@LB@Unfolding Energy - sRNA 9.05892 kcal/mol@LB@@LB@Position - mRNA 273 -- 284@LB@Position - sRNA 194 -- 205@LB@Position Seed - mRNA 278 -- 284@LB@Position Seed - sRNA 194 -- 200@LB@ |
190 |
0.02217 |
0.3833 |
b2754 |
ygbF |
-10.33 |
0.238061 |
176 -- 225 |
124 -- 165 |
CRISPR adaptation ssRNA endonuclease |
|
_____________175____________226\n_____________|______________|\n5'-UGG...AAAAU________GC____ACGAG...GUG-3'\n______________GUACCUCC__GCUU\n______________|:|||:||__||||\n______________CGUGGGGG__CGAA\n3'-UUU...UACCC________AA____GUAG-5'\n_____________|______________|\n_____________166____________123\n |
232 -- 238 |
11 -- 17 |
-17.8256 kcal/mol |
3.33543 kcal/mol |
6.90657 kcal/mol |
175 226@LB@ | |@LB@5'-UGG...AAAAU GC ACGAG...GUG-3'@LB@ GUACCUCC GCUU@LB@ |:|||:|| ||||@LB@ CGUGGGGG CGAA@LB@3'-UUU...UACCC AA GUAG-5'@LB@ | |@LB@ 166 123@LB@@LB@@LB@Energy -10.33 kcal/mol@LB@Hybridization Energy -17.8256 kcal/mol@LB@Unfolding Energy - mRNA 3.33543 kcal/mol@LB@Unfolding Energy - sRNA 6.90657 kcal/mol@LB@@LB@Position - mRNA 176 -- 225@LB@Position - sRNA 124 -- 165@LB@Position Seed - mRNA 232 -- 238@LB@Position Seed - sRNA 11 -- 17@LB@ |