| 91 |
0.01018 |
0.3575 |
b1660 |
ydhC |
-16.12 |
0.016020 |
223 -- 255 |
172 -- 209 |
putative arabinose efflux transporter |
|
_____________222_____________________________________256\n_____________|_______________________________________|\n5'-GAA...AUUUU______G_________________A______________UUCUG...AGG-3'\n______________UAGUCU_GCUGGCGGGU____UUG_GC__GUACUCGGUU\n______________||:|||_||||||||||____||:_:|__:|||||:||:\n______________AUUAGA_CGACCGCCCA____AAU_UG__UAUGAGUCAG\n3'-UUU...UCCAU_________________CUAA___G__GU__________UGUGU...UAG-5'\n_____________|_______________________________________|\n_____________210_____________________________________171\n |
249 -- 255 |
172 -- 178 |
-38.0361 kcal/mol |
10.2504 kcal/mol |
15.0669 kcal/mol |
222 256@LB@ | |@LB@5'-GAA...AUUUU G A UUCUG...AGG-3'@LB@ UAGUCU GCUGGCGGGU UUG GC GUACUCGGUU@LB@ ||:||| |||||||||| ||: :| :|||||:||:@LB@ AUUAGA CGACCGCCCA AAU UG UAUGAGUCAG@LB@3'-UUU...UCCAU CUAA G GU UGUGU...UAG-5'@LB@ | |@LB@ 210 171@LB@@LB@@LB@Energy -16.12 kcal/mol@LB@Hybridization Energy -38.0361 kcal/mol@LB@Unfolding Energy - mRNA 10.2504 kcal/mol@LB@Unfolding Energy - sRNA 15.0669 kcal/mol@LB@@LB@Position - mRNA 223 -- 255@LB@Position - sRNA 172 -- 209@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 172 -- 178@LB@ |
| 92 |
0.01029 |
0.3575 |
b3360 |
pabA |
-10.28 |
0.244097 |
93 -- 100 |
16 -- 23 |
aminodeoxychorismate synthase subunit II |
|
_____________92__________101\n_____________|___________|\n5'-GCG...ACCUC___________UUGUG...CGU-3'\n______________UACCAGUACUU\n______________:||||:||||:\n______________GUGGUUAUGAG\n3'-UUU...AAAAU___________UCAGU...UAG-5'\n_____________|___________|\n_____________24__________15\n |
250 -- 256 |
176 -- 182 |
-13.2399 kcal/mol |
3.06354 kcal/mol |
3.38772 kcal/mol |
92 101@LB@ | |@LB@5'-GCG...ACCUC UUGUG...CGU-3'@LB@ UACCAGUACUU@LB@ :||||:||||:@LB@ GUGGUUAUGAG@LB@3'-UUU...AAAAU UCAGU...UAG-5'@LB@ | |@LB@ 24 15@LB@@LB@@LB@Energy -10.28 kcal/mol@LB@Hybridization Energy -13.2399 kcal/mol@LB@Unfolding Energy - mRNA 3.06354 kcal/mol@LB@Unfolding Energy - sRNA 3.38772 kcal/mol@LB@@LB@Position - mRNA 93 -- 100@LB@Position - sRNA 16 -- 23@LB@Position Seed - mRNA 250 -- 256@LB@Position Seed - sRNA 176 -- 182@LB@ |
| 93 |
0.01041 |
0.3575 |
b3556 |
cspA |
-12.65 |
0.082193 |
78 -- 98 |
139 -- 160 |
RNA chaperone and antiterminator cold-inducible |
|
_____________77_____________________99\n_____________|______________________|\n5'-AUU...UAGUA_________C____CA______AUCGU...ACU-3'\n______________AGGCAAGUC__CUU__AGAGUU\n______________|||||||||__|||__|||:||\n______________UCCGUUCAG__GAA__UCUUAA\n3'-UUU...CUACG_________UU___AG______CGCCA...UAG-5'\n_____________|______________________|\n_____________161____________________138\n |
80 -- 86 |
152 -- 158 |
-20.4019 kcal/mol |
4.68257 kcal/mol |
5.76704 kcal/mol |
77 99@LB@ | |@LB@5'-AUU...UAGUA C CA AUCGU...ACU-3'@LB@ AGGCAAGUC CUU AGAGUU@LB@ ||||||||| ||| |||:||@LB@ UCCGUUCAG GAA UCUUAA@LB@3'-UUU...CUACG UU AG CGCCA...UAG-5'@LB@ | |@LB@ 161 138@LB@@LB@@LB@Energy -12.65 kcal/mol@LB@Hybridization Energy -20.4019 kcal/mol@LB@Unfolding Energy - mRNA 4.68257 kcal/mol@LB@Unfolding Energy - sRNA 5.76704 kcal/mol@LB@@LB@Position - mRNA 78 -- 98@LB@Position - sRNA 139 -- 160@LB@Position Seed - mRNA 80 -- 86@LB@Position Seed - sRNA 152 -- 158@LB@ |
| 94 |
0.01043 |
0.3575 |
b4293 |
fecI |
-12.90 |
0.072974 |
203 -- 229 |
60 -- 87 |
RNA polymerase sigma-19 factor fec operon-specific; ECF sigma factor |
|
_____________202_______________________230\n_____________|_________________________|\n5'-AAU...AUCCC__________UAC_____UA_____UUAGA...AGU-3'\n______________AUUUUAUACC____CUUA___ACAC\n______________||||||:|||____||:|___||||\n______________UAAAAUGUGG____GAGU___UGUG\n3'-UUU...CCCAC__________UUAU____CAG____UACUA...UAG-5'\n_____________|_________________________|\n_____________88________________________59\n |
66 -- 72 |
183 -- 189 |
-15.6606 kcal/mol |
1.17775 kcal/mol |
4.92862 kcal/mol |
202 230@LB@ | |@LB@5'-AAU...AUCCC UAC UA UUAGA...AGU-3'@LB@ AUUUUAUACC CUUA ACAC@LB@ ||||||:||| ||:| ||||@LB@ UAAAAUGUGG GAGU UGUG@LB@3'-UUU...CCCAC UUAU CAG UACUA...UAG-5'@LB@ | |@LB@ 88 59@LB@@LB@@LB@Energy -12.90 kcal/mol@LB@Hybridization Energy -15.6606 kcal/mol@LB@Unfolding Energy - mRNA 1.17775 kcal/mol@LB@Unfolding Energy - sRNA 4.92862 kcal/mol@LB@@LB@Position - mRNA 203 -- 229@LB@Position - sRNA 60 -- 87@LB@Position Seed - mRNA 66 -- 72@LB@Position Seed - sRNA 183 -- 189@LB@ |
| 95 |
0.01047 |
0.3575 |
b4232 |
fbp |
-15.00 |
0.027086 |
59 -- 98 |
140 -- 173 |
fructose-1 6-bisphosphatase I |
|
_____________58_______________________________________________99\n_____________|________________________________________________|\n5'-AAA...CUGCC_____UU____________U_________G_GAAAC__A_________AAUCC...CCA-3'\n______________GCUCA__UUACGCAU_AUG_CGGGCAAGU_A_____GC_UUUCAGGAU\n______________:||||__|:||:|||_|||_|:|||||||_|_____:|_||||||:||\n______________UGAGU__AGUGUGUA_UAC_GUCCGUUCA_U_____UG_AAAGUCUUA\n3'-UUU...GGUUA_____C_________C_____________G__________________ACGCC...UAG-5'\n_____________|________________________________________________|\n_____________174______________________________________________139\n |
92 -- 98 |
140 -- 146 |
-39.7088 kcal/mol |
14.0477 kcal/mol |
8.83532 kcal/mol |
58 99@LB@ | |@LB@5'-AAA...CUGCC UU U G GAAAC A AAUCC...CCA-3'@LB@ GCUCA UUACGCAU AUG CGGGCAAGU A GC UUUCAGGAU@LB@ :|||| |:||:||| ||| |:||||||| | :| ||||||:||@LB@ UGAGU AGUGUGUA UAC GUCCGUUCA U UG AAAGUCUUA@LB@3'-UUU...GGUUA C C G ACGCC...UAG-5'@LB@ | |@LB@ 174 139@LB@@LB@@LB@Energy -15.00 kcal/mol@LB@Hybridization Energy -39.7088 kcal/mol@LB@Unfolding Energy - mRNA 14.0477 kcal/mol@LB@Unfolding Energy - sRNA 8.83532 kcal/mol@LB@@LB@Position - mRNA 59 -- 98@LB@Position - sRNA 140 -- 173@LB@Position Seed - mRNA 92 -- 98@LB@Position Seed - sRNA 140 -- 146@LB@ |
| 96 |
0.01055 |
0.3575 |
b1953 |
yodD |
-11.39 |
0.147949 |
264 -- 273 |
196 -- 205 |
uncharacterized protein |
|
_____________263_____274\n_____________|_______|\n5'-CCA...UUCAC_______GUUUU...AAG-3'\n______________CUUCAUC\n______________|||||||\n______________GAAGUAG\n3'-UUU...GGAAC_______-5'\n_____________|______|\n_____________206____196\n |
33 -- 39 |
1 -- 7 |
-8.82286 kcal/mol |
0.690587 kcal/mol |
0.701705 kcal/mol |
263 274@LB@ | |@LB@5'-CCA...UUCAC GUUUU...AAG-3'@LB@ CUUCAUC@LB@ |||||||@LB@ GAAGUAG@LB@3'-UUU...GGAAC -5'@LB@ | |@LB@ 206 196@LB@@LB@@LB@Energy -11.39 kcal/mol@LB@Hybridization Energy -8.82286 kcal/mol@LB@Unfolding Energy - mRNA 0.690587 kcal/mol@LB@Unfolding Energy - sRNA 0.701705 kcal/mol@LB@@LB@Position - mRNA 264 -- 273@LB@Position - sRNA 196 -- 205@LB@Position Seed - mRNA 33 -- 39@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 97 |
0.01056 |
0.3575 |
b2372 |
yfdV |
-22.84 |
0.000764 |
17 -- 36 |
167 -- 186 |
putative transporter |
|
_____________16___________________37\n_____________|____________________|\n5'-UUC...UUAAC____________________AACCG...CUC-3'\n______________CACCGGUAUUCAGUCGCGCA\n______________||||::||:||||||:|:||\n______________GUGGUUAUGAGUCAGUGUGU\n3'-UUU...AAAAU____________________ACUAC...UAG-5'\n_____________|____________________|\n_____________187__________________166\n |
30 -- 36 |
167 -- 173 |
-32.2779 kcal/mol |
2.6891 kcal/mol |
5.05466 kcal/mol |
16 37@LB@ | |@LB@5'-UUC...UUAAC AACCG...CUC-3'@LB@ CACCGGUAUUCAGUCGCGCA@LB@ ||||::||:||||||:|:||@LB@ GUGGUUAUGAGUCAGUGUGU@LB@3'-UUU...AAAAU ACUAC...UAG-5'@LB@ | |@LB@ 187 166@LB@@LB@@LB@Energy -22.84 kcal/mol@LB@Hybridization Energy -32.2779 kcal/mol@LB@Unfolding Energy - mRNA 2.6891 kcal/mol@LB@Unfolding Energy - sRNA 5.05466 kcal/mol@LB@@LB@Position - mRNA 17 -- 36@LB@Position - sRNA 167 -- 186@LB@Position Seed - mRNA 30 -- 36@LB@Position Seed - sRNA 167 -- 173@LB@ |
| 98 |
0.01073 |
0.3575 |
b0424 |
yajL |
-11.45 |
0.143367 |
14 -- 29 |
155 -- 170 |
oxidative-stress-resistance chaperone |
|
_____________13_______________30\n_____________|________________|\n5'-AGA...GUGAU________________UUGAU...CCA-3'\n______________UACGUGAUGCAGGUGA\n______________:||:|||||||||::|\n______________GUGUACUACGUCCGUU\n3'-UUU...UCAGU________________CAGUU...UAG-5'\n_____________|________________|\n_____________171______________154\n |
22 -- 28 |
156 -- 162 |
-24.1359 kcal/mol |
6.48358 kcal/mol |
7.06607 kcal/mol |
13 30@LB@ | |@LB@5'-AGA...GUGAU UUGAU...CCA-3'@LB@ UACGUGAUGCAGGUGA@LB@ :||:|||||||||::|@LB@ GUGUACUACGUCCGUU@LB@3'-UUU...UCAGU CAGUU...UAG-5'@LB@ | |@LB@ 171 154@LB@@LB@@LB@Energy -11.45 kcal/mol@LB@Hybridization Energy -24.1359 kcal/mol@LB@Unfolding Energy - mRNA 6.48358 kcal/mol@LB@Unfolding Energy - sRNA 7.06607 kcal/mol@LB@@LB@Position - mRNA 14 -- 29@LB@Position - sRNA 155 -- 170@LB@Position Seed - mRNA 22 -- 28@LB@Position Seed - sRNA 156 -- 162@LB@ |
| 99 |
0.01084 |
0.3575 |
b0872 |
hcr |
-12.58 |
0.084706 |
106 -- 121 |
192 -- 205 |
HCP oxidoreductase NADH-dependent |
|
_____________105______________122\n_____________|________________|\n5'-UCC...CAGAC__________U_C___ACGAG...AUU-3'\n______________CUGCUGGCGG_G_UGA\n______________||||||||||_|_|||\n______________GACGACCGCC_C_ACU\n3'-UUU...UAUUA________________AAAAU...UAG-5'\n_____________|________________|\n_____________206______________191\n |
109 -- 115 |
196 -- 202 |
-24.2797 kcal/mol |
6.55023 kcal/mol |
9.06563 kcal/mol |
105 122@LB@ | |@LB@5'-UCC...CAGAC U C ACGAG...AUU-3'@LB@ CUGCUGGCGG G UGA@LB@ |||||||||| | |||@LB@ GACGACCGCC C ACU@LB@3'-UUU...UAUUA AAAAU...UAG-5'@LB@ | |@LB@ 206 191@LB@@LB@@LB@Energy -12.58 kcal/mol@LB@Hybridization Energy -24.2797 kcal/mol@LB@Unfolding Energy - mRNA 6.55023 kcal/mol@LB@Unfolding Energy - sRNA 9.06563 kcal/mol@LB@@LB@Position - mRNA 106 -- 121@LB@Position - sRNA 192 -- 205@LB@Position Seed - mRNA 109 -- 115@LB@Position Seed - sRNA 196 -- 202@LB@ |
| 100 |
0.01091 |
0.3575 |
b0123 |
cueO |
-12.06 |
0.108476 |
211 -- 256 |
146 -- 195 |
multicopper oxidase (laccase) |
|
_____________210________________________________________________257\n_____________|__________________________________________________|\n5'-CUG...ACGUC_______CUUAA________C_______UG_________U__________GCCGC...CGU-3'\n______________GUGAUUU______AAUAUUC_GUCGCGC__GGUGU_GGC___UCGGCUUU\n______________|||||||______||||:||_|||:|:|__|:||:_|||___||::||||\n______________CACUAAA______UUAUGAG_CAGUGUG__CUACG_CCG___AGUUGAAA\n3'-UUU...CCGCC_______AUGUGG_______U_______UA_____U___UUC________GUCUU...UAG-5'\n_____________|__________________________________________________|\n_____________196________________________________________________145\n |
250 -- 256 |
146 -- 152 |
-42.9672 kcal/mol |
13.2361 kcal/mol |
12.9468 kcal/mol |
210 257@LB@ | |@LB@5'-CUG...ACGUC CUUAA C UG U GCCGC...CGU-3'@LB@ GUGAUUU AAUAUUC GUCGCGC GGUGU GGC UCGGCUUU@LB@ ||||||| ||||:|| |||:|:| |:||: ||| ||::||||@LB@ CACUAAA UUAUGAG CAGUGUG CUACG CCG AGUUGAAA@LB@3'-UUU...CCGCC AUGUGG U UA U UUC GUCUU...UAG-5'@LB@ | |@LB@ 196 145@LB@@LB@@LB@Energy -12.06 kcal/mol@LB@Hybridization Energy -42.9672 kcal/mol@LB@Unfolding Energy - mRNA 13.2361 kcal/mol@LB@Unfolding Energy - sRNA 12.9468 kcal/mol@LB@@LB@Position - mRNA 211 -- 256@LB@Position - sRNA 146 -- 195@LB@Position Seed - mRNA 250 -- 256@LB@Position Seed - sRNA 146 -- 152@LB@ |
