| 15 |
0.0008498 |
0.1886 |
b4254 |
argI |
-15.11 |
0.025648 |
62 -- 84 |
167 -- 185 |
ornithine carbamoyltransferase 1 |
b0273 |
_____________61______________________85\n_____________|_______________________|\n5'-UUC...GUCCU__________UUAUU________CCACU...AUA-3'\n______________GCCGAUACUC_____GUCACACA\n______________:||:||||||_____||||||||\n______________UGGUUAUGAG_____CAGUGUGU\n3'-UUU...AAAUG__________U____________ACUAC...UAG-5'\n_____________|_______________________|\n_____________186_____________________166\n |
78 -- 84 |
167 -- 173 |
-24.735 kcal/mol |
3.62809 kcal/mol |
5.02083 kcal/mol |
61 85@LB@ | |@LB@5'-UUC...GUCCU UUAUU CCACU...AUA-3'@LB@ GCCGAUACUC GUCACACA@LB@ :||:|||||| ||||||||@LB@ UGGUUAUGAG CAGUGUGU@LB@3'-UUU...AAAUG U ACUAC...UAG-5'@LB@ | |@LB@ 186 166@LB@@LB@@LB@Energy -15.11 kcal/mol@LB@Hybridization Energy -24.735 kcal/mol@LB@Unfolding Energy - mRNA 3.62809 kcal/mol@LB@Unfolding Energy - sRNA 5.02083 kcal/mol@LB@@LB@Position - mRNA 62 -- 84@LB@Position - sRNA 167 -- 185@LB@Position Seed - mRNA 78 -- 84@LB@Position Seed - sRNA 167 -- 173@LB@ |
| 151 |
0.01691 |
0.3749 |
b2442 |
intZ |
-12.49 |
0.088679 |
278 -- 291 |
17 -- 31 |
CPZ-55 prophage; putative phage integrase |
b2349 |
_____________277_________________292\n_____________|___________________|\n5'-ACA...AAACU____________C_G____CGGGG...UGC-3'\n______________CACCGAU__UCA_U_ACGC\n______________||||:||__|||_|_||:|\n______________GUGGUUA__AGU_A_UGUG\n3'-UUU...AAAAU_______UG___C_G____UACUA...UAG-5'\n_____________|___________________|\n_____________32__________________16\n |
269 -- 275 |
180 -- 186 |
-14.1411 kcal/mol |
1.5591 kcal/mol |
4.88042 kcal/mol |
277 292@LB@ | |@LB@5'-ACA...AAACU C G CGGGG...UGC-3'@LB@ CACCGAU UCA U ACGC@LB@ ||||:|| ||| | ||:|@LB@ GUGGUUA AGU A UGUG@LB@3'-UUU...AAAAU UG C G UACUA...UAG-5'@LB@ | |@LB@ 32 16@LB@@LB@@LB@Energy -12.49 kcal/mol@LB@Hybridization Energy -14.1411 kcal/mol@LB@Unfolding Energy - mRNA 1.5591 kcal/mol@LB@Unfolding Energy - sRNA 4.88042 kcal/mol@LB@@LB@Position - mRNA 278 -- 291@LB@Position - sRNA 17 -- 31@LB@Position Seed - mRNA 269 -- 275@LB@Position Seed - sRNA 180 -- 186@LB@ |
| 182 |
0.02094 |
0.3833 |
b0248 |
yafX |
-12.67 |
0.081205 |
189 -- 235 |
52 -- 92 |
CP4-6 prophage; uncharacterized protein |
b2643 |
_____________188______________________236\n_____________|________________________|\n5'-CCG...ACACA___G_________C____ACC___UAACC...GGC-3'\n______________GAC_CAGCACGAC_UCGC___CGC\n______________:||_||||||:||_||||___|||\n______________UUG_GUCGUGUUG_AGCG___GCG\n3'-UUU...UUGCG_____________A____ACA___CCAUU...UAG-5'\n_____________|________________________|\n_____________93_______________________51\n |
218 -- 224 |
63 -- 69 |
-27.2596 kcal/mol |
3.0161 kcal/mol |
15.5954 kcal/mol |
188 236@LB@ | |@LB@5'-CCG...ACACA G C ACC UAACC...GGC-3'@LB@ GAC CAGCACGAC UCGC CGC@LB@ :|| ||||||:|| |||| |||@LB@ UUG GUCGUGUUG AGCG GCG@LB@3'-UUU...UUGCG A ACA CCAUU...UAG-5'@LB@ | |@LB@ 93 51@LB@@LB@@LB@Energy -12.67 kcal/mol@LB@Hybridization Energy -27.2596 kcal/mol@LB@Unfolding Energy - mRNA 3.0161 kcal/mol@LB@Unfolding Energy - sRNA 15.5954 kcal/mol@LB@@LB@Position - mRNA 189 -- 235@LB@Position - sRNA 52 -- 92@LB@Position Seed - mRNA 218 -- 224@LB@Position Seed - sRNA 63 -- 69@LB@ |
| 41 |
0.003653 |
0.2912 |
b2842 |
kduD |
-13.01 |
0.069205 |
14 -- 50 |
128 -- 174 |
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase; KDG oxidoreductase; 20-ketosteroid reductase |
b4266 b2774 |
_____________13_______________________________________________51\n_____________|________________________________________________|\n5'-CCG...AACGC______U____________________GAG____________G_____CCCGA...CGG-3'\n______________GUCAUA_UGUGAUGCA_______UAAC___CAG____GCGGU_AUCUC\n______________||||:|_::|||||||_______:|||___|||____|||||_|||:|\n______________CAGUGU_GUACUACGU_______GUUG___GUC____CGCCA_UAGGG\n3'-UUU...UGAGU________________CCGUUCA____AAA___UUAA_____G_____UGACG...UAG-5'\n_____________|________________________________________________|\n_____________175______________________________________________127\n |
23 -- 29 |
160 -- 166 |
-35.8105 kcal/mol |
9.71011 kcal/mol |
15.5834 kcal/mol |
13 51@LB@ | |@LB@5'-CCG...AACGC U GAG G CCCGA...CGG-3'@LB@ GUCAUA UGUGAUGCA UAAC CAG GCGGU AUCUC@LB@ ||||:| ::||||||| :||| ||| ||||| |||:|@LB@ CAGUGU GUACUACGU GUUG GUC CGCCA UAGGG@LB@3'-UUU...UGAGU CCGUUCA AAA UUAA G UGACG...UAG-5'@LB@ | |@LB@ 175 127@LB@@LB@@LB@Energy -13.01 kcal/mol@LB@Hybridization Energy -35.8105 kcal/mol@LB@Unfolding Energy - mRNA 9.71011 kcal/mol@LB@Unfolding Energy - sRNA 15.5834 kcal/mol@LB@@LB@Position - mRNA 14 -- 50@LB@Position - sRNA 128 -- 174@LB@Position Seed - mRNA 23 -- 29@LB@Position Seed - sRNA 160 -- 166@LB@ |
| 1 |
0 |
0 |
b0069 |
sgrR |
-186.00 |
0.000000 |
1 -- 133 |
1 -- 133 |
transcriptional DNA-binding transcriptional activator of sgrS sRNA |
|
______________1____________________________________________________________________________________________________________________________________134\n______________|____________________________________________________________________________________________________________________________________|\n___________5'-_____________________________________________________________________________________________________________________________________GUUAG...UGA-3'\n______________CAUCCCACUGCAUCAGUCCUUCAAGCAUGGUUAAUCGUUGUGGGACGCUUAACCAACGCAACCAGCACAACUUCGCUGUCGCGGUAAAAUAGUGCUGAUAAAACUGACGCAUGGGGCACCCCCUUGCUUCAUC\n______________|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\n______________GUAGGGUGACGUAGUCAGGAAGUUCGUACCAAUUAGCAACACCCUGCGAAUUGGUUGCGUUGGUCGUGUUGAAGCGACAGCGCCAUUUUAUCACGACUAUUUUGACUGCGUACCCCGUGGGGGAACGAAGUAG\n3'-UUU...CGCCA_____________________________________________________________________________________________________________________________________-5'\n_____________|____________________________________________________________________________________________________________________________________|\n_____________134__________________________________________________________________________________________________________________________________1\n |
127 -- 133 |
1 -- 7 |
-280.35 kcal/mol |
42.3709 kcal/mol |
58.1542 kcal/mol |
1 134@LB@ | |@LB@ 5'- GUUAG...UGA-3'@LB@ CAUCCCACUGCAUCAGUCCUUCAAGCAUGGUUAAUCGUUGUGGGACGCUUAACCAACGCAACCAGCACAACUUCGCUGUCGCGGUAAAAUAGUGCUGAUAAAACUGACGCAUGGGGCACCCCCUUGCUUCAUC@LB@ |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||@LB@ GUAGGGUGACGUAGUCAGGAAGUUCGUACCAAUUAGCAACACCCUGCGAAUUGGUUGCGUUGGUCGUGUUGAAGCGACAGCGCCAUUUUAUCACGACUAUUUUGACUGCGUACCCCGUGGGGGAACGAAGUAG@LB@3'-UUU...CGCCA -5'@LB@ | |@LB@ 134 1@LB@@LB@@LB@Energy -186.00 kcal/mol@LB@Hybridization Energy -280.35 kcal/mol@LB@Unfolding Energy - mRNA 42.3709 kcal/mol@LB@Unfolding Energy - sRNA 58.1542 kcal/mol@LB@@LB@Position - mRNA 1 -- 133@LB@Position - sRNA 1 -- 133@LB@Position Seed - mRNA 127 -- 133@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 2 |
4.964e-05 |
0.08352 |
b0475 |
hemH |
-12.83 |
0.075395 |
238 -- 275 |
45 -- 93 |
ferrochelatase |
|
_____________237______________________________________________________________________276\n_____________|________________________________________________________________________|\n5'-CGG...AGACU_______________C__________AAACCU_____________C_______C_C_______C___A____UAAAA...GCG-3'\n______________AAAACC____GGUAU___CUGCUGGC______GGGU______ACG_CCGAUGC_C___CACAC_UGA_GCGG\n______________||||||____|||||___||||||||______||||______||:_||:||:|_|___|||||_|||_||:|\n______________UUUUGG____CCAUA___GACGACCG______CCCA______UGU_GGUUAUG_G___GUGUG_ACU_CGUC\n_______3'-UUUU______UCGU_____UUA__________________CUAAAA___________A_UCA_____U___A____CGUUC...UAG-5'\n_____________|________________________________________________________________________|\n_____________94_______________________________________________________________________44\n |
247 -- 253 |
178 -- 184 |
-50.8068 kcal/mol |
15.6732 kcal/mol |
22.9013 kcal/mol |
237 276@LB@ | |@LB@5'-CGG...AGACU C AAACCU C C C C A UAAAA...GCG-3'@LB@ AAAACC GGUAU CUGCUGGC GGGU ACG CCGAUGC C CACAC UGA GCGG@LB@ |||||| ||||| |||||||| |||| ||: ||:||:| | ||||| ||| ||:|@LB@ UUUUGG CCAUA GACGACCG CCCA UGU GGUUAUG G GUGUG ACU CGUC@LB@ 3'-UUUU UCGU UUA CUAAAA A UCA U A CGUUC...UAG-5'@LB@ | |@LB@ 94 44@LB@@LB@@LB@Energy -12.83 kcal/mol@LB@Hybridization Energy -50.8068 kcal/mol@LB@Unfolding Energy - mRNA 15.6732 kcal/mol@LB@Unfolding Energy - sRNA 22.9013 kcal/mol@LB@@LB@Position - mRNA 238 -- 275@LB@Position - sRNA 45 -- 93@LB@Position Seed - mRNA 247 -- 253@LB@Position Seed - sRNA 178 -- 184@LB@ |
| 3 |
8.668e-05 |
0.08442 |
b3892 |
fdoI |
-15.80 |
0.018551 |
255 -- 278 |
1 -- 22 |
formate dehydrogenase-O cytochrome b556 subunit |
|
_____________254_________________279\n_____________|___________________|\n5'-CCA...UGGAU____G___UC_________CUGGC...UGG-3'\n______________CACC_CCU__UGCUUCAUC\n______________||||_|||__|||||||||\n______________GUGG_GGA__ACGAAGUAG\n3'-UUU...ACCCC____G______________-5'\n_____________|__________________|\n_____________23_________________1\n |
272 -- 278 |
1 -- 7 |
-24.2792 kcal/mol |
4.44512 kcal/mol |
7.16879 kcal/mol |
254 279@LB@ | |@LB@5'-CCA...UGGAU G UC CUGGC...UGG-3'@LB@ CACC CCU UGCUUCAUC@LB@ |||| ||| |||||||||@LB@ GUGG GGA ACGAAGUAG@LB@3'-UUU...ACCCC G -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -15.80 kcal/mol@LB@Hybridization Energy -24.2792 kcal/mol@LB@Unfolding Energy - mRNA 4.44512 kcal/mol@LB@Unfolding Energy - sRNA 7.16879 kcal/mol@LB@@LB@Position - mRNA 255 -- 278@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 272 -- 278@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 4 |
0.0001068 |
0.08442 |
b2069 |
yegD |
-18.64 |
0.004982 |
22 -- 145 |
51 -- 187 |
Hsp70 chaperone family protein |
|
_____________21_________________146\n_____________|__________________|\n5'-CAC...ACAUC__________A_______CGCUU...UGC-3'\n______________GCAUCUCCUU__UUCAUC\n______________|||:|:||||__||||||\n______________CGUGGGGGAA__AAGUAG\n3'-UUU...UACCC__________CG______-5'\n_____________|_________________|\n_____________188_______________51\n |
72 -- 78 |
9 -- 15 |
-21.4418 kcal/mol |
1.05479 kcal/mol |
7.2533 kcal/mol |
21 146@LB@ | |@LB@5'-CAC...ACAUC A CGCUU...UGC-3'@LB@ GCAUCUCCUU UUCAUC@LB@ |||:|:|||| ||||||@LB@ CGUGGGGGAA AAGUAG@LB@3'-UUU...UACCC CG -5'@LB@ | |@LB@ 188 51@LB@@LB@@LB@Energy -18.64 kcal/mol@LB@Hybridization Energy -21.4418 kcal/mol@LB@Unfolding Energy - mRNA 1.05479 kcal/mol@LB@Unfolding Energy - sRNA 7.2533 kcal/mol@LB@@LB@Position - mRNA 22 -- 145@LB@Position - sRNA 51 -- 187@LB@Position Seed - mRNA 72 -- 78@LB@Position Seed - sRNA 9 -- 15@LB@ |
| 5 |
0.0001254 |
0.08442 |
b4481 |
wecF |
-11.27 |
0.155862 |
165 -- 206 |
62 -- 99 |
TDP-Fuc4NAc:lipidIIFuc4NAc transferase |
|
_____________164_____________________________________207\n_____________|_______________________________________|\n5'-UUU...GCGUC___G_____U_____UC__GC___________CAG____CUUUA...ACG-3'\n______________ACU_CGGUU_UAUAU__UG__GG_AAGUCAGC___UUCA\n______________|||_|:||:_:|:||__||__||_||||||:|___||||\n______________UGA_GUCAG_GUGUA__AC__CC_UUCAGUUG___AAGU\n3'-UUU...GGUUA_________U_____CU__GU__G________A______CUUAA...UAG-5'\n_____________|_______________________________________|\n_____________100_____________________________________61\n |
54 -- 60 |
149 -- 155 |
-25.8626 kcal/mol |
10.7241 kcal/mol |
8.38318 kcal/mol |
164 207@LB@ | |@LB@5'-UUU...GCGUC G U UC GC CAG CUUUA...ACG-3'@LB@ ACU CGGUU UAUAU UG GG AAGUCAGC UUCA@LB@ ||| |:||: :|:|| || || ||||||:| ||||@LB@ UGA GUCAG GUGUA AC CC UUCAGUUG AAGU@LB@3'-UUU...GGUUA U CU GU G A CUUAA...UAG-5'@LB@ | |@LB@ 100 61@LB@@LB@@LB@Energy -11.27 kcal/mol@LB@Hybridization Energy -25.8626 kcal/mol@LB@Unfolding Energy - mRNA 10.7241 kcal/mol@LB@Unfolding Energy - sRNA 8.38318 kcal/mol@LB@@LB@Position - mRNA 165 -- 206@LB@Position - sRNA 62 -- 99@LB@Position Seed - mRNA 54 -- 60@LB@Position Seed - sRNA 149 -- 155@LB@ |
| 6 |
0.0003621 |
0.1842 |
b3242 |
aaeX |
-9.38 |
0.356280 |
9 -- 19 |
125 -- 135 |
DUF1656 family putative inner membrane efflux pump associated protein |
|
_____________8_________20\n_____________|_________|\n5'-GCG...CAUAA_________UAAUA...GGG-3'\n______________CAGUUACGC\n______________||||:||:|\n______________GUCAGUGUG\n3'-UUU...UAUGA_________UACUA...UAG-5'\n_____________|_________|\n_____________136_______124\n |
75 -- 81 |
168 -- 174 |
-12.5845 kcal/mol |
1.53643 kcal/mol |
0.276974 kcal/mol |
8 20@LB@ | |@LB@5'-GCG...CAUAA UAAUA...GGG-3'@LB@ CAGUUACGC@LB@ ||||:||:|@LB@ GUCAGUGUG@LB@3'-UUU...UAUGA UACUA...UAG-5'@LB@ | |@LB@ 136 124@LB@@LB@@LB@Energy -9.38 kcal/mol@LB@Hybridization Energy -12.5845 kcal/mol@LB@Unfolding Energy - mRNA 1.53643 kcal/mol@LB@Unfolding Energy - sRNA 0.276974 kcal/mol@LB@@LB@Position - mRNA 9 -- 19@LB@Position - sRNA 125 -- 135@LB@Position Seed - mRNA 75 -- 81@LB@Position Seed - sRNA 168 -- 174@LB@ |
