71 |
0.00726 |
0.3408 |
b2944 |
yggI |
-9.32 |
0.365111 |
156 -- 174 |
1 -- 18 |
Zn-dependent metalloprotease-related protein |
|
_____________155_____________175\n_____________|_______________|\n5'-GAA...AGCCA________AG_____UUUUC...ACC-3'\n______________CCUCUUGC__UCAUC\n______________||:|||||__|||||\n______________GGGGAACG__AGUAG\n3'-UUU...CCGUG________A______-5'\n_____________|______________|\n_____________19_____________1\n |
161 -- 167 |
7 -- 13 |
-18.0684 kcal/mol |
1.30619 kcal/mol |
6.71812 kcal/mol |
155 175@LB@ | |@LB@5'-GAA...AGCCA AG UUUUC...ACC-3'@LB@ CCUCUUGC UCAUC@LB@ ||:||||| |||||@LB@ GGGGAACG AGUAG@LB@3'-UUU...CCGUG A -5'@LB@ | |@LB@ 19 1@LB@@LB@@LB@Energy -9.32 kcal/mol@LB@Hybridization Energy -18.0684 kcal/mol@LB@Unfolding Energy - mRNA 1.30619 kcal/mol@LB@Unfolding Energy - sRNA 6.71812 kcal/mol@LB@@LB@Position - mRNA 156 -- 174@LB@Position - sRNA 1 -- 18@LB@Position Seed - mRNA 161 -- 167@LB@Position Seed - sRNA 7 -- 13@LB@ |
72 |
0.007293 |
0.3408 |
b3240 |
aaeB |
-15.57 |
0.020683 |
172 -- 248 |
45 -- 133 |
p-hydroxybenzoic acid efflux system component |
|
_____________171________________249\n_____________|__________________|\n5'-ACU...ACAUA__________________CUGGC...UGG-3'\n______________UUCGCU_UUGCGGUAAAA\n______________||||||_|:|||||||||\n______________AAGCGA_AGCGCCAUUUU\n3'-UUU...UGUUG______C___________AUCAC...UAG-5'\n_____________|__________________|\n_____________134________________44\n |
240 -- 246 |
47 -- 53 |
-22.573 kcal/mol |
5.7072 kcal/mol |
6.14031 kcal/mol |
171 249@LB@ | |@LB@5'-ACU...ACAUA CUGGC...UGG-3'@LB@ UUCGCU UUGCGGUAAAA@LB@ |||||| |:|||||||||@LB@ AAGCGA AGCGCCAUUUU@LB@3'-UUU...UGUUG C AUCAC...UAG-5'@LB@ | |@LB@ 134 44@LB@@LB@@LB@Energy -15.57 kcal/mol@LB@Hybridization Energy -22.573 kcal/mol@LB@Unfolding Energy - mRNA 5.7072 kcal/mol@LB@Unfolding Energy - sRNA 6.14031 kcal/mol@LB@@LB@Position - mRNA 172 -- 248@LB@Position - sRNA 45 -- 133@LB@Position Seed - mRNA 240 -- 246@LB@Position Seed - sRNA 47 -- 53@LB@ |
73 |
0.007584 |
0.3458 |
b0059 |
rapA |
-13.35 |
0.058963 |
263 -- 277 |
46 -- 60 |
RNA polymerase remodeling/recycling factor ATPase; RNA polymerase-associated ATP-dependent RNA translocase |
|
_____________262_____________278\n_____________|_______________|\n5'-GCU...GGAAC_______________UGCGC...UUU-3'\n______________CGUUGUCGCGGUGGA\n______________||:|||||||||::|\n______________GCGACAGCGCCAUUU\n3'-UUU...UUGAA_______________UAUCA...UAG-5'\n_____________|_______________|\n_____________61______________45\n |
269 -- 275 |
48 -- 54 |
-26.0749 kcal/mol |
7.19742 kcal/mol |
6.07408 kcal/mol |
262 278@LB@ | |@LB@5'-GCU...GGAAC UGCGC...UUU-3'@LB@ CGUUGUCGCGGUGGA@LB@ ||:|||||||||::|@LB@ GCGACAGCGCCAUUU@LB@3'-UUU...UUGAA UAUCA...UAG-5'@LB@ | |@LB@ 61 45@LB@@LB@@LB@Energy -13.35 kcal/mol@LB@Hybridization Energy -26.0749 kcal/mol@LB@Unfolding Energy - mRNA 7.19742 kcal/mol@LB@Unfolding Energy - sRNA 6.07408 kcal/mol@LB@@LB@Position - mRNA 263 -- 277@LB@Position - sRNA 46 -- 60@LB@Position Seed - mRNA 269 -- 275@LB@Position Seed - sRNA 48 -- 54@LB@ |
74 |
0.007724 |
0.3458 |
b1261 |
trpB |
-16.40 |
0.014006 |
36 -- 47 |
195 -- 206 |
tryptophan synthase beta subunit |
|
_____________35___________48\n_____________|____________|\n5'-UGG...AACGU____________GGGCU...UCA-3'\n______________UCUGCUGGCGGG\n______________||||||||||||\n______________AGACGACCGCCC\n3'-UUU...AUAUU____________ACUAA...UAG-5'\n_____________|____________|\n_____________207__________194\n |
41 -- 47 |
195 -- 201 |
-26.9412 kcal/mol |
6.0368 kcal/mol |
9.05854 kcal/mol |
35 48@LB@ | |@LB@5'-UGG...AACGU GGGCU...UCA-3'@LB@ UCUGCUGGCGGG@LB@ ||||||||||||@LB@ AGACGACCGCCC@LB@3'-UUU...AUAUU ACUAA...UAG-5'@LB@ | |@LB@ 207 194@LB@@LB@@LB@Energy -16.40 kcal/mol@LB@Hybridization Energy -26.9412 kcal/mol@LB@Unfolding Energy - mRNA 6.0368 kcal/mol@LB@Unfolding Energy - sRNA 9.05854 kcal/mol@LB@@LB@Position - mRNA 36 -- 47@LB@Position - sRNA 195 -- 206@LB@Position Seed - mRNA 41 -- 47@LB@Position Seed - sRNA 195 -- 201@LB@ |
75 |
0.007778 |
0.3458 |
b0766 |
ybhA |
-9.49 |
0.341100 |
208 -- 245 |
124 -- 172 |
pyridoxal phosphate (PLP) phosphatase |
|
_____________207___________________________246\n_____________|_____________________________|\n5'-GAA...UGGAA_______UG________________U___UCUCG...GCG-3'\n______________UACGCCA__AC_CA__CACGCGUGA_UGC\n______________|||:|||__||_||__|||:|:|||_|||\n______________AUGUGGU__UG_GU__GUGUGUACU_ACG\n3'-UUU...CUAAA_______UA__A__CA_____________UCCGU...UAG-5'\n_____________|_____________________________|\n_____________173___________________________123\n |
195 -- 201 |
182 -- 188 |
-28.0817 kcal/mol |
7.23992 kcal/mol |
7.72227 kcal/mol |
207 246@LB@ | |@LB@5'-GAA...UGGAA UG U UCUCG...GCG-3'@LB@ UACGCCA AC CA CACGCGUGA UGC@LB@ |||:||| || || |||:|:||| |||@LB@ AUGUGGU UG GU GUGUGUACU ACG@LB@3'-UUU...CUAAA UA A CA UCCGU...UAG-5'@LB@ | |@LB@ 173 123@LB@@LB@@LB@Energy -9.49 kcal/mol@LB@Hybridization Energy -28.0817 kcal/mol@LB@Unfolding Energy - mRNA 7.23992 kcal/mol@LB@Unfolding Energy - sRNA 7.72227 kcal/mol@LB@@LB@Position - mRNA 208 -- 245@LB@Position - sRNA 124 -- 172@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 182 -- 188@LB@ |
76 |
0.007832 |
0.3458 |
b1054 |
lpxL |
-10.56 |
0.214918 |
224 -- 240 |
1 -- 17 |
lauryl-acyl carrier protein (ACP)-dependent acyltransferase |
|
_____________223_______241\n_____________|_________|\n5'-AAA...CGCAC_________CGCGU...CCU-3'\n______________UGCUUCAUC\n______________|||||||||\n______________ACGAAGUAG\n3'-UUU...GGGGA_________-5'\n_____________|________|\n_____________18_______1\n |
234 -- 240 |
1 -- 7 |
-13.5925 kcal/mol |
1.26369 kcal/mol |
0.710349 kcal/mol |
223 241@LB@ | |@LB@5'-AAA...CGCAC CGCGU...CCU-3'@LB@ UGCUUCAUC@LB@ |||||||||@LB@ ACGAAGUAG@LB@3'-UUU...GGGGA -5'@LB@ | |@LB@ 18 1@LB@@LB@@LB@Energy -10.56 kcal/mol@LB@Hybridization Energy -13.5925 kcal/mol@LB@Unfolding Energy - mRNA 1.26369 kcal/mol@LB@Unfolding Energy - sRNA 0.710349 kcal/mol@LB@@LB@Position - mRNA 224 -- 240@LB@Position - sRNA 1 -- 17@LB@Position Seed - mRNA 234 -- 240@LB@Position Seed - sRNA 1 -- 7@LB@ |
77 |
0.007981 |
0.3458 |
b1738 |
chbB |
-9.80 |
0.299184 |
58 -- 71 |
174 -- 187 |
N N'-diacetylchitobiose-specific enzyme IIB component of PTS |
|
_____________57_______________________________72\n_____________|________________________________|\n5'-AAU...UAUAA___CAAAGAA______U_______G__U____CGUAU...CGG-3'\n______________GGU_______AUACUA_UGCUCAG_UC_AUAC\n______________|||_______|:||:|_|:|||||_||_|:||\n______________CCA_______UGUGGU_AUGAGUC_AG_UGUG\n3'-UUU...ACCGC___CUAAAA_______U_______________UACUA...UAG-5'\n_____________|________________________________|\n_____________188______________________________173\n |
65 -- 71 |
174 -- 180 |
-20.4225 kcal/mol |
4.13376 kcal/mol |
5.03959 kcal/mol |
57 72@LB@ | |@LB@5'-AAU...UAUAA CAAAGAA U G U CGUAU...CGG-3'@LB@ GGU AUACUA UGCUCAG UC AUAC@LB@ ||| |:||:| |:||||| || |:||@LB@ CCA UGUGGU AUGAGUC AG UGUG@LB@3'-UUU...ACCGC CUAAAA U UACUA...UAG-5'@LB@ | |@LB@ 188 173@LB@@LB@@LB@Energy -9.80 kcal/mol@LB@Hybridization Energy -20.4225 kcal/mol@LB@Unfolding Energy - mRNA 4.13376 kcal/mol@LB@Unfolding Energy - sRNA 5.03959 kcal/mol@LB@@LB@Position - mRNA 58 -- 71@LB@Position - sRNA 174 -- 187@LB@Position Seed - mRNA 65 -- 71@LB@Position Seed - sRNA 174 -- 180@LB@ |
78 |
0.008099 |
0.3458 |
b2810 |
csdA |
-12.29 |
0.097398 |
132 -- 155 |
3 -- 23 |
cysteine sulfinate desulfinase |
|
_____________131_______________156\n_____________|_________________|\n5'-CUU...GGUUA____U________A___AAGUG...AAG-3'\n______________GCAC_CUCCUUGU_UCA\n______________||||_|:|||||:_|||\n______________CGUG_GGGGAACG_AGU\n3'-UUU...UACCC_____________A___AG-5'\n_____________|_________________|\n_____________24________________2\n |
145 -- 151 |
7 -- 13 |
-20.4088 kcal/mol |
3.04417 kcal/mol |
7.17675 kcal/mol |
131 156@LB@ | |@LB@5'-CUU...GGUUA U A AAGUG...AAG-3'@LB@ GCAC CUCCUUGU UCA@LB@ |||| |:|||||: |||@LB@ CGUG GGGGAACG AGU@LB@3'-UUU...UACCC A AG-5'@LB@ | |@LB@ 24 2@LB@@LB@@LB@Energy -12.29 kcal/mol@LB@Hybridization Energy -20.4088 kcal/mol@LB@Unfolding Energy - mRNA 3.04417 kcal/mol@LB@Unfolding Energy - sRNA 7.17675 kcal/mol@LB@@LB@Position - mRNA 132 -- 155@LB@Position - sRNA 3 -- 23@LB@Position Seed - mRNA 145 -- 151@LB@Position Seed - sRNA 7 -- 13@LB@ |
79 |
0.008119 |
0.3458 |
b0945 |
pyrD |
-11.48 |
0.141710 |
30 -- 41 |
191 -- 202 |
dihydro-orotate oxidase FMN-linked |
|
_____________29______________________42\n_____________|_______________________|\n5'-UGU...AGCAA_____________A___GA____CGU-3'\n______________UUACGCCG_UAUU_CAG__ACGC\n______________||||:||:_||:|_|||__||:|\n______________AAUGUGGU_AUGA_GUC__UGUG\n3'-UUU...ACUAA________U________AG____UACUA...UAG-5'\n_____________|_______________________|\n_____________203_____________________190\n |
277 -- 283 |
182 -- 188 |
-20.4941 kcal/mol |
3.55802 kcal/mol |
4.91485 kcal/mol |
29 42@LB@ | |@LB@5'-UGU...AGCAA A GA CGU-3'@LB@ UUACGCCG UAUU CAG ACGC@LB@ ||||:||: ||:| ||| ||:|@LB@ AAUGUGGU AUGA GUC UGUG@LB@3'-UUU...ACUAA U AG UACUA...UAG-5'@LB@ | |@LB@ 203 190@LB@@LB@@LB@Energy -11.48 kcal/mol@LB@Hybridization Energy -20.4941 kcal/mol@LB@Unfolding Energy - mRNA 3.55802 kcal/mol@LB@Unfolding Energy - sRNA 4.91485 kcal/mol@LB@@LB@Position - mRNA 30 -- 41@LB@Position - sRNA 191 -- 202@LB@Position Seed - mRNA 277 -- 283@LB@Position Seed - sRNA 182 -- 188@LB@ |
80 |
0.008443 |
0.3551 |
b3791 |
wecE |
-14.19 |
0.039608 |
22 -- 66 |
14 -- 64 |
TDP-4-oxo-6-deoxy-D-glucose transaminase |
|
_____________21______________67\n_____________|_______________|\n5'-GAC...ACCGC_______________GGUGA...CCC-3'\n______________GUACU_GGUUAUACA\n______________:||||_:||:|:|||\n______________UAUGA_UCAGUGUGU\n3'-UUU...GUGGU_____G_________ACUAC...UAG-5'\n_____________|_______________|\n_____________65______________13\n |
185 -- 191 |
167 -- 173 |
-12.5686 kcal/mol |
2.73267 kcal/mol |
0.435744 kcal/mol |
21 67@LB@ | |@LB@5'-GAC...ACCGC GGUGA...CCC-3'@LB@ GUACU GGUUAUACA@LB@ :|||| :||:|:|||@LB@ UAUGA UCAGUGUGU@LB@3'-UUU...GUGGU G ACUAC...UAG-5'@LB@ | |@LB@ 65 13@LB@@LB@@LB@Energy -14.19 kcal/mol@LB@Hybridization Energy -12.5686 kcal/mol@LB@Unfolding Energy - mRNA 2.73267 kcal/mol@LB@Unfolding Energy - sRNA 0.435744 kcal/mol@LB@@LB@Position - mRNA 22 -- 66@LB@Position - sRNA 14 -- 64@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 167 -- 173@LB@ |