| 1 |
0 |
0 |
b0069 |
sgrR |
-186.00 |
0.000000 |
1 -- 133 |
1 -- 133 |
transcriptional DNA-binding transcriptional activator of sgrS sRNA |
|
______________1____________________________________________________________________________________________________________________________________134\n______________|____________________________________________________________________________________________________________________________________|\n___________5'-_____________________________________________________________________________________________________________________________________GUUAG...UGA-3'\n______________CAUCCCACUGCAUCAGUCCUUCAAGCAUGGUUAAUCGUUGUGGGACGCUUAACCAACGCAACCAGCACAACUUCGCUGUCGCGGUAAAAUAGUGCUGAUAAAACUGACGCAUGGGGCACCCCCUUGCUUCAUC\n______________|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\n______________GUAGGGUGACGUAGUCAGGAAGUUCGUACCAAUUAGCAACACCCUGCGAAUUGGUUGCGUUGGUCGUGUUGAAGCGACAGCGCCAUUUUAUCACGACUAUUUUGACUGCGUACCCCGUGGGGGAACGAAGUAG\n3'-UUU...CGCCA_____________________________________________________________________________________________________________________________________-5'\n_____________|____________________________________________________________________________________________________________________________________|\n_____________134__________________________________________________________________________________________________________________________________1\n |
127 -- 133 |
1 -- 7 |
-280.35 kcal/mol |
42.3709 kcal/mol |
58.1542 kcal/mol |
1 134@LB@ | |@LB@ 5'- GUUAG...UGA-3'@LB@ CAUCCCACUGCAUCAGUCCUUCAAGCAUGGUUAAUCGUUGUGGGACGCUUAACCAACGCAACCAGCACAACUUCGCUGUCGCGGUAAAAUAGUGCUGAUAAAACUGACGCAUGGGGCACCCCCUUGCUUCAUC@LB@ |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||@LB@ GUAGGGUGACGUAGUCAGGAAGUUCGUACCAAUUAGCAACACCCUGCGAAUUGGUUGCGUUGGUCGUGUUGAAGCGACAGCGCCAUUUUAUCACGACUAUUUUGACUGCGUACCCCGUGGGGGAACGAAGUAG@LB@3'-UUU...CGCCA -5'@LB@ | |@LB@ 134 1@LB@@LB@@LB@Energy -186.00 kcal/mol@LB@Hybridization Energy -280.35 kcal/mol@LB@Unfolding Energy - mRNA 42.3709 kcal/mol@LB@Unfolding Energy - sRNA 58.1542 kcal/mol@LB@@LB@Position - mRNA 1 -- 133@LB@Position - sRNA 1 -- 133@LB@Position Seed - mRNA 127 -- 133@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 83 |
0.008941 |
0.3575 |
b3343 |
tusB |
-13.46 |
0.055944 |
1 -- 14 |
190 -- 203 |
mnm(5)-s(2)U34-tRNA synthesis 2-thiolation protein |
|
______________1_____________15\n______________|_____________|\n___________5'-_______C______ACAUU...GCG-3'\n______________GCUGGCG_GUGAUU\n______________|||||||_||||||\n______________CGACCGC_CACUAA\n3'-UUU...UUAGA_______C______AAUGU...UAG-5'\n_____________|______________|\n_____________204____________189\n |
1 -- 7 |
197 -- 203 |
-22.3351 kcal/mol |
4.22102 kcal/mol |
9.06745 kcal/mol |
1 15@LB@ | |@LB@ 5'- C ACAUU...GCG-3'@LB@ GCUGGCG GUGAUU@LB@ ||||||| ||||||@LB@ CGACCGC CACUAA@LB@3'-UUU...UUAGA C AAUGU...UAG-5'@LB@ | |@LB@ 204 189@LB@@LB@@LB@Energy -13.46 kcal/mol@LB@Hybridization Energy -22.3351 kcal/mol@LB@Unfolding Energy - mRNA 4.22102 kcal/mol@LB@Unfolding Energy - sRNA 9.06745 kcal/mol@LB@@LB@Position - mRNA 1 -- 14@LB@Position - sRNA 190 -- 203@LB@Position Seed - mRNA 1 -- 7@LB@Position Seed - sRNA 197 -- 203@LB@ |
| 169 |
0.01937 |
0.3812 |
b4557 |
yidD |
-14.07 |
0.041992 |
2 -- 13 |
11 -- 22 |
membrane protein insertion efficiency factor UPF0161 family inner membrane protein |
|
_____________1______________________14\n_____________|______________________|\n__________5'-C____________GUAUCG____UUACA...UCA-3'\n______________UGGGGCAUCCCC_______GUC\n______________|||||||:||||_______:||\n______________ACCCCGUGGGGG_______UAG\n3'-UUU...UGCGU____________AACGAAG___-5'\n_____________|_____________________|\n_____________23____________________11\n |
7 -- 13 |
11 -- 17 |
-28.608 kcal/mol |
8.24927 kcal/mol |
10.7363 kcal/mol |
1 14@LB@ | |@LB@ 5'-C GUAUCG UUACA...UCA-3'@LB@ UGGGGCAUCCCC GUC@LB@ |||||||:|||| :||@LB@ ACCCCGUGGGGG UAG@LB@3'-UUU...UGCGU AACGAAG -5'@LB@ | |@LB@ 23 11@LB@@LB@@LB@Energy -14.07 kcal/mol@LB@Hybridization Energy -28.608 kcal/mol@LB@Unfolding Energy - mRNA 8.24927 kcal/mol@LB@Unfolding Energy - sRNA 10.7363 kcal/mol@LB@@LB@Position - mRNA 2 -- 13@LB@Position - sRNA 11 -- 22@LB@Position Seed - mRNA 7 -- 13@LB@Position Seed - sRNA 11 -- 17@LB@ |
| 197 |
0.02355 |
0.3833 |
b2764 |
cysJ |
-10.17 |
0.255883 |
3 -- 30 |
98 -- 123 |
sulfite reductase alpha subunit flavoprotein |
|
_____________2________31\n_____________|________|\n5'-UUC...AACAG________ACUGG...UUG-3'\n______________CUUUGCUU\n______________|:||||||\n______________GGAACGAA\n3'-UUU...GUGGG________GUAG-5'\n_____________|________|\n_____________124______97\n |
176 -- 182 |
5 -- 11 |
-8.59037 kcal/mol |
0.881795 kcal/mol |
1.04254 kcal/mol |
2 31@LB@ | |@LB@5'-UUC...AACAG ACUGG...UUG-3'@LB@ CUUUGCUU@LB@ |:||||||@LB@ GGAACGAA@LB@3'-UUU...GUGGG GUAG-5'@LB@ | |@LB@ 124 97@LB@@LB@@LB@Energy -10.17 kcal/mol@LB@Hybridization Energy -8.59037 kcal/mol@LB@Unfolding Energy - mRNA 0.881795 kcal/mol@LB@Unfolding Energy - sRNA 1.04254 kcal/mol@LB@@LB@Position - mRNA 3 -- 30@LB@Position - sRNA 98 -- 123@LB@Position Seed - mRNA 176 -- 182@LB@Position Seed - sRNA 5 -- 11@LB@ |
| 106 |
0.01145 |
0.3575 |
b2350 |
gtrA |
-11.86 |
0.119007 |
4 -- 25 |
148 -- 167 |
CPS-53 (KpLE1) prophage; bactoprenol-linked glucose translocase/flippase |
|
_____________3_____________26\n_____________|_____________|\n5'-GAA...UGUAU__AU_________ACAAACC-3'\n______________CU__GUCGCGCAU\n______________||__|||:|:|||\n______________GA__CAGUGUGUA\n3'-UUU...GUUAU__GU_________CUACG...UAG-5'\n_____________|_____________|\n_____________168___________147\n |
287 -- 293 |
166 -- 172 |
-13.6011 kcal/mol |
2.0532 kcal/mol |
0.604639 kcal/mol |
3 26@LB@ | |@LB@5'-GAA...UGUAU AU ACAAACC-3'@LB@ CU GUCGCGCAU@LB@ || |||:|:|||@LB@ GA CAGUGUGUA@LB@3'-UUU...GUUAU GU CUACG...UAG-5'@LB@ | |@LB@ 168 147@LB@@LB@@LB@Energy -11.86 kcal/mol@LB@Hybridization Energy -13.6011 kcal/mol@LB@Unfolding Energy - mRNA 2.0532 kcal/mol@LB@Unfolding Energy - sRNA 0.604639 kcal/mol@LB@@LB@Position - mRNA 4 -- 25@LB@Position - sRNA 148 -- 167@LB@Position Seed - mRNA 287 -- 293@LB@Position Seed - sRNA 166 -- 172@LB@ |
| 141 |
0.01524 |
0.3575 |
b0133 |
panC |
-11.57 |
0.136229 |
4 -- 24 |
142 -- 162 |
pantothenate synthetase |
|
_____________3_________25\n_____________|_________|\n5'-GGC...ACCGG_________UCCUA...UGC-3'\n______________CGGUCACAU\n______________|:||||||:\n______________GUCAGUGUG\n3'-UUU...UAUGA_________UACUA...UAG-5'\n_____________|_________|\n_____________163_______141\n |
65 -- 71 |
168 -- 174 |
-12.1402 kcal/mol |
2.67616 kcal/mol |
0.276974 kcal/mol |
3 25@LB@ | |@LB@5'-GGC...ACCGG UCCUA...UGC-3'@LB@ CGGUCACAU@LB@ |:||||||:@LB@ GUCAGUGUG@LB@3'-UUU...UAUGA UACUA...UAG-5'@LB@ | |@LB@ 163 141@LB@@LB@@LB@Energy -11.57 kcal/mol@LB@Hybridization Energy -12.1402 kcal/mol@LB@Unfolding Energy - mRNA 2.67616 kcal/mol@LB@Unfolding Energy - sRNA 0.276974 kcal/mol@LB@@LB@Position - mRNA 4 -- 24@LB@Position - sRNA 142 -- 162@LB@Position Seed - mRNA 65 -- 71@LB@Position Seed - sRNA 168 -- 174@LB@ |
| 54 |
0.005402 |
0.3247 |
b3054 |
ygiF |
-14.97 |
0.027422 |
5 -- 80 |
111 -- 177 |
inorganic triphosphatase |
|
_____________4_______________________________________________________________________________81\n_____________|_______________________________________________________________________________|\n_______5'-GGCA_____GU___UAC_____AA___U______AUCAA_______CCUCUG___CA____U_G_______U___AA______CGCCC...CCG-3'\n______________UCAGU__CGC_____GCA__GCA__UCGAC_____UCGGAAU______UGU__GGUC_U_CCACUGC_UCA__CUUUUA\n______________|||||__|:|_____|||__|||__||:||_____||:||||______||:__||||_|_|||||||_|||__|:||:|\n______________AGUCA__GUG_____CGU__CGU__AGUUG_____AGUCUUA______ACG__CCAG_A_GGUGACG_AGU__GGAAGU\n3'-UUU...UUAUG_____GU___UACUA___C____UC_____AA_________________________U_G_______U___CA______UCGUA...UAG-5'\n_____________|_______________________________________________________________________________|\n_____________178_____________________________________________________________________________110\n |
62 -- 68 |
123 -- 129 |
-50.4846 kcal/mol |
15.6316 kcal/mol |
23.3828 kcal/mol |
4 81@LB@ | |@LB@ 5'-GGCA GU UAC AA U AUCAA CCUCUG CA U G U AA CGCCC...CCG-3'@LB@ UCAGU CGC GCA GCA UCGAC UCGGAAU UGU GGUC U CCACUGC UCA CUUUUA@LB@ ||||| |:| ||| ||| ||:|| ||:|||| ||: |||| | ||||||| ||| |:||:|@LB@ AGUCA GUG CGU CGU AGUUG AGUCUUA ACG CCAG A GGUGACG AGU GGAAGU@LB@3'-UUU...UUAUG GU UACUA C UC AA U G U CA UCGUA...UAG-5'@LB@ | |@LB@ 178 110@LB@@LB@@LB@Energy -14.97 kcal/mol@LB@Hybridization Energy -50.4846 kcal/mol@LB@Unfolding Energy - mRNA 15.6316 kcal/mol@LB@Unfolding Energy - sRNA 23.3828 kcal/mol@LB@@LB@Position - mRNA 5 -- 80@LB@Position - sRNA 111 -- 177@LB@Position Seed - mRNA 62 -- 68@LB@Position Seed - sRNA 123 -- 129@LB@ |
| 114 |
0.01268 |
0.3575 |
b0888 |
trxB |
-13.24 |
0.061992 |
5 -- 14 |
83 -- 92 |
thioredoxin reductase FAD/NAD(P)-binding |
|
_____________4__________15\n_____________|__________|\n_______5'-AACA__________UUCAU...UGC-3'\n______________GGGGCGUUUA\n______________|||:||:|||\n______________CCCUGCGAAU\n3'-UUU...CAACA__________UGGUU...UAG-5'\n_____________|__________|\n_____________93_________82\n |
7 -- 13 |
84 -- 90 |
-15.9307 kcal/mol |
0.512019 kcal/mol |
6.69187 kcal/mol |
4 15@LB@ | |@LB@ 5'-AACA UUCAU...UGC-3'@LB@ GGGGCGUUUA@LB@ |||:||:|||@LB@ CCCUGCGAAU@LB@3'-UUU...CAACA UGGUU...UAG-5'@LB@ | |@LB@ 93 82@LB@@LB@@LB@Energy -13.24 kcal/mol@LB@Hybridization Energy -15.9307 kcal/mol@LB@Unfolding Energy - mRNA 0.512019 kcal/mol@LB@Unfolding Energy - sRNA 6.69187 kcal/mol@LB@@LB@Position - mRNA 5 -- 14@LB@Position - sRNA 83 -- 92@LB@Position Seed - mRNA 7 -- 13@LB@Position Seed - sRNA 84 -- 90@LB@ |
| 174 |
0.01972 |
0.3812 |
b0478 |
ybaL |
-7.90 |
0.612018 |
5 -- 14 |
166 -- 176 |
inner membrane putative NAD(P)-binding transporter |
|
_____________4___________15\n_____________|___________|\n_______5'-UUUA___________AAGCC...UGG-3'\n______________CAGUCGC_CAU\n______________|||||:|_|||\n______________GUCAGUG_GUA\n3'-UUU...UAUGA_______U___CUACG...UAG-5'\n_____________|___________|\n_____________177_________165\n |
5 -- 11 |
170 -- 176 |
-11.743 kcal/mol |
0.493889 kcal/mol |
0.598087 kcal/mol |
4 15@LB@ | |@LB@ 5'-UUUA AAGCC...UGG-3'@LB@ CAGUCGC CAU@LB@ |||||:| |||@LB@ GUCAGUG GUA@LB@3'-UUU...UAUGA U CUACG...UAG-5'@LB@ | |@LB@ 177 165@LB@@LB@@LB@Energy -7.90 kcal/mol@LB@Hybridization Energy -11.743 kcal/mol@LB@Unfolding Energy - mRNA 0.493889 kcal/mol@LB@Unfolding Energy - sRNA 0.598087 kcal/mol@LB@@LB@Position - mRNA 5 -- 14@LB@Position - sRNA 166 -- 176@LB@Position Seed - mRNA 5 -- 11@LB@Position Seed - sRNA 170 -- 176@LB@ |
| 62 |
0.006126 |
0.3261 |
b3824 |
rhtB |
-10.68 |
0.204362 |
7 -- 23 |
171 -- 187 |
homoserine homoserine lactone and S-methyl-methionine efflux pump |
|
_____________6_________________24\n_____________|_________________|\n_____5'-ACGCUG_______AAA_______GCGGU...ACC-3'\n______________ACGCCAG___UCAGUCA\n______________||:|||:___|||||||\n______________UGUGGUU___AGUCAGU\n3'-UUU...UAAAA_______AUG_______GUGUA...UAG-5'\n_____________|_________________|\n_____________188_______________170\n |
17 -- 23 |
171 -- 177 |
-18.1223 kcal/mol |
1.9449 kcal/mol |
4.7016 kcal/mol |
6 24@LB@ | |@LB@ 5'-ACGCUG AAA GCGGU...ACC-3'@LB@ ACGCCAG UCAGUCA@LB@ ||:|||: |||||||@LB@ UGUGGUU AGUCAGU@LB@3'-UUU...UAAAA AUG GUGUA...UAG-5'@LB@ | |@LB@ 188 170@LB@@LB@@LB@Energy -10.68 kcal/mol@LB@Hybridization Energy -18.1223 kcal/mol@LB@Unfolding Energy - mRNA 1.9449 kcal/mol@LB@Unfolding Energy - sRNA 4.7016 kcal/mol@LB@@LB@Position - mRNA 7 -- 23@LB@Position - sRNA 171 -- 187@LB@Position Seed - mRNA 17 -- 23@LB@Position Seed - sRNA 171 -- 177@LB@ |
