| 200 |
0.008935 |
0.1548 |
b1427 |
rimL |
-11.51 |
0.046463 |
223 -- 252 |
68 -- 89 |
ribosomal-protein-L7/L12-serine acetyltransferase |
|
_____________222____________________________253\n_____________|______________________________|\n5'-GAU...AGUAA________C___AAUUACA_____U_____AAAAU...CCU-3'\n______________GCGAAUCA_UUG_______UGCUG_UGCAG\n______________:|||||||_|||_______||||:_|||||\n______________UGCUUAGU_AAC_______ACGAU_ACGUC\n3'-UUU...CAGCA________U_____________________AUUAA...ACG-5'\n_____________|______________________________|\n_____________90_____________________________67\n |
224 -- 230 |
82 -- 88 |
-23.0393 kcal/mol |
7.0303 kcal/mol |
4.506 kcal/mol |
222 253@LB@ | |@LB@5'-GAU...AGUAA C AAUUACA U AAAAU...CCU-3'@LB@ GCGAAUCA UUG UGCUG UGCAG@LB@ :||||||| ||| ||||: |||||@LB@ UGCUUAGU AAC ACGAU ACGUC@LB@3'-UUU...CAGCA U AUUAA...ACG-5'@LB@ | |@LB@ 90 67@LB@@LB@@LB@Energy -11.51 kcal/mol@LB@Hybridization Energy -23.0393 kcal/mol@LB@Unfolding Energy - mRNA 7.0303 kcal/mol@LB@Unfolding Energy - sRNA 4.506 kcal/mol@LB@@LB@Position - mRNA 223 -- 252@LB@Position - sRNA 68 -- 89@LB@Position Seed - mRNA 224 -- 230@LB@Position Seed - sRNA 82 -- 88@LB@ |
| 122 |
0.004264 |
0.1231 |
b2914 |
rpiA |
-10.11 |
0.103884 |
190 -- 234 |
45 -- 89 |
ribose 5-phosphate isomerase constitutive |
|
_____________189______________________________________________235\n_____________|________________________________________________|\n5'-GAA...CACAG_____A____CA__AC______GAUGA___G_______C_________GGGCG...CAC-3'\n______________GCGAA_CGAU__UG____GCAG_____AUU_AAAAAAG__AGUAGGAU\n______________:||||_|:||__||____||||_____|||_|||||||__||||:||:\n______________UGCUU_GUUA__AC____CGUC_____UAA_UUUUUUC__UCAUUCUG\n3'-UUU...CAGCA_____A____AC__GAUA____AU______G_______CU________UUAUA...ACG-5'\n_____________|________________________________________________|\n_____________90_______________________________________________44\n |
228 -- 234 |
45 -- 51 |
-27.3521 kcal/mol |
11.527 kcal/mol |
5.72096 kcal/mol |
189 235@LB@ | |@LB@5'-GAA...CACAG A CA AC GAUGA G C GGGCG...CAC-3'@LB@ GCGAA CGAU UG GCAG AUU AAAAAAG AGUAGGAU@LB@ :|||| |:|| || |||| ||| ||||||| ||||:||:@LB@ UGCUU GUUA AC CGUC UAA UUUUUUC UCAUUCUG@LB@3'-UUU...CAGCA A AC GAUA AU G CU UUAUA...ACG-5'@LB@ | |@LB@ 90 44@LB@@LB@@LB@Energy -10.11 kcal/mol@LB@Hybridization Energy -27.3521 kcal/mol@LB@Unfolding Energy - mRNA 11.527 kcal/mol@LB@Unfolding Energy - sRNA 5.72096 kcal/mol@LB@@LB@Position - mRNA 190 -- 234@LB@Position - sRNA 45 -- 89@LB@Position Seed - mRNA 228 -- 234@LB@Position Seed - sRNA 45 -- 51@LB@ |
| 87 |
0.002406 |
0.09689 |
b3317 |
rplB |
-11.53 |
0.045926 |
6 -- 24 |
68 -- 86 |
50S ribosomal subunit protein L2 |
|
_____________5___________________25\n_____________|___________________|\n______5'-GCAGA______AGC__________AAACU...UGC-3'\n______________AAUCAA___UGCUGUGCAG\n______________||||||___||||:|||||\n______________UUAGUU___ACGAUACGUC\n3'-UUU...CAUGC______AAC__________AUUAA...ACG-5'\n_____________|___________________|\n_____________87__________________67\n |
18 -- 24 |
68 -- 74 |
-20.8348 kcal/mol |
5.62876 kcal/mol |
3.67996 kcal/mol |
5 25@LB@ | |@LB@ 5'-GCAGA AGC AAACU...UGC-3'@LB@ AAUCAA UGCUGUGCAG@LB@ |||||| ||||:|||||@LB@ UUAGUU ACGAUACGUC@LB@3'-UUU...CAUGC AAC AUUAA...ACG-5'@LB@ | |@LB@ 87 67@LB@@LB@@LB@Energy -11.53 kcal/mol@LB@Hybridization Energy -20.8348 kcal/mol@LB@Unfolding Energy - mRNA 5.62876 kcal/mol@LB@Unfolding Energy - sRNA 3.67996 kcal/mol@LB@@LB@Position - mRNA 6 -- 24@LB@Position - sRNA 68 -- 86@LB@Position Seed - mRNA 18 -- 24@LB@Position Seed - sRNA 68 -- 74@LB@ |
| 25 |
0.0001129 |
0.01591 |
b3304 |
rplR |
-13.93 |
0.009701 |
159 -- 205 |
37 -- 94 |
50S ribosomal subunit protein L18 |
|
_____________158___________________________________________________________206\n_____________|_____________________________________________________________|\n5'-AUC...ACGAA________UAC___AGAG______________________________GUA___C______UAAGA...GUC-3'\n______________GUCGUGCG___CAA____GCUA_____________AGAA_GAAGUAAG___ACA_UAUGGA\n______________|||||:||___|||____||||_____________|:||_||||||||___|||_||||||\n______________CAGCAUGC___GUU____CGAU_____________UUUU_CUUCAUUC___UGU_AUACCU\n3'-UUU...AGCCG________UUA___AACA____ACGUCAUUAAGUU____C______________U______CGCGU...ACG-5'\n_____________|_____________________________________________________________|\n_____________95____________________________________________________________36\n |
186 -- 192 |
47 -- 53 |
-32.9659 kcal/mol |
11.091 kcal/mol |
7.93697 kcal/mol |
158 206@LB@ | |@LB@5'-AUC...ACGAA UAC AGAG GUA C UAAGA...GUC-3'@LB@ GUCGUGCG CAA GCUA AGAA GAAGUAAG ACA UAUGGA@LB@ |||||:|| ||| |||| |:|| |||||||| ||| ||||||@LB@ CAGCAUGC GUU CGAU UUUU CUUCAUUC UGU AUACCU@LB@3'-UUU...AGCCG UUA AACA ACGUCAUUAAGUU C U CGCGU...ACG-5'@LB@ | |@LB@ 95 36@LB@@LB@@LB@Energy -13.93 kcal/mol@LB@Hybridization Energy -32.9659 kcal/mol@LB@Unfolding Energy - mRNA 11.091 kcal/mol@LB@Unfolding Energy - sRNA 7.93697 kcal/mol@LB@@LB@Position - mRNA 159 -- 205@LB@Position - sRNA 37 -- 94@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 47 -- 53@LB@ |
| 76 |
0.001842 |
0.08273 |
b1717 |
rpmI |
-9.61 |
0.135308 |
218 -- 256 |
48 -- 92 |
50S ribosomal subunit protein L35 |
|
_____________217___________________________________________257\n_____________|_____________________________________________|\n5'-GCG...AAGAC_____________GC_____A___C____________ACC_____AGGUG...UGA-3'\n______________CGUACG___CGGU__UGCUA_GCG____UUCAAAAAA___GGUAA\n______________||||||___|::|__|||||_||:____|||||||||___:||||\n______________GCAUGC___GUUA__ACGAU_CGU____AAGUUUUUU___UCAUU\n3'-UUU...CCGCA______UUA____AC_____A___CAUU_________CCU_____CUGUU...ACG-5'\n_____________|_____________________________________________|\n_____________93____________________________________________47\n |
242 -- 248 |
56 -- 62 |
-26.2826 kcal/mol |
11.8203 kcal/mol |
4.85131 kcal/mol |
217 257@LB@ | |@LB@5'-GCG...AAGAC GC A C ACC AGGUG...UGA-3'@LB@ CGUACG CGGU UGCUA GCG UUCAAAAAA GGUAA@LB@ |||||| |::| ||||| ||: ||||||||| :||||@LB@ GCAUGC GUUA ACGAU CGU AAGUUUUUU UCAUU@LB@3'-UUU...CCGCA UUA AC A CAUU CCU CUGUU...ACG-5'@LB@ | |@LB@ 93 47@LB@@LB@@LB@Energy -9.61 kcal/mol@LB@Hybridization Energy -26.2826 kcal/mol@LB@Unfolding Energy - mRNA 11.8203 kcal/mol@LB@Unfolding Energy - sRNA 4.85131 kcal/mol@LB@@LB@Position - mRNA 218 -- 256@LB@Position - sRNA 48 -- 92@LB@Position Seed - mRNA 242 -- 248@LB@Position Seed - sRNA 56 -- 62@LB@ |
| 14 |
2.236e-05 |
0.005627 |
b3306 |
rpsH |
-12.22 |
0.029933 |
187 -- 206 |
35 -- 55 |
30S ribosomal subunit protein S8 |
|
_____________186____________________207\n_____________|______________________|\n5'-AGC...AUCAC______A_______________AUGCA...AAG-3'\n______________GGGAGU_AAGACAG_AU_GAGC\n______________||:|||_||||||:_||_||||\n______________CCUUCA_UUCUGUU_UA_CUCG\n3'-UUU...UUUUU______________A__C____CGUUG...ACG-5'\n_____________|______________________|\n_____________56_____________________34\n |
194 -- 200 |
43 -- 49 |
-20.142 kcal/mol |
3.78995 kcal/mol |
4.0932 kcal/mol |
186 207@LB@ | |@LB@5'-AGC...AUCAC A AUGCA...AAG-3'@LB@ GGGAGU AAGACAG AU GAGC@LB@ ||:||| ||||||: || ||||@LB@ CCUUCA UUCUGUU UA CUCG@LB@3'-UUU...UUUUU A C CGUUG...ACG-5'@LB@ | |@LB@ 56 34@LB@@LB@@LB@Energy -12.22 kcal/mol@LB@Hybridization Energy -20.142 kcal/mol@LB@Unfolding Energy - mRNA 3.78995 kcal/mol@LB@Unfolding Energy - sRNA 4.0932 kcal/mol@LB@@LB@Position - mRNA 187 -- 206@LB@Position - sRNA 35 -- 55@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 43 -- 49@LB@ |
| 176 |
0.007245 |
0.145 |
b0397 |
sbcC |
-11.91 |
0.036282 |
117 -- 185 |
1 -- 55 |
exonuclease dsDNA ATP-dependent |
|
_____________116____________________________________________________________________186\n_____________|______________________________________________________________________|\n5'-GAA...GCACU_____AACU______AUCGC___A__________CA__AUCUUUUCACCAC__________A_____C__CGGAG...UUG-3'\n______________GGAAG____GGAUGA_____AGC_GCAACGUCUG__GC_____________GACGUUGCAU_C_CCU_GC\n______________|||||____:||::|_____|||_||||||:|::__||_____________||||||||||_|_|||_||\n______________CCUUC____UCUGUU_____UCG_CGUUGCGGGU__CG_____________CUGCAACGUA_G_GGA_CG\n3'-UUU...UUUUU_____AU________AUACC______________AG__AA_____________________A_U______-5'\n_____________|_____________________________________________________________________|\n_____________56____________________________________________________________________1\n |
170 -- 176 |
10 -- 16 |
-47.2501 kcal/mol |
18.5328 kcal/mol |
16.8092 kcal/mol |
116 186@LB@ | |@LB@5'-GAA...GCACU AACU AUCGC A CA AUCUUUUCACCAC A C CGGAG...UUG-3'@LB@ GGAAG GGAUGA AGC GCAACGUCUG GC GACGUUGCAU C CCU GC@LB@ ||||| :||::| ||| ||||||:|:: || |||||||||| | ||| ||@LB@ CCUUC UCUGUU UCG CGUUGCGGGU CG CUGCAACGUA G GGA CG@LB@3'-UUU...UUUUU AU AUACC AG AA A U -5'@LB@ | |@LB@ 56 1@LB@@LB@@LB@Energy -11.91 kcal/mol@LB@Hybridization Energy -47.2501 kcal/mol@LB@Unfolding Energy - mRNA 18.5328 kcal/mol@LB@Unfolding Energy - sRNA 16.8092 kcal/mol@LB@@LB@Position - mRNA 117 -- 185@LB@Position - sRNA 1 -- 55@LB@Position Seed - mRNA 170 -- 176@LB@Position Seed - sRNA 10 -- 16@LB@ |
| 18 |
4.045e-05 |
0.007917 |
b0723 |
sdhA |
-14.73 |
0.005501 |
172 -- 195 |
67 -- 90 |
succinate dehydrogenase flavoprotein subunit |
|
_____________171______________________196\n_____________|________________________|\n5'-GGU...UGAUU________C______G____G___GUGUG...GUG-3'\n______________UAUGGAUU_GUUGUG_UGUG_GGU\n______________||:|:||:_:|||||_|:||_:||\n______________AUGCUUAG_UAACAC_AUAC_UCA\n3'-UUU...GCAGC________U______G____G___UUAAG...ACG-5'\n_____________|________________________|\n_____________91_______________________66\n |
173 -- 179 |
83 -- 89 |
-23.9499 kcal/mol |
4.69238 kcal/mol |
4.5307 kcal/mol |
171 196@LB@ | |@LB@5'-GGU...UGAUU C G G GUGUG...GUG-3'@LB@ UAUGGAUU GUUGUG UGUG GGU@LB@ ||:|:||: :||||| |:|| :||@LB@ AUGCUUAG UAACAC AUAC UCA@LB@3'-UUU...GCAGC U G G UUAAG...ACG-5'@LB@ | |@LB@ 91 66@LB@@LB@@LB@Energy -14.73 kcal/mol@LB@Hybridization Energy -23.9499 kcal/mol@LB@Unfolding Energy - mRNA 4.69238 kcal/mol@LB@Unfolding Energy - sRNA 4.5307 kcal/mol@LB@@LB@Position - mRNA 172 -- 195@LB@Position - sRNA 67 -- 90@LB@Position Seed - mRNA 173 -- 179@LB@Position Seed - sRNA 83 -- 89@LB@ |
| 169 |
0.006778 |
0.1407 |
b3300 |
secY |
-11.17 |
0.056917 |
151 -- 190 |
56 -- 93 |
preprotein translocase membrane subunit |
|
_____________150_______________________________________191\n_____________|_________________________________________|\n5'-CCU...GGCGC______UGCU_____AGC_____________AA________UAAGU...UCC-3'\n______________UCGUGC____AUCGA___UGCUG_GCGGUAA__UCGAGGAA\n______________||||:|____|||:|___||||:_||:||||__||:|::||\n______________AGCAUG____UAGUU___ACGAU_CGUCAUU__AGUUUUUU\n3'-UUU...GCCGC______CU_______AAC_____A_______A_________CCUUC...ACG-5'\n_____________|_________________________________________|\n_____________94________________________________________55\n |
174 -- 180 |
65 -- 71 |
-28.5007 kcal/mol |
12.5083 kcal/mol |
4.83069 kcal/mol |
150 191@LB@ | |@LB@5'-CCU...GGCGC UGCU AGC AA UAAGU...UCC-3'@LB@ UCGUGC AUCGA UGCUG GCGGUAA UCGAGGAA@LB@ ||||:| |||:| ||||: ||:|||| ||:|::||@LB@ AGCAUG UAGUU ACGAU CGUCAUU AGUUUUUU@LB@3'-UUU...GCCGC CU AAC A A CCUUC...ACG-5'@LB@ | |@LB@ 94 55@LB@@LB@@LB@Energy -11.17 kcal/mol@LB@Hybridization Energy -28.5007 kcal/mol@LB@Unfolding Energy - mRNA 12.5083 kcal/mol@LB@Unfolding Energy - sRNA 4.83069 kcal/mol@LB@@LB@Position - mRNA 151 -- 190@LB@Position - sRNA 56 -- 93@LB@Position Seed - mRNA 174 -- 180@LB@Position Seed - sRNA 65 -- 71@LB@ |
| 68 |
0.001184 |
0.06134 |
b3188 |
sfsB |
-9.82 |
0.121108 |
186 -- 205 |
37 -- 57 |
malPQ operon transcriptional activator |
|
_____________185___________________206\n_____________|_____________________|\n5'-CGG...AACUU____________AAAA_____AAGUA...UGA-3'\n______________AAGG_AGUGAGG____AUGGA\n______________||||_|||:||:____|||||\n______________UUCC_UCAUUCU____UACCU\n3'-UUU...GUUUU____U_______GUUA_____CGCGU...ACG-5'\n_____________|_____________________|\n_____________58____________________36\n |
190 -- 196 |
46 -- 52 |
-17.294 kcal/mol |
3.7439 kcal/mol |
3.68958 kcal/mol |
185 206@LB@ | |@LB@5'-CGG...AACUU AAAA AAGUA...UGA-3'@LB@ AAGG AGUGAGG AUGGA@LB@ |||| |||:||: |||||@LB@ UUCC UCAUUCU UACCU@LB@3'-UUU...GUUUU U GUUA CGCGU...ACG-5'@LB@ | |@LB@ 58 36@LB@@LB@@LB@Energy -9.82 kcal/mol@LB@Hybridization Energy -17.294 kcal/mol@LB@Unfolding Energy - mRNA 3.7439 kcal/mol@LB@Unfolding Energy - sRNA 3.68958 kcal/mol@LB@@LB@Position - mRNA 186 -- 205@LB@Position - sRNA 37 -- 57@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 46 -- 52@LB@ |
